BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486209
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57600.1 | Symbols: | Integrase-type DNA-binding superfamil... 1541 0.0
AT4G39780.1 | Symbols: | Integrase-type DNA-binding superfamil... 110 4e-23
> AT3G57600.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr3:21332783-21333863 FORWARD LENGTH=1081
Length=1081
Score = 1541 bits (834), Expect = 0.0
Identities = 965/1028 (94%), Gaps = 10/1028 (1%)
Strand=Plus/Plus
Query 1 TATCCtcttcttccttcttcactctcaatcttcttcttcACTGCAAAACAAATGGAGAAA 60
||||||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||
Sbjct 8 TATCCTCTTCTTCCTTCTTCACTATCAATCTTCTTCTCCACTACAACACAAATGGAGAAA 67
Query 61 TCATCCTCAATGAAACAATGGAAGAAGGGTCCTGCTCGGGGTAAAGGCGGTCCACAGAAC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 68 TCATCCTCAATGAAACAATGGAAGAAGGGTCCTGCTCGGGGTAAAGGCGGTCCACAAAAC 127
Query 121 GCTCTTTGTCAGTACCGTGGAGTCAGGCAAAGGACGTGGGGCAAATGGGTAGCTGAGATC 180
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 128 GCTCTTTGTCAGTACCGTGGAGTCAGGCAAAGGACTTGGGGCAAATGGGTGGCTGAGATC 187
Query 181 AGGGAGCCCAAGAAGAGGGCAAGACTTTGGCTTGGATCTTTCGCTACAGCTGAAGAAGCA 240
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 188 AGAGAGCCCAAGAAGAGGGCAAGACTTTGGCTTGGCTCTTTCGCTACAGCTGAAGAAGCA 247
Query 241 GCCATGGCTTATGATGAAGCTGCCCTGAAACTCTATGGGCACGATGCATACCTCAACTTA 300
|| |||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct 248 GCTATGGCTTATGATGAGGCTGCCTTGAAACTCTATGGGCACGACGCATACCTCAACTTA 307
Query 301 CCTCATCTTCAGCGGAATACGAGACCTTCTCTGACTAACTCTCAGAGGTTCAAATGGGTA 360
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 308 CCTCATCTTCAGCGGAATACAAGACCTTCTCTGAGTAACTCTCAGAGGTTCAAATGGGTA 367
Query 361 CCTTCAAGGAAGTTTATATCTATGTTTCCTTCTTGTGGTATGCTAAACGTGAATGCTCAG 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 368 CCTTCAAGGAAGTTTATATCTATGTTTCCTTCATGTGGTATGCTAAACGTGAATGCTCAG 427
Query 421 CCTAGTGTTCACGTTATCCAGCAAAGACTAGAGGAACTTAAGAAAACTGGACTTTTATCT 480
|||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 428 CCTAGTGTTCACATAATCCAGCAAAGACTAGAAGAACTCAAGAAAACTGGACTTTTATCT 487
Query 481 CAATCCTATTCTTCTAGTTCTTCCTCCACCGAATCAAAGACTAATACTAGCTTTCTTGAT 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 488 CAATCCTATTCTTCTAGTTCTTCCTCCACCGAATCAAAAACTAATACTAGCTTTCTTGAT 547
Query 541 GAAAAGACCAGCAAGGGAGAAACAGATAATATGTTCGAAGTTGCTGATCAGAAGAAACCA 600
|| ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 548 GAGAAGACCAGCAAGGGAGAAACAGACAATATGTTCGAAGGTGGTGATCAGAAGAAACCA 607
Query 601 GAGATCGACCTAACCGAGTTTCTTCAGCAGCTAGGAATCTTGAAGGATGAAAATCAAGCA 660
||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 608 GAGATCGACCTGACCGAGTTTCTTCAGCAACTAGGAATCTTGAAGGATGAAAATGAAGCA 667
Query 661 GAACCAAGTGAGGTAGCAGAGTGTCATTCCCCTCCACCGTGGAACGAGCAAGAAGAAACT 720
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 668 GAACCAAGTGAGGTAGCAGAGTGTCATTCCCCTCCACCATGGAACGAGCAAGAAGAAACT 727
Query 721 GGAAGTCCTTTCAGAGCTCAGAATTTCAGCTGGGATACGCTGATCGAGATGCCAGGAACT 780
||||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||| |
Sbjct 728 GGAAGTCCTTTCAGAACTGAGAATTTCAGCTGGGATACCCTGATCGAGATGCCAAGAAGT 787
Query 781 GAAACTACAACTATGCAATTCGACTCCAGCAATTTCGGAAGCTATGATTTTGAGGATAAT 840
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 788 GAAACCACAACTATGCAATTTGACTCCAGCAACTTCGGAAGCTATGATTTTGAGGATGAT 847
Query 841 GTATCTTTCCCTTCCATCTGGGACTACTGCGGAAGCTTAGATTGAGTACAAGCAATTCAT 900
||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |
Sbjct 848 GTATCCTTCCCTTCCATCTGGGACTACTACGGAAGCTTAGATTGAGTAAAAGCAATTTAA 907
Query 901 GGTAGATCA-GATTCAGAAGTACACAAATGGTTTGGG-TTTAGTGTAGTGTTCTGGAATA 958
||||||||| |||||||||||||||||||||||| || |||||||||| ||| ||||| |
Sbjct 908 GGTAGATCAAGATTCAGAAGTACACAAATGGTTTTGGATTTAGTGTAGCGTTTTGGAAAA 967
Query 959 GGGAAATAGGTAGTAAGAGACTAAGAGTGCAGTCTATTATTATGCAGCAATAAAACGAGT 1018
| || ||||||||| |||| | |||||||| |||||||||||||||||| ||||
Sbjct 968 GAGACATAGGTAGT--GAGA----G--TGCAGTCTTTTATTATGCAGCAATAAAGTGAGT 1019
Query 1019 CATTGTAC 1026
|| |||||
Sbjct 1020 CAGTGTAC 1027
> AT4G39780.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr4:18457957-18459180 REVERSE LENGTH=1224
Length=1224
Score = 110 bits (59), Expect = 4e-23
Identities = 100/119 (84%), Gaps = 6/119 (5%)
Strand=Plus/Plus
Query 139 GGAGTCAGGCAAAGG-ACGTGGGGCAAATGGGTAGCTGAGATCAG-GGAGCCCAAGAAGA 196
||||| || |||||| || ||||| |||||||||||||||||| | | ||||||||
Sbjct 429 GGAGTTAGACAAAGGCAC-TGGGGAAAATGGGTAGCTGAGATCCGTTTA-CCCAAGAACC 486
Query 197 GGGCAAGACTTTGGCTTGGATCTTTCG-CTACAGCTGAAGAAGCAGCCATGGCTTATGA 254
|| | |||| ||||||||| |||||| | |||||||||||||||||||||||||||||
Sbjct 487 GGACCCGACTCTGGCTTGGAACTTTCGAC-ACAGCTGAAGAAGCAGCCATGGCTTATGA 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5