BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486206 Length=3445 Score E Sequences producing significant alignments: (Bits) Value AT3G57570.2 | Symbols: | ARM repeat superfamily protein | chr3... 2344 0.0 > AT3G57570.2 | Symbols: | ARM repeat superfamily protein | chr3:21312444-21320365 FORWARD LENGTH=3705 Length=3705 Score = 2344 bits (1269), Expect = 0.0 Identities = 1493/1596 (94%), Gaps = 36/1596 (2%) Strand=Plus/Plus Query 1881 AGGTTCAACTTTTGACAGTGATCGAGTGCTAAAAATGATACCAGAGTGGGCTAAAAGTGT 1940 ||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |||||| Sbjct 2035 AGGTTTAACTTTTGACAGTGATCGAGTGCTAAAGCTGATCCCAGAGTGGGCTAGAAGTGT 2094 Query 1941 ACAAAACTGGGACTCACTGATCGGACCTTTGCTTGACAAAATGTTCTTGGAGCCATCCAA 2000 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2095 ACAAAACTGGAACTCACTGATCGGACCTTTGCTTGACAAGATGTTCTTGGAGCCATCCAA 2154 Query 2001 TGCCATCATCGTTAGGTTTCTTAGTTGCATCAGTGAATATTTGGCAGATACGTCGGACTT 2060 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2155 TGCCATCATGGTTAGGTTTCTTAGTTGCATCAGTGAATCTTTGGCAGATACGTCGGACTT 2214 Query 2061 GGTCCTTCCGCATGTACTTTCACATATGAAGAAGCAAAACAAGGTGGATGAGAGCTTCAT 2120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2215 GGTCCTTCCGCATGTACTTTCACATATGAAGAAGCAAAACAAGGTGGATGCGAGCTTCAT 2274 Query 2121 ATCCAGATCTGATACTAAAAGTTCAGTTGACAAAGCTAAATCGGAGAAATCTCTATTTGA 2180 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2275 ATCCAGATCTGATACTAAAAGTTCAGTTGACAAAACTAAATCGGAGAAATCTCTATTTGA 2334 Query 2181 CCACCTTTGCCCACTGCTTATATTAAGACTGCTTCCCCAAAGAGTGTTTGATGATATTGA 2240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2335 CCACCTTTGCCCACTGCTTATATTAAGACTGCTTCCCCAAAGAGTGTTTGATGATATTGA 2394 Query 2241 TTCTTCTACAATTTATGGTAAATTCCTCAGCGGGGACTCTGTGAATGAGTACCAAGACAT 2300 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2395 TTCTTCTACAATTTATGGTAAATTCCTCAGCGGGGACTCTGTGAATGACTACCAAGACAT 2454 Query 2301 CAAGTTTGAGGATTGCCAATGCATTGCCGCTTTCATTTTGGAAAGGGCATTTTCTAAGTT 2360 ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 2455 CAAGTTTGAGGATTGTCAATGCATTGCTACTTTCATTTTGGAAAGGGCATTTTCTAAGTT 2514 Query 2361 CGAATTTGAAGAAGTTCGGAAACTCTCTGCTGAGCTATGTGGACGTCTCCATCCCCAGGT 2420 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2515 TGAATTTGAAGAAGTTCGGAAACTCTCTGCTGAGTTATGTGGACGTCTCCATCCCCAGGT 2574 Query 2421 GCTATTTCCAACTGTTTTATTGCAACTTGAAAAGGCCACAGAGCTACAAGACAGCCTCAA 2480 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 2575 GCTATTTCCAACTGTTTTATTGCAACTCGAAAAGGCCACAGAGATACAAGACAGCCTCAA 2634 Query 2481 GATTAAAGCTTGCCTATTTTCTATATGCACATCCCTTGTGGTTCGAGGCTGGGAGTCTTT 2540 ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| | Sbjct 2635 GATTAAAGCTTGCCTATTTTCTATATGCACATCTCTTATGGTCCGAGGCTGGGAGTCTCT 2694 Query 2541 CTCACACAGTGTGACACCTAAGATCAGAAAAGTCCTGGAAAATATTTTGTTATGGCCTTC 2600 ||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2695 CTCACACAGAGTAACACCTAAGATCAGGAAAGTCCTGGAAAATATTTTGTTATGGCCTTC 2754 Query 2601 TGTTGAAGATGAAATTTCCAAAGTACAACATGGGTGCATTGATTGTCTGGCACTGATGAT 2660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2755 TGTTGAAGATGAAATTTCCAAAGTACAACATGGGTGCATTGATTGTCTGGCACTGATGAT 2814 Query 2661 ATGTGCTGAACTTCAACATCTTAAATCTTTGAAAACATCTGGAGGAGAACAAATACGTAC 2720 |||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| | Sbjct 2815 ATGTGCTGAACTGCAACATCTTAAATCTTCAAAAACATCTGGAGGAGAAAAAATACGTTC 2874 Query 2721 AACAGAGGA-GGACACATCTGGTAATTCTGTCCTAGATTACACGATCCATTGTTTAGTAG 2779 ||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||| Sbjct 2875 AACAG-GGAAGGACACATCTGGTTATTCTGTCCTAGATTACACTATCCATTGTTTAATAG 2933 Query 2780 AAGACAGAAGTAACTGCTCGTCTATCCCAAAGCTGAGTACTG------------GTGAAA 2827 ||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 2934 AAGACCGAAGTAACTGCTCGTCTATCCCAAAGCTGAGTACTGATATCCTAACTTGTGAAA 2993 Query 2828 ATCCTCTTCCTATTCCATTTCGTCTGTGCATGGCAAATGTGATCATTAGTGCTTGTCAAA 2887 ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| Sbjct 2994 ATCCTCTTCCTATTCCATTTCGTCTATGCATGGCAAATGTTATCATCAGTGCTTGTCAAA 3053 Query 2888 AAATCCCCGAGTCTTCCAAGAAGACTTTTGCTCGAAAAGCTCTTCCGCCTCTTGTTCATT 2947 ||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 3054 AAAACCCTGAGTCTTCCAAGAAGACTTTTGCCCGAAAAGCTCTTCCGCCTCTTATTCATT 3113 Query 2948 CCCTCAAGGTCATATCTGCACCTGAGGTCCGTGCAGCCTGTATCCAAGTCTTATTCTCGG 3007 |||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||||| Sbjct 3114 CCCTCAAGGTCATATCTGTACCGGAGGTCCGTGCAGCTTGTATCCAGGTCTTATTCTCGG 3173 Query 3008 CCATGTA-CTATCTTAAGTCCACACTTCTTCCTGTTTCATCTGATCTACTGAAACTTTCC 3066 ||| || | |||| ||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 3174 CCACATATC-ATCTGAAGTCCACACTTCTTCCGGTTTCATCTGATCTGCTGAAGCTTTCC 3232 Query 3067 CTGAGATTTCTTGAACAAGGATCCGAAAAGGAAAAGCTGGCTGGCGCTAAACTGATGGCA 3126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 3233 CTGAGATTTCTTGAACAAGGATCCGAAAAGGAAAAGCTGGCTGGCGCAAAACTAATGGCA 3292 Query 3127 TCTCTGATGGCGAGTGAAGACATGATACTGGAAAACATTTCAGAGGGATTGCTCGAAGCA 3186 || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 3293 TCACTGATGGCGAGTGAAGACGTGATACTGGAAAACATTTCAGAGGGATTGCTCGAAGCA 3352 Query 3187 AGATCAGTTCTATCCAAAGCATCTTTGTCAGATCCTTCTCAAGACGTACGTGAAGTCTGT 3246 ||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 3353 AGATCAGTTCTGTCCAAAGCATCTTTGTCAGACCCTTCTCGAGACGTACGTGAAGTCTGC 3412 Query 3247 GCTAAGCTCTTGGCATGCATAACGCCGTTGTAA--CC-TGTGTTCTTCtt-tt-tt-t-- 3298 |||||||| |||||||||||||||||||||||| || | |||||||||| || || | Sbjct 3413 GCTAAGCTATTGGCATGCATAACGCCGTTGTAAAGCCATTTGTTCTTCTTCTTCTTCTTC 3472 Query 3299 ------GCCACTTTTGGTTTGTTC--G--TGCCAATGAAGTCGGTATGTAGATATGTGGT 3348 |||||||||||||||||| | |||||||||||||||||||||||||||| || Sbjct 3473 TTTTTTGCCACTTTTGGTTTGTTCTCGCGTGCCAATGAAGTCGGTATGTAGATATGTTGT 3532 Query 3349 AGCAAACGGTGGCCTAACTTTAATATTATGTAATATGCAAAGACCAAATACGTTTTAGTA 3408 |||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 3533 AGCAAACGATGGCCTAACTATAATCTTATGTAATATGCAAAGACCAAATACGTTTTAGTA 3592 Query 3409 ACCAGTTATGGTCGGAACCTGCAGCTACCATTGTGT 3444 |||||||||||| | ||||||||||||||||| ||| Sbjct 3593 ACCAGTTATGGT-G-AACCTGCAGCTACCATTTTGT 3626 Score = 1218 bits (659), Expect = 0.0 Identities = 784/842 (93%), Gaps = 18/842 (2%) Strand=Plus/Plus Query 41 TGGAAGAGGAATTGATACGAATATCAGAACCGGAGTCTCTAGTCTCCGTCACTGTAGGTA 100 |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 156 TGGAGGAGGAATTGATACGAAGATCAGAACCGGAGTCTCTAGTCTCCGTCACTGTAGCTA 215 Query 101 GGTTCATGAGAACGCTTCTCTCAGCTCGCCCTAAAAAGCTACGAGAGTCTGTTTCCCGTC 160 |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 216 GGTTCATGAGTACGCTTCTCTCAGCTCGCCCTAAAAAGCTACGAGAGTCTATTTCTCGTC 275 Query 161 TTTCTCCTGATTCTCAAAAGGGT-TCCTCAGGCTCTATCGATGAGGCACTCTGGTTTTTG 219 | |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 276 TAACTCCTGATTCTCAAAAGGGTGT-CTCAGGCTCTATCGATGAGGCACTCTGGTTTTTG 334 Query 220 GAAAAGTGCGTTAGAGACGCTGCTCAGAGAGACGAAGCCATGGGTGAAATTCTTGTACCC 279 ||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 335 GAAAAGTGCGTTATAGACGCTGCTGAGAGAGACGAAGCCATGAGTGAAATTCTTGTACCC 394 Query 280 ATTATCGAACATACATTAAGGTTTAAGGATTCTAAGCATGGTAATCCAGCTATGATACTT 339 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 395 ATTATCGAACATACATTAAGGTTTAAGGATTCTAAGCATGGTAACCCAGCTATGATACTT 454 Query 340 CTAAATTGGCTATTTCAAGATGAAGTTCTCTTTCAAGCCCTTTCGAGAAATCTTTCGAAT 399 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 455 CTAAATTGGCTATTTCAAGATGAAGTTCTCTTTCAAGCCGTTTCGAGAAATCTTTCGAAT 514 Query 400 ATCATTTCT-AGGAACGAGGATAGGATTTTAGCGCTTGGATGGTGTTTACTTATCCGACG 458 ||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 515 ATCATTT-TGAGGAACGAGGACAGGTTTTTAGCGCTTGGATGGTGTTTACTTATCCGACG 573 Query 459 TCTTGTAGAATGCGACGATACTGGGGATCAAAGTTTTTGGCATGGAATTAGGGAGAAACA 518 |||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 574 TCTTGTAGAATGTGAGGATACTGGGGATCAAGGTTTTTGGCATGGAATTAGGGAGAAACA 633 Query 519 TTCTATGTTTGTGGAGATTGTTTCATCTTGTGTGCCTCACTTGTCGATCATTGTACGCGA 578 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | Sbjct 634 TTCTATGTTTGTGGAGATTGTTTCATCTTGTGTGCCTCACTTGTTGATGATTGTACGCAA 693 Query 579 TGGAAGC-AT-----TT-TA---CA--GGATGGATATGAAGTGCCATCTCGTCTTTCTCT 626 |||||| || || | || |||||||||||| |||||||||||||||||||| Sbjct 694 TGGAAGGTATAAAACTTCTTTGTCAATGGATGGATATGAGGTGCCATCTCGTCTTTCTCT 753 Query 627 TTCTGCTGCTGATTGCTTGCTGTCAATTACTGGAGCCTTAGCAAAGAGGGATAATACTCT 686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 754 TTCTGCTGCTGATTGCTTGCTGTCAATTACTGGAGCCTTAGCAAAGAGGGATAATACTCT 813 Query 687 GGTCAATAAACCAAAGCCATCAACCATTATGGGGTCTCATCAACCCGTTGCTTTGATACC 746 | |||||| ||||||| || ||||||||| ||||||||||||||| |||||||||| ||| Sbjct 814 GATCAATAGACCAAAGTCACCAACCATTACGGGGTCTCATCAACCTGTTGCTTTGACACC 873 Query 747 TCATATTAGCGAGAAGaaaaaaaaG-CAGAGTTTTCTACCTGAAGACTCGAACATTGAGG 805 | ||||||| ||||| ||||||||| | || || ||||||||||||||| ||||||||| Sbjct 874 TAATATTAGTGAGAA-AAAAAAAAGGCCGACTTCTCTACCTGAAGACTCAAACATTGAGA 932 Query 806 CAAATTGTATACTGTGGAACCACCTGGAGGATCTGACACGCCTTGTACAATGTCTCTTTG 865 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 933 CAAATTGTATACTGTGGAACCACATGGAGGATCTGACACGCCTTGTACAATGTCTTTTTG 992 Query 866 CT 867 || Sbjct 993 CT 994 Score = 922 bits (499), Expect = 0.0 Identities = 638/700 (91%), Gaps = 30/700 (4%) Strand=Plus/Plus Query 1073 AGGGAAAGAAATTTGAGTGCATACTATCAGAGTATGGAATGAGGCTCGTGCCT-TGTCTT 1131 ||||||||||||||||| |||||||||||||||||||||||| |||||||||| | |||| Sbjct 1341 AGGGAAAGAAATTTGAGAGCATACTATCAGAGTATGGAATGAAGCTCGTGCCTAT-TCTT 1399 Query 1132 CTACATCAGCTTCGCAGTAACAATGAAGAGATATCAGAAGACGTTGTTGCTATATTTAAG 1191 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 1400 CTACATCAGCTTCGCAGTAACAATGAAGAGATATCAGAAGGCGTTGTGGCTATATTTAAG 1459 Query 1192 GCAGTCATCTTTAAACTACAATCTCAGTCCGGAGACAGCTTTTCGGATACAATGTGCATG 1251 |||||| |||||||| ||||||||||||||||||||||||| || ||||||||||||||| Sbjct 1460 GCAGTCTTCTTTAAATTACAATCTCAGTCCGGAGACAGCTTCTCTGATACAATGTGCATG 1519 Query 1252 GATGTTGTGATACCATCGCTGCTTCACCTTCTTGATGAAAGGGATGGCGCGGCCAAAGCT 1311 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1520 GACGTTGTGATACCATCACTGCTTCACCTTCTTGATGAAAGGGATGGCGCGGCCAAAGCT 1579 Query 1312 GTTAGTGTCCTCCT--C-G-C---TG--------A--C---T-ATTG-T-TC-CAATGAA 1347 ||||||||||| || | | | || | | | || | | || || |||| Sbjct 1580 GTTAGTGTCCTGCTGGCAGACTATTGTTCCAAAAATGCAGGTAATAGCTGTCTCAGTGAA 1639 Query 1348 ATTCTGCAACGCCTTGTTTCTGGAACTTCTGTGCAAAGGCTGAATTCTATGGATGTGATA 1407 ||||| |||||||||| |||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1640 ATTCTACAACGCCTTGCTTCTGGAACTACTGTGCAAAGGCTGAATTCTTTGGATGTGATA 1699 Query 1408 TCAGAAGTAATCCTTATGTCAAAAGATTCATTTCCTTCTCATATACACTGGAAAGAGATT 1467 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1700 TCAGAAGTAATCCTTATGTCAAAAGATTCATTTCCTTCTCATATACCCTGGAAAGAGATT 1759 Query 1468 GCGGACTGCTTGTTAAAGTGCCTTGGA-GACGAGGAAACTTGTATCTGTAAACAAACTTC 1526 ||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| Sbjct 1760 GCGGACTGCTTGTTAAAGTGCCTTG-ATGACGAGGAAACATGTATCTGTAAACAAACTTC 1818 Query 1527 AGAGTTGCTGAAGTCAATTGAGCCATCTTTTGTGCTACCAGA-TTTAGTAACCCTCATTT 1585 |||||||||||||||||| |||||||| ||||||||||| || |||||||| |||||||| Sbjct 1819 AGAGTTGCTGAAGTCAATCGAGCCATCATTTGTGCTACC-GAATTTAGTAAACCTCATTT 1877 Query 1586 ATGCACCCAATGGAAAAGTACACTCATCAGCTACCGAAACCTTACTTGGGGTCCTGAAAC 1645 |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| Sbjct 1878 ATGCACCCAATGGAAAAGTACAATCATCAGCTACAGAAACCTTGCTTGGGGTCCTGAAAC 1937 Query 1646 ATCATAAGGAGGATTCTGATGTTATATGTATGTTGCTGACCTGTCTAAGTAATATTCAAG 1705 | ||||||||||||| ||||||||||||||||||||||||| |||| |||||||| |||| Sbjct 1938 ACCATAAGGAGGATTTTGATGTTATATGTATGTTGCTGACCAGTCTTAGTAATATCCAAG 1997 Query 1706 CTTTGGATACTTCAGAAAGCAATGGACATTCCACTGAAGG 1745 ||||||||||| ||||||| |||||||||||||||||||| Sbjct 1998 CTTTGGATACTGCAGAAAGTAATGGACATTCCACTGAAGG 2037 Score = 316 bits (171), Expect = 7e-85 Identities = 196/208 (94%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 868 GGGTTAAGTCAAGTGCTGAAGTGGTTA-ATTGAGTTAAAAGAGCATCATGGTGGCTCCCA 926 |||||||||||||||||||| |||||| | ||||| ||||||||||||||||||||||| Sbjct 1028 GGGTTAAGTCAAGTGCTGAAATGGTTAGA-GGAGTTGAAAGAGCATCATGGTGGCTCCCA 1086 Query 927 AAAGGAAGCAGGCACAGCGGCATCTGCGGGTGGAGCTCTACTGCTCTCTTCTTGTTGGAG 986 |||||| |||||||||| || |||| |||||||||||||||||||||||||||||||| Sbjct 1087 AAAGGAGGCAGGCACAGAGGTATCTATGGGTGGAGCTCTACTGCTCTCTTCTTGTTGGAA 1146 Query 987 GCATTACAGTGTCTTGCTCCACATGGAAGATCAAAAGTTTTCAAAGATTAGTAAGGAATT 1046 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1147 GCATTACAGTGTCTTGCTCCACATGGAAGATCAAAAGTTCTCAAAGATTAGTAAGGAATT 1206 Query 1047 GTTGGAGCAATATTTGTCTGGTATTAAG 1074 |||||||||||||||||||||||||||| Sbjct 1207 GTTGGAGCAATATTTGTCTGGTATTAAG 1234 Score = 54.7 bits (29), Expect = 6e-06 Identities = 31/32 (97%), Gaps = 0/32 (0%) Strand=Plus/Plus Query 1 TTCTTCGTCGTCTCCGCGAGATTGCTACAAAT 32 ||| |||||||||||||||||||||||||||| Sbjct 56 TTCGTCGTCGTCTCCGCGAGATTGCTACAAAT 87 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 171470611174 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5