BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486208
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57590.1 | Symbols: | F-box and associated interaction doma... 1701 0.0
AT3G57580.1 | Symbols: | F-box and associated interaction doma... 394 1e-108
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 71.3 2e-11
> AT3G57590.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:21330182-21331396 REVERSE LENGTH=1215
Length=1215
Score = 1701 bits (921), Expect = 0.0
Identities = 1115/1209 (92%), Gaps = 12/1209 (1%)
Strand=Plus/Plus
Query 1 ATGGAACCAATCCCAACTGATCTCATTATCGAGATATTCTCGAGATTGCCGGCGAAGTCA 60
|||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAACCAATCCCAAATGATCTCATTCTCGAGATCTTCTCGAGATTGCCGGCGAAGTCA 60
Query 61 GTCGCTGGATTTCGTACAC-TGTCGAAGCACTGGGCGTCTACGCTTCGCAGTCCAGGTTT 119
||| |||||||||||| | ||||||||||||||||||||| |||||||||||||| |||
Sbjct 61 GTCATTGGATTTCGTAC-CTTGTCGAAGCACTGGGCGTCTATGCTTCGCAGTCCAGTTTT 119
Query 120 CACCGAGCTCTTCCAGACCAGATCCTCGAATCGTCCGCGTCT-CTTGTTGGCGGCCGAAC 178
|||||||||||||| ||||||||||||||||||||| ||||| | |||| || |||||||
Sbjct 120 CACCGAGCTCTTCCTGACCAGATCCTCGAATCGTCCACGTCTGC-TGTTTGCTGCCGAAC 178
Query 179 GAAATGGTGAGTGGCTCTTCTTCTCGTCGCCTCAGCCACAGAATCGATATGAGAAGTCGT 238
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 179 GAAATGGTGAGTGGCTCTTCTTCTCGTCGCCGCAGCCACAGAATCGATATGAGAAGTCTT 238
Query 239 CTCATTTGGATTATCATACCAAGTTCTCAGGAGACGTTAGCCGATACATTTGTAGCTATG 298
||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||
Sbjct 239 CTCATTTGGATTATCATACAAAATTCTCAGGAGACGTAAGCCGATTCATTTGTAGCTATG 298
Query 299 CT-TCAGGTTTGCTCTATTTTCCTGATTTGTGGCTCTCAAAAGATGCGTCGCCTGTGATT 357
| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 299 -TCTCAGGTTTGCTCTGTTTCCCTGATTTGTGGCTCTCAAAAGATGCATCGCCTGTGATT 357
Query 358 TGTAACCCTATCACCGGAATGTATGAGAGCTTACCTGATCTGATGAGGTACAGAAATTCT 417
|||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 358 TGTAACCCTACCACAGGAATGTATGAGAGCTTACCTGATCTGATGAGGTACAAAAATGCT 417
Query 418 CGAGGCTTTTTAGGGTTTGATTCCATTGATAAGCAATTCAAGGTATTGTCTGAGGCTTAT 477
||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 418 CGAGGCTTTCTAGGGTTTGATCCCATTGGTAAGCAATTCAAGGTATTGTCTGAGGCTTAT 477
Query 478 CCGTTTTGTGATCAAAGGGAACATCATGAGATTCTGTCATTAGGAACTGGA-GAACTGAG 536
|| |||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 478 CCATTTTCTGATCAAAGGGAACATCATGAGATTCTGACATTAGGAACT-GAGGAACTGAG 536
Query 537 CTGGAGGAGTAATATCATCAGTTGTCCTGCATACGATCGTTCTTTGAGTGAAGGGATATG 596
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 537 CTGGAGGAGTAATATCATTAGTTGTCCTGCATATGATCGTTCTTTGAGTGAAGGAATATG 596
Query 597 CATCAATGGAGTTTTCTATTACTTAGCTCAGACAGTTGGGGTGTCGTCTTGTGTGATCAT 656
|||||||||||||| ||||||||||||||||| |||| || ||||||||||||||||
Sbjct 597 TATCAATGGAGTTTTGTATTACTTAGCTCAGACTCTTGGTGTACCGTCTTGTGTGATCAT 656
Query 657 TCGCGTTGATGTTAGGTCTGAGGAGTTCAAGT-TTATTGACGCAGAATGCTTTAATGATC 715
| || ||||||| ||||||||||| || |||| || ||||||||| ||||||||||||||
Sbjct 657 TTGCTTTGATGTAAGGTCTGAGGAATTTAAGTATT-TTGACGCAGGATGCTTTAATGATC 715
Query 716 AACTTGATGATACTAGTGAGTTGATTTTGGTCAACTATGTGGGTAAATTAGGAGGGATTA 775
|||||||||||||||||| |||||||||||| ||||||| |||||||||| | |||||||
Sbjct 716 AACTTGATGATACTAGTGGGTTGATTTTGGTAAACTATGAGGGTAAATTAAGTGGGATTA 775
Query 776 ATTGGAAGTATTGTCAAGCTGGTGAAAGGCGTACCGTTGAGTTGTC-TATGTCGGTTCTA 834
||||||||||| ||||||||||||||||||| |||||||||||| | ||||| |||||||
Sbjct 776 ATTGGAAGTATGGTCAAGCTGGTGAAAGGCGCACCGTTGAGTTG-CGTATGTGGGTTCTA 834
Query 835 GAGGATGTCGAGAAGCAGGAATGGGTTAAATATGTCTATAGTCTGCCTGAGAATGAAGTC 894
||||||| ||||||||| ||||||||||||||||| || | |||||| ||||||||||||
Sbjct 835 GAGGATGCCGAGAAGCATGAATGGGTTAAATATGTGTACACTCTGCCGGAGAATGAAGTC 894
Query 895 CTTGATTCCTGCGATTTTTCAGTTGCTGGAGTGACCACTAGAGGTGACATTGTATTGTGT 954
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 895 CTTGATTCCTGCGACTTTTCAGTTGCTGGAGTGACTACTAGAGGTGATATTGTTTTGTGT 954
Query 955 ATGAAGTATACATGTAAACTGTTTTATGTGTTCTACTTCGATCCCGAGAGGAACACTCTC 1014
||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 955 ATGAAATATACATGTAAACCGTTTTATGTGTTCTACTTCAATCCCGAGAGGAACACTCTC 1014
Query 1015 CAAAGCGTTGAAATCCAAGGTTTTGGAGCTAACCTTGAAGCGGTTGGGAATCGTGGTAGA 1074
|| |||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||
Sbjct 1015 CAGAGCGTTGAAATCCAAGATTTTGGAGCTAACCTTGAAGCGGTTGAGAATTGTGGTAGA 1074
Query 1075 GTTTATGCCTTTGTTAACCATGTAGAGGATCTTAGTGTTGACGATGCAAAGCAACTCAAG 1134
|||||||| |||||||||||||||||||||||| | ||| || | | ||||||||||||
Sbjct 1075 GTTTATGCTTTTGTTAACCATGTAGAGGATCTTCGGGTTAACAAAGGGAAGCAACTCAAG 1134
Query 1135 TCAAGCATCTCTCAAGTCAAGCATCTCTGCTCCTGCTGTAATAAAGTATCGCAGCCTAAT 1194
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 1135 TCAAGCATCTCTCAAGTCAAGCATCTCTGCTCATGCTGTAACAAAGTATCGCAGCCTGAT 1194
Query 1195 TATCATTAC 1203
|||||||||
Sbjct 1195 TATCATTAC 1203
> AT3G57580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:21320491-21322379 REVERSE LENGTH=1889
Length=1889
Score = 394 bits (213), Expect = 1e-108
Identities = 388/468 (83%), Gaps = 30/468 (6%)
Strand=Plus/Plus
Query 11 TCCCAACTGATCTCATTATCGAGATATTCTCGAGATTGCCGGCGAAGTCAGTCGCT-GGA 69
||||||||||||||||| |||||| ||| |||||||||| |||||||||| ||| ||
Sbjct 382 TCCCAACTGATCTCATTCGCGAGATCTTCGCGAGATTGCCTTCGAAGTCAGTGGCTAGG- 440
Query 70 TTTCGTACACTGTCGAAGCACTGGGCGTCTACGCTTCGCAGTCCAGGTTTCACCGAGCTC 129
|||||||||||||| ||||| |||||||||| ||||||||| | | ||||||| ||||
Sbjct 441 TTTCGTACACTGTCCAAGCAGTGGGCGTCTATACTTCGCAGTACTGATTTCACCAAGCTG 500
Query 130 TTCCAGACCAGATCCTCGAATCGTCCGCGTCTCTTGTTGGC-G--G-CCGA-ACGAAATG 184
|||| || |||||||||||||||||| ||||||||||| || | | ||| || |||||
Sbjct 501 TTCCTGAGCAGATCCTCGAATCGTCCACGTCTCTTGTTTGCTGTTGAACGATAC-AAATG 559
Query 185 --GTGAGTGGCTCTTCTTCTCGTCGCCTCAGCCACAGAATCGATATGAGAAGTC-GTCTC 241
|||||||| || ||||| ||||||||| |||||||||| |||||||| || | |||
Sbjct 560 TAATGAGTGGCAATTTTTCTCATCGCCTCAGTCACAGAATCGGTATGAGAAATCAG-CTC 618
Query 242 ATTTGGA-TTATCATACCAAGTTCTCAGGAGACGTTAGCCGA-TACATTTGTAGCTATGC 299
|||| || || ||||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 619 ATTTAGAGTT-TCATAGCAAGTTCTCAGGAGATGTTAGCC-ACTACATTTGTAGCTATGC 676
Query 300 TTCAGGTTTGCTCTATTTTCCTGATTTGTGGC-TCTC-AAAAGA-TGCGTCGCCTGTGAT 356
|||||||||||||||||||||| ||| || | || | | || | || ||||||
Sbjct 677 CTCAGGTTTGCTCTATTTTCCTG--CTGT-GCATATCGTTGATACTGAGACGATTGTGAT 733
Query 357 TTGTAACCCTATCACCGGAATGTATGA-GAGCTTACCTG--ATCTGATGA-GGTACAGAA 412
||||||||||||||||||||||||| | | ||||||||| ||| |||| || ||||||
Sbjct 734 TTGTAACCCTATCACCGGAATGTAT-ACGGGCTTACCTGTGATC--ATGAAGG-ACAGAA 789
Query 413 ATTCTCGAGGCTTTTTAGGGTTTGATTCCATTGATAAGCAATTCAAGG 460
|||||||||||||||| ||||||| || ||||||||| ||||||||
Sbjct 790 GGTCTCGAGGCTTTTTAGTGTTTGATCCCGTTGATAAGCGATTCAAGG 837
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 71.3 bits (38), Expect = 2e-11
Identities = 40/41 (98%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 582 GAGTGAAGGGATATGCATCAATGGAGTTTTCTATTACTTAG 622
|||||||||||||||||||||||||||||| ||||||||||
Sbjct 772 GAGTGAAGGGATATGCATCAATGGAGTTTTGTATTACTTAG 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5