BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486206
Length=3445
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57570.2 | Symbols: | ARM repeat superfamily protein | chr3... 2344 0.0
> AT3G57570.2 | Symbols: | ARM repeat superfamily protein | chr3:21312444-21320365
FORWARD LENGTH=3705
Length=3705
Score = 2344 bits (1269), Expect = 0.0
Identities = 1493/1596 (94%), Gaps = 36/1596 (2%)
Strand=Plus/Plus
Query 1881 AGGTTCAACTTTTGACAGTGATCGAGTGCTAAAAATGATACCAGAGTGGGCTAAAAGTGT 1940
||||| ||||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct 2035 AGGTTTAACTTTTGACAGTGATCGAGTGCTAAAGCTGATCCCAGAGTGGGCTAGAAGTGT 2094
Query 1941 ACAAAACTGGGACTCACTGATCGGACCTTTGCTTGACAAAATGTTCTTGGAGCCATCCAA 2000
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2095 ACAAAACTGGAACTCACTGATCGGACCTTTGCTTGACAAGATGTTCTTGGAGCCATCCAA 2154
Query 2001 TGCCATCATCGTTAGGTTTCTTAGTTGCATCAGTGAATATTTGGCAGATACGTCGGACTT 2060
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2155 TGCCATCATGGTTAGGTTTCTTAGTTGCATCAGTGAATCTTTGGCAGATACGTCGGACTT 2214
Query 2061 GGTCCTTCCGCATGTACTTTCACATATGAAGAAGCAAAACAAGGTGGATGAGAGCTTCAT 2120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2215 GGTCCTTCCGCATGTACTTTCACATATGAAGAAGCAAAACAAGGTGGATGCGAGCTTCAT 2274
Query 2121 ATCCAGATCTGATACTAAAAGTTCAGTTGACAAAGCTAAATCGGAGAAATCTCTATTTGA 2180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2275 ATCCAGATCTGATACTAAAAGTTCAGTTGACAAAACTAAATCGGAGAAATCTCTATTTGA 2334
Query 2181 CCACCTTTGCCCACTGCTTATATTAAGACTGCTTCCCCAAAGAGTGTTTGATGATATTGA 2240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2335 CCACCTTTGCCCACTGCTTATATTAAGACTGCTTCCCCAAAGAGTGTTTGATGATATTGA 2394
Query 2241 TTCTTCTACAATTTATGGTAAATTCCTCAGCGGGGACTCTGTGAATGAGTACCAAGACAT 2300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2395 TTCTTCTACAATTTATGGTAAATTCCTCAGCGGGGACTCTGTGAATGACTACCAAGACAT 2454
Query 2301 CAAGTTTGAGGATTGCCAATGCATTGCCGCTTTCATTTTGGAAAGGGCATTTTCTAAGTT 2360
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2455 CAAGTTTGAGGATTGTCAATGCATTGCTACTTTCATTTTGGAAAGGGCATTTTCTAAGTT 2514
Query 2361 CGAATTTGAAGAAGTTCGGAAACTCTCTGCTGAGCTATGTGGACGTCTCCATCCCCAGGT 2420
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2515 TGAATTTGAAGAAGTTCGGAAACTCTCTGCTGAGTTATGTGGACGTCTCCATCCCCAGGT 2574
Query 2421 GCTATTTCCAACTGTTTTATTGCAACTTGAAAAGGCCACAGAGCTACAAGACAGCCTCAA 2480
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 2575 GCTATTTCCAACTGTTTTATTGCAACTCGAAAAGGCCACAGAGATACAAGACAGCCTCAA 2634
Query 2481 GATTAAAGCTTGCCTATTTTCTATATGCACATCCCTTGTGGTTCGAGGCTGGGAGTCTTT 2540
||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |
Sbjct 2635 GATTAAAGCTTGCCTATTTTCTATATGCACATCTCTTATGGTCCGAGGCTGGGAGTCTCT 2694
Query 2541 CTCACACAGTGTGACACCTAAGATCAGAAAAGTCCTGGAAAATATTTTGTTATGGCCTTC 2600
||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2695 CTCACACAGAGTAACACCTAAGATCAGGAAAGTCCTGGAAAATATTTTGTTATGGCCTTC 2754
Query 2601 TGTTGAAGATGAAATTTCCAAAGTACAACATGGGTGCATTGATTGTCTGGCACTGATGAT 2660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2755 TGTTGAAGATGAAATTTCCAAAGTACAACATGGGTGCATTGATTGTCTGGCACTGATGAT 2814
Query 2661 ATGTGCTGAACTTCAACATCTTAAATCTTTGAAAACATCTGGAGGAGAACAAATACGTAC 2720
|||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 2815 ATGTGCTGAACTGCAACATCTTAAATCTTCAAAAACATCTGGAGGAGAAAAAATACGTTC 2874
Query 2721 AACAGAGGA-GGACACATCTGGTAATTCTGTCCTAGATTACACGATCCATTGTTTAGTAG 2779
||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct 2875 AACAG-GGAAGGACACATCTGGTTATTCTGTCCTAGATTACACTATCCATTGTTTAATAG 2933
Query 2780 AAGACAGAAGTAACTGCTCGTCTATCCCAAAGCTGAGTACTG------------GTGAAA 2827
||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2934 AAGACCGAAGTAACTGCTCGTCTATCCCAAAGCTGAGTACTGATATCCTAACTTGTGAAA 2993
Query 2828 ATCCTCTTCCTATTCCATTTCGTCTGTGCATGGCAAATGTGATCATTAGTGCTTGTCAAA 2887
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 2994 ATCCTCTTCCTATTCCATTTCGTCTATGCATGGCAAATGTTATCATCAGTGCTTGTCAAA 3053
Query 2888 AAATCCCCGAGTCTTCCAAGAAGACTTTTGCTCGAAAAGCTCTTCCGCCTCTTGTTCATT 2947
||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 3054 AAAACCCTGAGTCTTCCAAGAAGACTTTTGCCCGAAAAGCTCTTCCGCCTCTTATTCATT 3113
Query 2948 CCCTCAAGGTCATATCTGCACCTGAGGTCCGTGCAGCCTGTATCCAAGTCTTATTCTCGG 3007
|||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||
Sbjct 3114 CCCTCAAGGTCATATCTGTACCGGAGGTCCGTGCAGCTTGTATCCAGGTCTTATTCTCGG 3173
Query 3008 CCATGTA-CTATCTTAAGTCCACACTTCTTCCTGTTTCATCTGATCTACTGAAACTTTCC 3066
||| || | |||| ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 3174 CCACATATC-ATCTGAAGTCCACACTTCTTCCGGTTTCATCTGATCTGCTGAAGCTTTCC 3232
Query 3067 CTGAGATTTCTTGAACAAGGATCCGAAAAGGAAAAGCTGGCTGGCGCTAAACTGATGGCA 3126
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 3233 CTGAGATTTCTTGAACAAGGATCCGAAAAGGAAAAGCTGGCTGGCGCAAAACTAATGGCA 3292
Query 3127 TCTCTGATGGCGAGTGAAGACATGATACTGGAAAACATTTCAGAGGGATTGCTCGAAGCA 3186
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3293 TCACTGATGGCGAGTGAAGACGTGATACTGGAAAACATTTCAGAGGGATTGCTCGAAGCA 3352
Query 3187 AGATCAGTTCTATCCAAAGCATCTTTGTCAGATCCTTCTCAAGACGTACGTGAAGTCTGT 3246
||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 3353 AGATCAGTTCTGTCCAAAGCATCTTTGTCAGACCCTTCTCGAGACGTACGTGAAGTCTGC 3412
Query 3247 GCTAAGCTCTTGGCATGCATAACGCCGTTGTAA--CC-TGTGTTCTTCtt-tt-tt-t-- 3298
|||||||| |||||||||||||||||||||||| || | |||||||||| || || |
Sbjct 3413 GCTAAGCTATTGGCATGCATAACGCCGTTGTAAAGCCATTTGTTCTTCTTCTTCTTCTTC 3472
Query 3299 ------GCCACTTTTGGTTTGTTC--G--TGCCAATGAAGTCGGTATGTAGATATGTGGT 3348
|||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 3473 TTTTTTGCCACTTTTGGTTTGTTCTCGCGTGCCAATGAAGTCGGTATGTAGATATGTTGT 3532
Query 3349 AGCAAACGGTGGCCTAACTTTAATATTATGTAATATGCAAAGACCAAATACGTTTTAGTA 3408
|||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 3533 AGCAAACGATGGCCTAACTATAATCTTATGTAATATGCAAAGACCAAATACGTTTTAGTA 3592
Query 3409 ACCAGTTATGGTCGGAACCTGCAGCTACCATTGTGT 3444
|||||||||||| | ||||||||||||||||| |||
Sbjct 3593 ACCAGTTATGGT-G-AACCTGCAGCTACCATTTTGT 3626
Score = 1218 bits (659), Expect = 0.0
Identities = 784/842 (93%), Gaps = 18/842 (2%)
Strand=Plus/Plus
Query 41 TGGAAGAGGAATTGATACGAATATCAGAACCGGAGTCTCTAGTCTCCGTCACTGTAGGTA 100
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 156 TGGAGGAGGAATTGATACGAAGATCAGAACCGGAGTCTCTAGTCTCCGTCACTGTAGCTA 215
Query 101 GGTTCATGAGAACGCTTCTCTCAGCTCGCCCTAAAAAGCTACGAGAGTCTGTTTCCCGTC 160
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 216 GGTTCATGAGTACGCTTCTCTCAGCTCGCCCTAAAAAGCTACGAGAGTCTATTTCTCGTC 275
Query 161 TTTCTCCTGATTCTCAAAAGGGT-TCCTCAGGCTCTATCGATGAGGCACTCTGGTTTTTG 219
| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 276 TAACTCCTGATTCTCAAAAGGGTGT-CTCAGGCTCTATCGATGAGGCACTCTGGTTTTTG 334
Query 220 GAAAAGTGCGTTAGAGACGCTGCTCAGAGAGACGAAGCCATGGGTGAAATTCTTGTACCC 279
||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 335 GAAAAGTGCGTTATAGACGCTGCTGAGAGAGACGAAGCCATGAGTGAAATTCTTGTACCC 394
Query 280 ATTATCGAACATACATTAAGGTTTAAGGATTCTAAGCATGGTAATCCAGCTATGATACTT 339
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 395 ATTATCGAACATACATTAAGGTTTAAGGATTCTAAGCATGGTAACCCAGCTATGATACTT 454
Query 340 CTAAATTGGCTATTTCAAGATGAAGTTCTCTTTCAAGCCCTTTCGAGAAATCTTTCGAAT 399
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 455 CTAAATTGGCTATTTCAAGATGAAGTTCTCTTTCAAGCCGTTTCGAGAAATCTTTCGAAT 514
Query 400 ATCATTTCT-AGGAACGAGGATAGGATTTTAGCGCTTGGATGGTGTTTACTTATCCGACG 458
||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 515 ATCATTT-TGAGGAACGAGGACAGGTTTTTAGCGCTTGGATGGTGTTTACTTATCCGACG 573
Query 459 TCTTGTAGAATGCGACGATACTGGGGATCAAAGTTTTTGGCATGGAATTAGGGAGAAACA 518
|||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 574 TCTTGTAGAATGTGAGGATACTGGGGATCAAGGTTTTTGGCATGGAATTAGGGAGAAACA 633
Query 519 TTCTATGTTTGTGGAGATTGTTTCATCTTGTGTGCCTCACTTGTCGATCATTGTACGCGA 578
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 634 TTCTATGTTTGTGGAGATTGTTTCATCTTGTGTGCCTCACTTGTTGATGATTGTACGCAA 693
Query 579 TGGAAGC-AT-----TT-TA---CA--GGATGGATATGAAGTGCCATCTCGTCTTTCTCT 626
|||||| || || | || |||||||||||| ||||||||||||||||||||
Sbjct 694 TGGAAGGTATAAAACTTCTTTGTCAATGGATGGATATGAGGTGCCATCTCGTCTTTCTCT 753
Query 627 TTCTGCTGCTGATTGCTTGCTGTCAATTACTGGAGCCTTAGCAAAGAGGGATAATACTCT 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TTCTGCTGCTGATTGCTTGCTGTCAATTACTGGAGCCTTAGCAAAGAGGGATAATACTCT 813
Query 687 GGTCAATAAACCAAAGCCATCAACCATTATGGGGTCTCATCAACCCGTTGCTTTGATACC 746
| |||||| ||||||| || ||||||||| ||||||||||||||| |||||||||| |||
Sbjct 814 GATCAATAGACCAAAGTCACCAACCATTACGGGGTCTCATCAACCTGTTGCTTTGACACC 873
Query 747 TCATATTAGCGAGAAGaaaaaaaaG-CAGAGTTTTCTACCTGAAGACTCGAACATTGAGG 805
| ||||||| ||||| ||||||||| | || || ||||||||||||||| |||||||||
Sbjct 874 TAATATTAGTGAGAA-AAAAAAAAGGCCGACTTCTCTACCTGAAGACTCAAACATTGAGA 932
Query 806 CAAATTGTATACTGTGGAACCACCTGGAGGATCTGACACGCCTTGTACAATGTCTCTTTG 865
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 933 CAAATTGTATACTGTGGAACCACATGGAGGATCTGACACGCCTTGTACAATGTCTTTTTG 992
Query 866 CT 867
||
Sbjct 993 CT 994
Score = 922 bits (499), Expect = 0.0
Identities = 638/700 (91%), Gaps = 30/700 (4%)
Strand=Plus/Plus
Query 1073 AGGGAAAGAAATTTGAGTGCATACTATCAGAGTATGGAATGAGGCTCGTGCCT-TGTCTT 1131
||||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||
Sbjct 1341 AGGGAAAGAAATTTGAGAGCATACTATCAGAGTATGGAATGAAGCTCGTGCCTAT-TCTT 1399
Query 1132 CTACATCAGCTTCGCAGTAACAATGAAGAGATATCAGAAGACGTTGTTGCTATATTTAAG 1191
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1400 CTACATCAGCTTCGCAGTAACAATGAAGAGATATCAGAAGGCGTTGTGGCTATATTTAAG 1459
Query 1192 GCAGTCATCTTTAAACTACAATCTCAGTCCGGAGACAGCTTTTCGGATACAATGTGCATG 1251
|||||| |||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1460 GCAGTCTTCTTTAAATTACAATCTCAGTCCGGAGACAGCTTCTCTGATACAATGTGCATG 1519
Query 1252 GATGTTGTGATACCATCGCTGCTTCACCTTCTTGATGAAAGGGATGGCGCGGCCAAAGCT 1311
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 GACGTTGTGATACCATCACTGCTTCACCTTCTTGATGAAAGGGATGGCGCGGCCAAAGCT 1579
Query 1312 GTTAGTGTCCTCCT--C-G-C---TG--------A--C---T-ATTG-T-TC-CAATGAA 1347
||||||||||| || | | | || | | | || | | || || ||||
Sbjct 1580 GTTAGTGTCCTGCTGGCAGACTATTGTTCCAAAAATGCAGGTAATAGCTGTCTCAGTGAA 1639
Query 1348 ATTCTGCAACGCCTTGTTTCTGGAACTTCTGTGCAAAGGCTGAATTCTATGGATGTGATA 1407
||||| |||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1640 ATTCTACAACGCCTTGCTTCTGGAACTACTGTGCAAAGGCTGAATTCTTTGGATGTGATA 1699
Query 1408 TCAGAAGTAATCCTTATGTCAAAAGATTCATTTCCTTCTCATATACACTGGAAAGAGATT 1467
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1700 TCAGAAGTAATCCTTATGTCAAAAGATTCATTTCCTTCTCATATACCCTGGAAAGAGATT 1759
Query 1468 GCGGACTGCTTGTTAAAGTGCCTTGGA-GACGAGGAAACTTGTATCTGTAAACAAACTTC 1526
||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 1760 GCGGACTGCTTGTTAAAGTGCCTTG-ATGACGAGGAAACATGTATCTGTAAACAAACTTC 1818
Query 1527 AGAGTTGCTGAAGTCAATTGAGCCATCTTTTGTGCTACCAGA-TTTAGTAACCCTCATTT 1585
|||||||||||||||||| |||||||| ||||||||||| || |||||||| ||||||||
Sbjct 1819 AGAGTTGCTGAAGTCAATCGAGCCATCATTTGTGCTACC-GAATTTAGTAAACCTCATTT 1877
Query 1586 ATGCACCCAATGGAAAAGTACACTCATCAGCTACCGAAACCTTACTTGGGGTCCTGAAAC 1645
|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 1878 ATGCACCCAATGGAAAAGTACAATCATCAGCTACAGAAACCTTGCTTGGGGTCCTGAAAC 1937
Query 1646 ATCATAAGGAGGATTCTGATGTTATATGTATGTTGCTGACCTGTCTAAGTAATATTCAAG 1705
| ||||||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 1938 ACCATAAGGAGGATTTTGATGTTATATGTATGTTGCTGACCAGTCTTAGTAATATCCAAG 1997
Query 1706 CTTTGGATACTTCAGAAAGCAATGGACATTCCACTGAAGG 1745
||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1998 CTTTGGATACTGCAGAAAGTAATGGACATTCCACTGAAGG 2037
Score = 316 bits (171), Expect = 7e-85
Identities = 196/208 (94%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 868 GGGTTAAGTCAAGTGCTGAAGTGGTTA-ATTGAGTTAAAAGAGCATCATGGTGGCTCCCA 926
|||||||||||||||||||| |||||| | ||||| |||||||||||||||||||||||
Sbjct 1028 GGGTTAAGTCAAGTGCTGAAATGGTTAGA-GGAGTTGAAAGAGCATCATGGTGGCTCCCA 1086
Query 927 AAAGGAAGCAGGCACAGCGGCATCTGCGGGTGGAGCTCTACTGCTCTCTTCTTGTTGGAG 986
|||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 1087 AAAGGAGGCAGGCACAGAGGTATCTATGGGTGGAGCTCTACTGCTCTCTTCTTGTTGGAA 1146
Query 987 GCATTACAGTGTCTTGCTCCACATGGAAGATCAAAAGTTTTCAAAGATTAGTAAGGAATT 1046
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1147 GCATTACAGTGTCTTGCTCCACATGGAAGATCAAAAGTTCTCAAAGATTAGTAAGGAATT 1206
Query 1047 GTTGGAGCAATATTTGTCTGGTATTAAG 1074
||||||||||||||||||||||||||||
Sbjct 1207 GTTGGAGCAATATTTGTCTGGTATTAAG 1234
Score = 54.7 bits (29), Expect = 6e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1 TTCTTCGTCGTCTCCGCGAGATTGCTACAAAT 32
||| ||||||||||||||||||||||||||||
Sbjct 56 TTCGTCGTCGTCTCCGCGAGATTGCTACAAAT 87
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 171470611174
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5