BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486210
Length=1801
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57610.1 | Symbols: ADSS | adenylosuccinate synthase | chr3:... 2732 0.0
> AT3G57610.1 | Symbols: ADSS | adenylosuccinate synthase | chr3:21334284-21336674
REVERSE LENGTH=1779
Length=1779
Score = 2732 bits (1479), Expect = 0.0
Identities = 1700/1803 (94%), Gaps = 29/1803 (2%)
Strand=Plus/Plus
Query 1 AGGTTTCCCCATACTCAAGTGCCGGCGAACCCTAAGAC-TTTGATACctcttctcttctc 59
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 1 AGGTTTCCCCATACTCAAGTGCCGGCGAACCCTAAGACTTTTGATACCTCTTCTC-T-TC 58
Query 60 tctctcttcaaagatgtctctctcttccctctctctcGACTCCAATCCAAGATTCGCTGC 119
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 59 TCTCTCTTCGAAGATGTCTCTCTCTTCCCTCACTCTCGACTCCAATCCAAGATTCGCTGT 118
Query 120 TGGTGGTCCTTATCACCGCCGTTATCCTCCGCTTCGCCACCCTCGAAGCTTCGTCTCTTG 179
|||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 119 TGGTGGACCTTATCACCGCCGTTATCCTCCTCTTCACCACCCTCGAAGCTTCGTCTCTTG 178
Query 180 CTCTGCTAAACGTCCAGCTGTCTCGGCTTCACTGAGCCTTGCCGCTGATTCAGCCGCCAC 239
|||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 179 CTCTGCTAAACGTCCAGCTGTCTCCGCTTCACTGAGCGTCGCCGCTGATTCAGCCGCCAC 238
Query 240 AGAGTCTCTCGGACGGATTGGATCACTGAGTCAAGTATCGGGTGTACTCGGTTGCCAGTG 299
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 239 TGAGTCTCTTGGACGGATTGGATCACTGAGTCAAGTATCTGGTGTACTCGGTTGCCAATG 298
Query 300 GGGAGATGAGGGTAAAGGCAAACTCGTTGACATCTTAGCCCAACACTTTGACATCGTTGC 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGGAGATGAAGGTAAAGGCAAACTCGTTGACATCTTAGCCCAACACTTTGACATCGTTGC 358
Query 360 TCGTTGTCAGGGTGGAGCAAATGCTGGACACACTATATACAATTCAGAGGGAAAGAAATT 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TCGTTGTCAGGGTGGAGCTAATGCTGGACACACTATATACAATTCAGAGGGAAAGAAATT 418
Query 420 TGCACTTCACCTTGTGCCTTCAGGTATCCTGAATGAGGATACTACTTGTGTGATTGGAAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 419 TGCACTTCACCTTGTGCCTTCAGGTATCCTGAATGAGGATACTACTTGTGTCATTGGAAA 478
Query 480 CGGAGTTGTGGTGCATTTGCCTGGTCTCTTCAAAGAGATTGATGGTCTCGAGTCCAATGG 539
||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 479 CGGAGTTGTGGTGCATTTGCCAGGTCTCTTCAAAGAGATTGATGGTTTGGAGTCCAATGG 538
Query 540 CGTCTCATGTAAAGGAAGGATCTTGGTCTCTGATCGCGCTCATTTGTTATTCGATTTTCA 599
||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 539 TGTCTCCTGTAAAGGAAGGATTTTGGTCTCTGATCGCGCTCACTTGTTATTCGATTTCCA 598
Query 600 TCAAGAGGTTGATGGGCTCAGGGAATCTGAGCTTGCAAAATCGTTCATTGGCACCACGAA 659
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 599 TCAAGAGGTTGATGGGCTCAGGGAATCTGAGCTTGCCAAGTCGTTCATTGGCACCACCAA 658
Query 660 GAGGGGAATTGGTCCTGCCTATTCTAGTAAAGTGATAAGGAATGGTATTAGAGTGGGTGA 719
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 659 GAGGGGAATTGGTCCTGCCTACTCTAGTAAAGTGATAAGGAATGGTATTAGAGTAGGTGA 718
Query 720 TCTCAGGCACATGGATACTTTACCTCAGAAGCTTGACCTTTTACTATCAGATGCTGCGGC 779
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 719 TCTCAGGCACATGGATACTTTACCTCAAAAGCTTGACCTTTTACTATCAGATGCAGCGGC 778
Query 780 AAGGTTTCAAGGGTTCAAATATACTCCAGACATGCTTCGGGAAGAAGTCGAAGCATACAA 839
|||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||
Sbjct 779 AAGGTTTCAAGGGTTCAAGTATACTCCTGAAATGCTTCGGGAAGAAGTTGAAGCATACAA 838
Query 840 GAGATATGCTGACAGATTGGAGCCCTACATTACTGACACTGTCCATTTCATGAATGACTC 899
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 839 GAGATACGCTGACAGATTGGAGCCCTACATTACTGACACTGTCCATTTCATCAATGACTC 898
Query 900 GATTTCTCAGAAGAAAAAGATTTTGGTCGAAGGTGGCCAAGCTACAATGTTGGACATTGA 959
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 899 GATTTCGCAGAAGAAAAAGGTTTTGGTCGAAGGTGGTCAAGCTACAATGTTGGACATTGA 958
Query 960 CTTTGGGACTTATCCTTTTGTTACTTCCTCCAGCCCCTCAGCCGGTGGGATCTGCACGGG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 959 CTTTGGGACTTATCCTTTTGTTACTTCCTCCAGCCCCTCAGCCGGTGGGATCTGCACAGG 1018
Query 1020 TCTTGGTATTGCACCAAGAGTTGTTGGTGATCTAATTGGAGTGGTAAAAGCATACACTAC 1079
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCTTGGTATTGCACCAAGTGTTGTTGGTGATCTAATTGGAGTGGTAAAAGCATACACTAC 1078
Query 1080 AAGAGTTGGTTCAGGCCCATTCCCAACAGAAAATTTGGGCCCAGATGGTGACCTTCTTAG 1139
||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 1079 AAGAGTTGGTTCAGGTCCATTCCCGACAGAAAATTTGGGCACAGGTGGTGACCTTCTTAG 1138
Query 1140 GTTGGCTGGACAGGAGTTTGGCACTACAACTGGGCGTCCTCGTCGGTGTGGTTGGCTTGA 1199
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1139 GTTAGCTGGACAGGAGTTTGGCACTACAACTGGTCGTCCTCGTCGGTGTGGCTGGCTTGA 1198
Query 1200 CATTGTTGCACTGAAATTTTCTTGCCAAATCAATGGATTTGCATCACTGAATCTCACTAA 1259
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1199 CATTGTTGCCCTGAAATTTTCTTGCCAAATCAATGGATTTGCATCACTTAATCTCACTAA 1258
Query 1260 GCTTGATGTACTTTCGGATCTGAACGAAATCCAGCTGGGTGTGGCTTATAAGAGGAGTGA 1319
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1259 GCTTGATGTACTTTCGGATCTGAACGAAATCCAGCTGGGTGTGGCTTACAAGAGGAGTGA 1318
Query 1320 TGGCACTCCTGTTGAATCATTCCCTGGTGATCTTCGTCTTCTCGAAGAACTGCAAGTGGA 1379
||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1319 CGGCACCCCTGTTAAATCATTCCCTGGTGATCTTCGTCTTCTCGAAGAACTGCATGTGGA 1378
Query 1380 GTATGAAGTCTTACC-GGGATGGAAGTCTGACATTTCCTCGGTCAGAAATTACTCTGATC 1438
||||||||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 1379 GTATGAAGTCTTACCTGGG-TGGAAGTCTGACATATCCTCGGTCAGAAACTACTCTGATC 1437
Query 1439 TTCCAAAGGCTGCACAGCAGTATGTGGAGAGGATTGAAGAACTTGTGGGTGTGCCCATTC 1498
||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1438 TTCCAAAGGCTGCTCAGCAATATGTTGAGAGGATTGAAGAACTCGTGGGTGTGCCCATTC 1497
Query 1499 ATTACATTGGTATTGGGCCCGGTCGTGATGCCCTTATATACAAATGATTTTTAGTGTTAG 1558
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1498 ATTACATTGGTATTGGGCCCGGTCGTGATGCCCTTATATATAAATGATTTTTAGTGTTAG 1557
Query 1559 ttttttttttcttttttttttGCTCTCCTCCACAAGCTCAAAAATTGATCAAGTGTCAAG 1618
||||||| | | |||||||||| ||||||||||||||||||||||||
Sbjct 1558 G---------CTTTTTTG---G-T-TCCTCCACAAACTCAAAAATTGATCAAGTGTCAAG 1603
Query 1619 TTACTGAGAATTGTTACTCTCTTTGGAATGACTAGTGTATCTGTTGCATTGTTTCTTATA 1678
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1604 TTACTGAGAATTATTACTCTCTTTGGAATGACTAGTGTATCTGTTGCATTGTTTCTAATA 1663
Query 1679 TTGGAATGAAGAGGAATTCTGTGCTTAGGCAGTGAGGTTGTTATGTTCATAAAGTTTAGG 1738
||||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||| |
Sbjct 1664 TTGGAATGAAGAGGAATTCTGTGCTTAAGCAGTGAGGTTGCTATATTCATAATGTTTAAG 1723
Query 1739 CTTTCGTGTTTGATCTTTACTCTATTCCTTGAATTCTTTCCATTGATAAGAGATCCTTGT 1798
||||||||||||||||| ||||||||| | ||| | ||||||||||||||||| |
Sbjct 1724 CTTTCGTGTTTGATCTT-ACTCTATTC---G--TTC---C-ATTGATAAGAGATCCTTTT 1773
Query 1799 ATG 1801
|||
Sbjct 1774 ATG 1776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89105967375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5