BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486217
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57670.1 | Symbols: NTT, WIP2 | C2H2-type zinc finger family... 2337 0.0
AT1G51220.1 | Symbols: WIP5 | WIP domain protein 5 | chr1:18989... 418 8e-116
AT1G08290.1 | Symbols: WIP3 | WIP domain protein 3 | chr1:26099... 178 1e-43
> AT3G57670.1 | Symbols: NTT, WIP2 | C2H2-type zinc finger family
protein | chr3:21370903-21373446 FORWARD LENGTH=1510
Length=1510
Score = 2337 bits (1265), Expect = 0.0
Identities = 1429/1507 (95%), Gaps = 16/1507 (1%)
Strand=Plus/Plus
Query 1 tctctctctctctTCACCATGACTGATCCTTATTCCAATTTCTTCACAGACTGGTTCAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 TCTCTCTCTCTCTTCACCATGACTGATCCTTATTCCAATTTCTTCACAGACTGGTTCAAG 75
Query 61 TCTAATCCTTTTCACCATTAccctaattcctccactaacccctctcctcaccctcttcct 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 76 TCTAATCCTTTTCACCATTACCCTAATTCCTCCACTAACCCCTCTCCTCATCCTCTTCCT 135
Query 121 cttcctcttcctcctccctcttcctttttcttcttccctcAATCCGGCGATCTCCGCCGT 180
| | | || |||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 136 C--C-TGTTACTCCTCCCTCTTCCTTCTTCTTCTTCCCTCAATCCGGAGACCTCCGCCGT 192
Query 181 CCACCGCCGCCACCAActcctcctccttctcctcctctccgcgaagccctccctctcctc 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 193 CCACCGCCGCCACCAACTCCTCCTCCTTCTCCTCCTCTCCGAGAAGCCCTCCCTCTCCTC 252
Query 241 agcctcAGCCCCGCCAACAAACAACAAGACCACCATCACAACCATGACCATCTAATTCAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 253 AGCCTCAGCCCCGCCAACAAACAACAAGACCACCATCACAACCATGACCACCTTATTCAA 312
Query 301 GAACCACCTTCAACCTCCATGGATGTCGACTACGATCATCACCATCAAGATGATCATCAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GAACCACCTTCAACCTCCATGGATGTCGACTACGATCATCACCATCAAGATGATCATCAT 372
Query 361 AACCTCGAGGAAGATGACCATGACGTCACCGTTGCTCTTCACATAGGCCTTCCAAGCCCT 420
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 AACCTCGATGACGATGACCATGACGTCACCGTTGCTCTTCACATAGGCCTTCCAAGCCCT 432
Query 421 AGTGCTCACGAGATGGCCTCTTTGCTCATGATGTCTTCTTCTTCCTCTTCCTCGAGGACC 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 AGTGCTCAAGAGATGGCCTCTTTGCTCATGATGTCTTCTTCTTCCTCTTCCTCGAGGACC 492
Query 481 ACTCATCATCATGAGGATATGAATCACAAGAAAGATCTCGACCATGATTACAGTCACGGC 540
||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 493 ACTCATCATCACGAGGACATGAATCACAAGAAAGACCTCGACCATGAGTACAGCCACGGA 552
Query 541 GCTGCCGGAGGAGGAGAAGACGACGATGAAGATTCAGTCGGTGGAGACGGCGGCTGTAGA 600
|||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 553 GCTGTCGGAGGAGGAGAAGATGACGATGAAGATTCAGTCGGCGGAGACGGCGGCTGTAGA 612
Query 601 ATCAGCAGACTGAACAAGGGCCAATATTGGATCCCTACACCTTCTCAGATTCTCATTGGC 660
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 613 ATCAGCAGACTCAACAAGGGTCAATATTGGATCCCTACACCTTCTCAGATTCTCATTGGC 672
Query 661 CCTACTCAGTTCTCATGTCCTGTTTGCTTCAAAACCTTCAACAGATACAACAACATGCAG 720
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 673 CCTACTCAGTTCTCATGTCCTGTTTGCTTCAAAACCTTCAACAGATACAATAACATGCAG 732
Query 721 ATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCTGAATCTCTAAGGGGAACA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 ATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCTGAATCTCTAAGGGGAACA 792
Query 781 CAGCCAACAGGAATGCTAAGGCTTCCGTGCTACTGCTGCGCACCAGGCTGCCGCAACAAC 840
|| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 793 CAACCAACAGGAATGCTAAGGCTTCCGTGCTATTGCTGCGCCCCAGGCTGTCGCAACAAC 852
Query 841 ATTGACCATCCAAGGGCAAAGCCTCTCAAAGACTTCAGAACACTTCAAACACATTACAAA 900
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 853 ATTGACCATCCAAGGGCAAAGCCTCTCAAAGACTTCAGAACCCTTCAAACACATTACAAG 912
Query 901 AGGAAACATGGGATCAAACCTTTCATGTGTAGGAAATGTGGAAAGGCTTTCGCAGTCCGA 960
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AGAAAACATGGGATCAAACCTTTCATGTGTAGGAAATGTGGAAAGGCTTTCGCAGTCCGA 972
Query 961 GGGGATTGGAGAACACATGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGATCT 1020
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 973 GGGGACTGGAGAACACATGAGAAGAATTGTGGCAAACTTTGGTATTGCATATGTGGATCT 1032
Query 1021 GATTTTAAGCACAAAAGATCTCTCAAAGATCATATCAAGGCTTTTGGAAATGGCCATGGA 1080
||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1033 GATTTCAAGCACAAGAGATCTCTCAAAGATCACATCAAGGCTTTTGGGAATGGTCATGGA 1092
Query 1081 GCGTATGGCATTGATGGGTTTGATGAAGAAGATGAGCCTGCCTCAGAGGTAGAACAGTTA 1140
|| || || ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1093 GCCTACGGAATTGATGGGTTTGATGAAGAAGATGAGCCTGCCTCTGAGGTAGAACAATTA 1152
Query 1141 GACAATGATCATGAGTCAATGCAGTCCAAATAGCTTATATAAATTAGTGTAATTAGTACT 1200
|||||||||||||||||||||||||| |||||||||||||| |||| | ||| |||||
Sbjct 1153 GACAATGATCATGAGTCAATGCAGTCTAAATAGCTTATATATATTACTATAA---GTACT 1209
Query 1201 AAGTAATTCGGTATATATATTAATTATAAGTA-CCTAAATCTATGGACCAAGTTTTGATG 1259
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1210 AAGTAATTCGGTATATATATTAATTATAAGAAACCTAAATCTATGGACCAAGTTTTGATG 1269
Query 1260 GAGGTAGGGCTTTTCAAAGTAAAAGCTATATCATCTAATTGATCATAG-AACAAAATGAA 1318
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 1270 GAGGTAGGGCTTTTCAAACTAAAAGCTATATCATCTAATTGATCATAGGAAAAAAATGAA 1329
Query 1319 TCAAGATCACTTGGAAATTTTTAATTTTGTATCTTTAGCTAGCT--TTAAATTTATTGCA 1376
|||||| |||||||||| |||||| || |||||||||||| || ||||||||||||||
Sbjct 1330 TCAAGAGCACTTGGAAAATTTTAAATT-GTATCTTTAGCTTCCTAGTTAAATTTATTGCA 1388
Query 1377 AGACAATGTAGCACTCTAACTAATGAGGTTTCCAACGGTTTCTTTATATTTGTATATATA 1436
||||||||||||| |||||| ||||||||| |||||||||| ||| ||||||||||| ||
Sbjct 1389 AGACAATGTAGCAGTCTAACCAATGAGGTTCCCAACGGTTTATTTCTATTTGTATAT-TA 1447
Query 1437 TTATTTTTGTCATTAGTTTCACCTTTCGTTAATTCGAAGGACATAACTTATAAATGTTTA 1496
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 TT-TT---GTCATTAGCTTCACCTTTCGTTAATTCGAAGGACATAACTTATAAATGTTTA 1503
Query 1497 AATTATG 1503
|||||||
Sbjct 1504 AATTATG 1510
> AT1G51220.1 | Symbols: WIP5 | WIP domain protein 5 | chr1:18989751-18992149
REVERSE LENGTH=1303
Length=1303
Score = 418 bits (226), Expect = 8e-116
Identities = 387/463 (84%), Gaps = 18/463 (4%)
Strand=Plus/Plus
Query 625 TATTGGATCCCTACACCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCATGTCCTGTT 684
|||||||| ||||| |||||||||||| | ||||| ||||| |||||| | |||||| ||
Sbjct 602 TATTGGATTCCTACTCCTTCTCAGATTTTGATTGGTCCTACACAGTTCACTTGTCCTCTT 661
Query 685 TGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCA 744
|||||||| || ||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 662 TGCTTCAAGACATTCAACAGATACAACAACATGCAGATGCACATGTGGGGACACGGCTCA 721
Query 745 CAATACAGAAAAGGACCTGAATCTCT-AAGGGGAACACAGCCAACAGGAATGCTAAGGCT 803
||||||||||| ||||| ||||| || ||| ||||| || ||||||||||||||||| ||
Sbjct 722 CAATACAGAAAGGGACCAGAATC-CTTAAGAGGAACCCAACCAACAGGAATGCTAAGACT 780
Query 804 TCCGTGCTACTGCTGCGCACCAGGCTGCC-GCAACAACATTGACCATCCAAGGGCAAAGC 862
|| || | |||||| ||||| || ||| | |||||||||||||| ||| | || ||||
Sbjct 781 ACCATGTTTCTGCTGTGCACCCGGTTGCAAG-AACAACATTGACCACCCACGAGCCAAGC 839
Query 863 CTCTCAAAGACTT-CAGAACACTTCAAACACATTACAAAAGGAAACATGGGATC-AAACC 920
|||| || ||||| | |||| || ||||||||||||||| | ||||||||| || |||||
Sbjct 840 CTCTTAAGGACTTTC-GAACCCTCCAAACACATTACAAACGTAAACATGGG-TCTAAACC 897
Query 921 -TTT-CATGT-GTAGGAAATGTGGAAAGGC-TTTCGCAGTCCGAGGGGATTGGAGAACAC 976
||| | ||| ||| | ||||| ||||| ||| ||||| ||| ||||||||||| |
Sbjct 898 ATTTGCTTGTCGTATG---TGTGGTAAGGCCTTT-GCAGTGAAAGGAGATTGGAGAACGC 953
Query 977 ATGAGAAGAATTGTGGCAAGCTTTGGTATTGCAT-TTGTGGATCTGATTTTAAGCACAAA 1035
|||||||||||||||| ||||||||||||||| | |||||| || ||||||||||||||
Sbjct 954 ATGAGAAGAATTGTGGAAAGCTTTGGTATTGC-TCTTGTGGCTCGGATTTTAAGCACAAG 1012
Query 1036 AGATCTCTCAAAGATCATATCAAGGCTTTTGGAAATGGCCATG 1078
|| || || || || ||| ||||||| ||||||||||| ||||
Sbjct 1013 AGGTCGCTTAAGGACCATGTCAAGGCCTTTGGAAATGGTCATG 1055
> AT1G08290.1 | Symbols: WIP3 | WIP domain protein 3 | chr1:2609996-2613242
REVERSE LENGTH=1760
Length=1760
Score = 178 bits (96), Expect = 1e-43
Identities = 309/409 (76%), Gaps = 25/409 (6%)
Strand=Plus/Plus
Query 683 TTTGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGAT 742
||||| |||||| ||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 613 TTTGCAGCAAAACATTCAATAGGTACAATAACATGCAGATGCATATGTGGGGACATGGAT 672
Query 743 CACAATACAGAAAAGGACCTGAATC-TCT-AAGGGGAACACAGCCAACAGG-A---ATGC 796
| | | ||||||||| |||| || | | || || | || | ||||| || | || |
Sbjct 673 CTGAGTTCAGAAAAGGGGCTGACTCGT-TGAAAGGCA-CA-ATCCAACCGGCAGCCATCC 729
Query 797 TAAGGCTTCCGTGCTACTGCTGCGCACCAGGC-TGCC-GCAACAACATTGACCATCCAAG 854
| |||| || ||||| ||||| || | ||| ||| | |||||||| ||||||| |
Sbjct 730 TGCGGCTGCCATGCTATTGCTGTGC-CGAGGGATGCAAG-AACAACATCAACCATCCGCG 787
Query 855 GGCAAAGCCTCTCAAAGACTTCAGAACACTTCAAACACATTACAAAAGGAAACATGGGAT 914
| | ||||| || ||||| ||| | |||||||| |||||||||||| | || ||||| |
Sbjct 788 GTCCAAGCCCCTGAAAGATTTCCGTACACTTCAGACACATTACAAACGTAAGCATGGC-T 846
Query 915 CAAA-CC-TTT-CATGTGTAGGAAA-TGTGG-AAAGGCTTTCGCAGTCCGAGGGGATTGG 969
| || || ||| | | || ||||| ||||| |||| ||| || || ||| || |||
Sbjct 847 CCAAGCCCTTTTC-T-TGC-GGAAAATGTGGCAAAGCCTTG-GCTGTGAAAGGCGACTGG 902
Query 970 AGAACACATGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGATCTGATTTTAAG 1029
|| || |||||||| || || || |||||||||||||| | |||||||| ||||| |||
Sbjct 903 AGGACCCATGAGAAAAACTGCGGAAAGCTTTGGTATTGTACATGTGGATCAGATTTCAAG 962
Query 1030 CACAAAAGATCTCTCAAAGATCATATCAAGG-CTTTTGGAAATGGCCAT 1077
|| || || |||||||| || || || | || | ||||| | ||| |||
Sbjct 963 CATAAGAGGTCTCTCAAGGACCACATTA-GGTCCTTTGGCAGTGGACAT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5