BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486213
Length=2841
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57630.1 | Symbols: | exostosin family protein | chr3:21339... 4176 0.0
> AT3G57630.1 | Symbols: | exostosin family protein | chr3:21339302-21343796
REVERSE LENGTH=2913
Length=2913
Score = 4176 bits (2261), Expect = 0.0
Identities = 2706/2908 (93%), Gaps = 81/2908 (3%)
Strand=Plus/Plus
Query 1 GACGACCATTTCCATAATCAATCAACAATTGCTTTCCTTCCCGGCCAGCCAGAGATCTCC 60
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 20 GACGACCACTTCCATAATCAATCAACAATTGCTTTCCTTCCCGGCCAGCCACAGATCTCC 79
Query 61 GTGGCC-T-tctctc--tc-------t-c------tc--ta--attattattat-agt-t 96
|||||| | |||||| || | | | || ||||||||| | | | |
Sbjct 80 GTGGCCATCTCTCTCTTTCTAATTATTACAAAGAAGCATTATTATTATTATTTTAATTAT 139
Query 97 ataattattatataatc--a-c-ctctgtgtaagtaataattatcttataaATCCTCCCC 152
||||||||| ||||||| | | |||| ||||||||||||||||| ||||||||||||||
Sbjct 140 ATAATTATTGTATAATCAAATCTCTCTCTGTAAGTAATAATTATCGTATAAATCCTCCCC 199
Query 153 ATTGTT--G------A-----TGTAAACCCATGCCGTTTTCCGTCAAAGCTGGCGGTCAA 199
|||||| | | |||||||||||| ||||||||||||||||||||||||||
Sbjct 200 ATTGTTGAGTTAATTAGTTCTTGTAAACCCATGACGTTTTCCGTCAAAGCTGGCGGTCAA 259
Query 200 GTTTGAAAACTCAA-AGCTTTTGGA-TTCAATCATGTTTTCTCACCAGAAATGGAAGTTC 257
|||||||||| || | | || ||| ||| ||||||||||||||||||||||||||||||
Sbjct 260 CTTTGAAAACT-AACAAC-TTCGGATTTCCATCATGTTTTCTCACCAGAAATGGAAGTTC 317
Query 258 TCATGGTCTCAGATAGCCACTGTTGCTTCTGTCATTGTTTTGGTTTCAC-TGGTTCATCT 316
||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||
Sbjct 318 TCATGGTCTCAGATAGCCACTGTTGCTTCTGTCATTGTTCTCGTTTC-CTTGGTTCATCT 376
Query 317 GTTTCTTGGTCCTGTAGTGCCTTCTTTTGATTCTATTACTGTAAGGCAAGCTCAGAATCT 376
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 377 GTTTCTTGGTCCTGTAGTGCCTTCTTTTGATTCTATTACTGTAAGACAAGCTCAGAATCT 436
Query 377 TTCTGGACCAACTAATGAATCAATCACACAAGTCACTAAGGACTT-AAGTCACTCAC--- 432
|| |||||||| ||||||||||||| ||||||| ||||| || || |||||| || |
Sbjct 437 TTGTGGACCAAGTAATGAATCAATCTCACAAGTGACTAA-GAATTCAAGTCAATCCCTTG 495
Query 433 TTGTTGTTGCCTTTGATCGCCGGTTTCCTGCTGACTCTCACGGCGCTGTAGTTTATCGAA 492
|||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||| |
Sbjct 496 TTGTTGTTGCCTTTGATCGCCGCTTTCCTGCTGACTCACACGGTGCAGTAGTTTATCGTA 555
Query 493 ATGCCTCATGGAAAGCCGAGATCGGACAATGGCTTTCTAGTTGTGATGCAGTTGCCAAAG 552
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 556 ATGCCTCGTGGAAAGCTGAGATCGGACAATGGCTTTCTAGTTGTGATGCAGTTGCTAAAG 615
Query 553 AAGTTGACGTTATTGAACCAATTGGTGGGAAAAAGTGTATGAATGATTGTAGTGGTCAAG 612
|||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 616 AAGTTGACATTATTGAACCAATTGGTGGGAGAAAGTGTATGAGTGATTGTAGTGGTCAAG 675
Query 613 GTGTTTGTAACCATGAATTTGGATTATGTCGTTGCTTCCATGGATTTACAGGAGATGATT 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 676 GTGTTTGTAACCATGAATTTGGATTATGTCGTTGCTTCCATGGATTTACAGGAGAAGATT 735
Query 673 GTTCGCAAAAGCTTCATTTAGATTGCAATTATGAGAAAACACCTGAGATGCCATATGGGA 732
|||| |||||||||| ||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 736 GTTCACAAAAGCTTCGTTTAGATTGCAATTATGAGAAAACACCAGAGATGCCATACGGAA 795
Query 733 AATGGGTTGTTTCGATTTGTTCCAGACATTGTGACACCACAAGAGCAATGTGCTTTTGTG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 AATGGGTTGTTTCGATTTGTTCCAGACATTGTGACACCACAAGAGCAATGTGCTTTTGTG 855
Query 793 GAGAAGGCACAAAATATCCAAATCGTCCAGTGCCAGAGTCATGTGGATTTCAAATCAATT 852
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 856 GAGAAGGCACAAAATATCCAAACCGTCCAGTGCCAGAGTCATGTGGATTTCAAATCAATT 915
Query 853 CGCCGGCGAATCCTGATGAACCTAAAATGACAGATTGGTCAAAACCAGACTTAGATATTC 912
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 916 CGCCGACGAATCCTGATGAACCTAAAATGACAGATTGGTCGAAACCAGACTTAGATATTC 975
Query 913 TAACAACAAACAGTAGCAAACAAGGATGGTGCAATGTGGATCCAGAAGATGCATATGCT- 971
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 TAACAACAAACAGTAGCAAACAAGGATGGTGCAATGTGGATCCAGAAGATGCATATGCTA 1035
Query 972 TCAAAGGTGCAAATCAAAGAGGAATGTGACTGTAAATATGACTGTCTTTGGGGACGGTTC 1031
| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1036 T-GAAGGTGAAAATCAAAGAGGAATGTGACTGTAAATATGATTGTCTTTGGGGACGGTTC 1094
Query 1032 TGCGAAATTCCAGTACAATGCACCTGCGTTAATCAGTGCTCTGGGCATGGCAAATGCAGA 1091
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1095 TGCGAAATTCCAGTACAATGCACCTGCGTTAATCAGTGCTCTGGACATGGCAAATGCAGA 1154
Query 1092 GGAGGTTTCTGCCAGTGTGATAAAGGCTGGTTTGGAACAGATTGTAGTATTCCATCCACT 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 GGAGGTTTCTGCCAGTGTGATAAAGGCTGGTTTGGAACAGATTGTAGTATTCCATCCACT 1214
Query 1152 CTCTCGACGGTAGGAGAGTGGCCACAGTGGCTTCGACCAGCACATCTTGAAGTTCCAAGT 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 CTCTCGACGGTAGGAGAGTGGCCACAGTGGCTTCGACCAGCACATCTTGAAGTTCCAAGT 1274
Query 1212 GaaaaaaaTGTCCCTGGTAATCTCATTAATCTGAGTGCTGTGGTGAAGaaaaaaaGGCCT 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GAAAAAAATGTCCCTGGTAATCTCATTAATCTGAGTGCTGTGGTGAAGAAAAAAAGGCCT 1334
Query 1272 CTTATATACATCTATGATCTACCCCCAGACTTCAACAGTTTACTTCTTGAGGGCCGGCAT 1331
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1335 CTTATATACATCTATGATCTACCCCCAGACTTCAACAGTCTACTTATTGAGGGCCGGCAT 1394
Query 1332 TATAAACTTGAGTGTGTTAATAGGATCTATGATGAGAGGAATGCAACAGTATGGACAGAT 1391
| |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 TTTAAATTTGAATGCGTTAATAGGATCTATGATGAGAGGAATGCAACAGTATGGACAGAT 1454
Query 1392 TATCTATATGGTTCCCAGATGGCATTCTATGAGAACATTTTGGCCACCGCTCATCGTACA 1451
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1455 TATCTATATGGTTCCCAGATGGCATTCTACGAGAACATCTTGGCCACCGCTCATCGTACA 1514
Query 1452 CTGAATGGAGAAGAGGCAGATTTCTTCTTTGTTCCTGTTCTGGATTCATGCATTATAAAT 1511
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 ATGAATGGAGAAGAGGCAGATTTCTTCTTTGTTCCTGTTCTGGATTCATGCATTATAAAT 1574
Query 1512 CGTGCTGATGATGCACCTCACATTAACATGCAGAATCATACCAGATTAAGAAGCTCATTT 1571
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1575 CGTGCTGATGATGCACCTCACATTAACATGCAGAATCATACTGGATTAAGAAGCTCACTT 1634
Query 1572 ACCTTAGAGTTCTACAAAAGGGCTTATGAACACATCATTGAGAAATATCCATACTGGAAC 1631
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1635 ACCTTAGAGTTCTACAAAAGGGCTTATGAACACATTGTTGAGAAATATCCATACTGGAAC 1694
Query 1632 CGGTCAGCTGGGAGAGACCATATTTGGTTTTTCTCATGGGATGAAGGTGCTTGCTATGCT 1691
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 CGCTCAGCTGGAAGAGACCATATTTGGTTTTTCTCATGGGATGAAGGTGCTTGCTATGCT 1754
Query 1692 CCTAAAGAGATATGGAATAGCATGATGCTAGTTCACTGGGGTAACACGAACTCTAAGCAC 1751
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1755 CCTAAAGAGATATGGAATAGCATGATGCTAGTTCACTGGGGTAACACAAACTCTAAGCAC 1814
Query 1752 AACCATTCAACAACAGCTTATTGGGGTGATAACTGGGATGATATATCTGATGAGAGGAGA 1811
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1815 AACCATTCAACAACAGCTTATTTTGGTGATAACTGGGATGATATATCTGATGAGAGGAGA 1874
Query 1812 GGAGATCATCCTTGCTTTGACCCCCGCAAAGATCTCGTGATTCCAGCCTGGAAAGTTCCT 1871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1875 GGAGATCATCCTTGCTTTGACCCCCGCAAAGATCTCGTGATTCCAGCCTGGAAAGTTCCT 1934
Query 1872 GACCCTTACTCAATGCGTGCAAATTACTGGGCAAGGCCACGGGAGAAGCGGAAAACATTG 1931
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1935 GACCCTTACTCAATGCGCAAAAATTACTGGGAAAGGCCACGGGAGAAGCGGAAAACATTG 1994
Query 1932 TTTTACTTTAATGGGAATCTCGGACCTGCTTATGAAAAGGGAAGGCCTGAAGATTCGTAT 1991
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995 TTTTACTTCAATGGGAATCTCGGACCTGCTTATGAAAAGGGAAGGCCTGAAGATTCGTAT 2054
Query 1992 AGTATGGGAATCAGGCAGAAGCTAGCAGAAGAGTTTGGTTCTAGCCCTAACAAAGAAGGT 2051
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2055 AGCATGGGAATCAGGCAGAAGCTAGCAGAAGAGTTTGGTTCTAGCCCTAACAAAGAAGGT 2114
Query 2052 AAGCTTGGGAAGCAACACGCAGAAGATGTGATTGTAACTCCATTGCGCTCTGACAATTAC 2111
|||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2115 AAGCTTGGGAAGCAGCACGCAGAAGATGTGATTGTAACTCCATTGCGTTCCGACAATTAC 2174
Query 2112 CACAAGGACATAGCCAATTCAATCTTCTGTGGTGCGTTCCCTGGAGATGGTTGGAGTGGA 2171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2175 CACAAGGACATAGCCAATTCAATCTTCTGTGGTGCGTTCCCTGGAGATGGTTGGAGTGGA 2234
Query 2172 CGCATGGAAGATAGTATCTTACAAGGATGTGTCCCAGTTATCATTCAGGATGGAATCTAC 2231
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 2235 CGCATGGAAGATAGTATCTTACAAGGATGTGTTCCAGTCATCATTCAGGACGGAATCTAC 2294
Query 2232 TTGCCTTATGAAAACATGCTCAATTACGAAAGCTTTGCAGTTCGTGTCAGCGAAGATGAC 2291
||||| ||||| |||||||||||||| ||||| |||||||||||||||| |||||||||
Sbjct 2295 TTGCCATATGAGAACATGCTCAATTATGAAAGTTTTGCAGTTCGTGTCAATGAAGATGAC 2354
Query 2292 ATTCCAAATCTCATAAACACACTCCGGGGATTCAGTGAGACAGAGATACAATTCAGACTC 2351
||||| |||||||||||||| || || |||||||||||| |||||||||||||||||||
Sbjct 2355 ATTCCCAATCTCATAAACACTCTGCGAGGATTCAGTGAGGCAGAGATACAATTCAGACTG 2414
Query 2352 GCTAATGTAAAGAAACTTTGGCAAAGATTTTTGTTCCGAGACTCTATTTTGCTTGAAGCA 2411
| |||||||||| | || ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 2415 GGTAATGTAAAGGAGCTCTGGCAAAGATTCTTGTTCCGAGACTCGATTTTGCTTGAAGCA 2474
Query 2412 GAGAGACAAAAGGCTAGTTATGGACATGAAGAAGACTGGGCTGTTCAATTCTCTAAACTG 2471
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2475 GAGAGACAAAAAGCTACTTATGGACATGAAGAAGACTGGGCTGTTCAATTCTCTAAACTG 2534
Query 2472 AAGCATGACGACATCTTTGCTACTTTCATACAAACTCTGCATTTCAAGCTACACAACGAT 2531
||||| || || ||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 2535 AAGCACGATGATATCTTCGCTACTATCATACAAACTCTGCATTTCAAGCTACACAACGAT 2594
Query 2532 CCATGGAGACGAGAGCAAGTCATAAACCGGGCTAAAGATTACGGATTGCCTCAAGAATGT 2591
||||||||||||||||||| | |||||||| |||||||||| || ||||| |||||||||
Sbjct 2595 CCATGGAGACGAGAGCAAGCCGTAAACCGGACTAAAGATTATGGTTTGCCGCAAGAATGT 2654
Query 2592 CTCCATAAAACCAACTGATCAAAAATCT----CAA----GTTGGAA----G----TAAAT 2635
||||||||||||| |||||||||| ||| ||| ||||||| | |||||
Sbjct 2655 CTCCATAAAACCAGCTGATCAAAA-TCTAAAACAAAAAAGTTGGAACTTTGGAAGTAAAT 2713
Query 2636 ACCTCAGAAGCTGCAGAAGCATATACATATACAAATGGCAGAATCATTCAAGATTCATTG 2695
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 2714 ACCTCAGAAGCTGCAGAAGCATATACATATACACACGGCAGAATCATTCAAGATTCATTG 2773
Query 2696 CCAGATCGATTCTTTTTGAAAAGGAATAATCTTGGGTTTTGAATTAGGT-ACACCATCAG 2754
||| ||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||
Sbjct 2774 CCAAATCGATTCTTTTTGAAA-GGAATAATCTTGGGTTTTGAGTTAGGTGA-ACCATCAG 2831
Query 2755 TCGTTATGTAAGCAAAACGT-TGTTTGTTAAATTCAAACCACtttttttAATTTAAATTA 2813
|| ||||||||||||||| | | |||||||||||||| ||| ||||| ||| | ||
Sbjct 2832 TCATTATGTAAGCAAAAC-TCTATTTGTTAAATTCAAGCCAGTTTTTATAA---AGAT-- 2885
Query 2814 CGTAAGTAAACAATTTATTCAGCATATT 2841
||||||| ||||||||||||||||||||
Sbjct 2886 CGTAAGTTAACAATTTATTCAGCATATT 2913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141169777602
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5