BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486214
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57640.1 | Symbols: | Protein kinase superfamily protein | ... 558 3e-158
> AT3G57640.1 | Symbols: | Protein kinase superfamily protein
| chr3:21344800-21346057 REVERSE LENGTH=1258
Length=1258
Score = 558 bits (302), Expect = 3e-158
Identities = 333/348 (96%), Gaps = 2/348 (1%)
Strand=Plus/Plus
Query 281 ATTGGTTGGATGTTGTCTTGAATCTGAACATCCAGTTTTGGTTTATCGTGCATTAAAGAA 340
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 444 ATTGGTTGGATGTTGTCTTGAATCTGAACATCCAGTTTTGGTTTATCGTGCATCAAAGAA 503
Query 341 ACCTTCTAGTTTAGATCTGAAAACGGTTGTGTCATGGAGACAAAGATTGAAGATAGCAGA 400
|||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 504 ACCTACTAGTTTAGATCTGAAAATGGTTGTGTCATGGAGACAAAGATTGAAAATAGCAGA 563
Query 401 GGAGATTGCTACTGCTTTAGCTTATCTTCACACTGCCTTCCCAAGGCCTTTCGTATATAG 460
||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 564 GGAGATTGCAACTGCTTTAGCTTATCTTCACACTGCGTTTCCAAGACCTTTCGTATATAG 623
Query 461 GATTCTGCGTTTAGAAGATATCTTATTGGATGATGAAGATGGTGTTGCTAAGTTGTGTAA 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 GATTCTGCGTTTAGAAGATATCTTATTGGATGATGAAGATGGTGTTGCTAAGTTGTGTAA 683
Query 521 CTTCTC-TCACTGTGCCTCGATTCCACAAGGAGAAACATTTGTGAAACTTGGTAGTGGTT 579
|||||| | |||||| ||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct 684 CTTCTCCT-ACTGTGTCTCTATTCCACAAGGAGAAACATTTGTGAAGCTTGGTAATGGTT 742
Query 580 GTATAGGTGGAGATTATGATTACATGGATGATAATTATTTGATCAATG 627
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 743 GTATAGGTGGAGATTATGATTACATGGATGATAATTATTTGATTAATG 790
Score = 377 bits (204), Expect = 9e-104
Identities = 239/256 (93%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 645 TTTGAAAACAGAAGAAAGTTTGCAAAATCCATTGATGAGATTGTTGATTCAAAGAT-TCT 703
|||||||||||||||||||||||||||| ||||||||||||||| |||||||| || | |
Sbjct 904 TTTGAAAACAGAAGAAAGTTTGCAAAATGCATTGATGAGATTGTCGATTCAAACATGT-T 962
Query 704 AGAGAAAATAGGTGAAGTTACAGAAGAAGAGCGTTGTCGAATGGAAGCTTTCATTGTTCT 763
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 963 AGAGAAAATAGGTGATGTTACAGAAGAAGAGCGTTGTCGAATGGAAGCTTTCATTGTCCT 1022
Query 764 CTTAGAAAGATGCATTGGTCTTAGAGGGGAAGTTCCAAAAATGGTGGAAGTTGCCAAAGA 823
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1023 CTCGGAAAGATGCATTGGTCTTAGAGGGGAAGTTCCAAAAATGGTTGAAGTTGCCAAAGA 1082
Query 824 ACTAAAAAGATTTCTTAGAGATTCTTCTTCTTCTTCCGATGAAACAAGTTTGTAGATTAT 883
|||||||||||| |||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 1083 ACTAAAAAGATTCCTTAGAGATTCTTCTTCTTCTTGTGGTGAAACAAGTTTATAGATTAC 1142
Query 884 AAATCACATACTTGTT 899
| ||||||||||||||
Sbjct 1143 ATATCACATACTTGTT 1158
Score = 335 bits (181), Expect = 5e-91
Identities = 203/213 (95%), Gaps = 3/213 (1%)
Strand=Plus/Plus
Query 72 AAGAGATCATCAAATCTTGCAATGGCGAAGCAAATCCCATCAAATTCTTCTCCGCTGATC 131
|||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||
Sbjct 155 AAGAGATCATCAAATCTTGCAATGGCAAAGCAAATCCCATCAAAATATTCTCCGCTGATC 214
Query 132 AAATCCTCGAAGCCACAGACACTTTCAGCGAATCCAATCTTGTTTCTGAACTATTCGATG 191
||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 215 AAATCCTAGAAGCCACCGACACTTTCAGCGAATCCAATCGTGTTTCTGAACTATTCGATG 274
Query 192 AGATTCCATACGATTGGTATTATTCAGGTAAAAACAATAACCATCATCATCAT-A-ACA- 248
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 275 AGATTCCATACGATTGGTATTATTCAGGTAAAAACAATAACCATCATCATCATCATAAAC 334
Query 249 TGTTACTCATCAAGAAATGGAGATATAGATTTA 281
|||||||||||||||||||||||||||||||||
Sbjct 335 TGTTACTCATCAAGAAATGGAGATATAGATTTA 367
Score = 80.5 bits (43), Expect = 3e-14
Identities = 50/53 (94%), Gaps = 1/53 (2%)
Strand=Plus/Plus
Query 1 TTTT-GTTGTTGTTTGAGATGAATTGGTGGAAGAAGAAGAGTTTACGAGCCAT 52
|||| |||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 49 TTTTCGTTGTTGTTTGAGATGGAGTGGTGGAAGAAGAAGAGTTTACGAGCCAT 101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47320566474
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5