BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486219 Length=362 Score E Sequences producing significant alignments: (Bits) Value AT3G57690.1 | Symbols: AGP23, ATAGP23 | arabinogalactan protein... 573 4e-163 AT2G41905.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 226 1e-58 > AT3G57690.1 | Symbols: AGP23, ATAGP23 | arabinogalactan protein 23 | chr3:21384204-21384572 FORWARD LENGTH=369 Length=369 Score = 573 bits (310), Expect = 4e-163 Identities = 347/364 (95%), Gaps = 5/364 (1%) Strand=Plus/Plus Query 1 aaaaaacacaaaaactaaataaaaagaagaaaagaaaagCCTTTCAGGTCTC-AACAATG 59 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 9 AAAAAGCACAAAAACTAAATAAAAAGAAGAAAAGAAAAGCCTTTCAGGTCTCAAACAATG 68 Query 60 GAGATGAAGAAGATTGCTTGCGGTGTGCTTTTCGCTGCTGCCTCCATGACCGCCGTCATG 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69 GAGATGAAGAAGATTGCTTGCGGTGTGCTTTTCGCTGCTGCCTCCATGACCGCCGTCATG 128 Query 120 GCTGCTGACGAAGTCGGAGCTCCGGCACCAGGACCCGCTGCATCCGCCGCCTCGGTTGCG 179 |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 129 GCTGCTGAGGAAGTCGGAGCTCCGGCACCAGGACC---TGCATCCGCCGCCTCGGCTGCG 185 Query 180 TTGCCAGCCCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCCCTCTTCAGCTACTACTTG 239 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 186 TTGCCAGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTCTCCCTCTTCAGCTACTACTTG 245 Query 240 CACTAAGCTATCTTTCATTATGTATTAAAAATTAATTATGTGATCTTATTCATTTCCTCT 299 |||||||||||||||||||||||| ||| || | |||||||||||||||||||||||| | Sbjct 246 CACTAAGCTATCTTTCATTATGTAATAACAACTCATTATGTGATCTTATTCATTTCCTAT 305 Query 300 CTATTTCCATTTCA-TTGTTTATTAATAAAACAGAGAAAGTATTTCAAGAATAAATTTTC 358 ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 306 TTATTTCCATTTCACTTGTTTATTAATAAAACAGAGAAAGTAATTCAAGAATAAATTTTC 365 Query 359 TCTT 362 |||| Sbjct 366 TCTT 369 > AT2G41905.1 | Symbols: | BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:17495680-17496142 FORWARD LENGTH=463 Length=463 Score = 226 bits (122), Expect = 1e-58 Identities = 209/248 (84%), Gaps = 18/248 (7%) Strand=Plus/Plus Query 11 aaaacta--aataaaaagaaga-aaagaaaagCCTTTCAGGTCTC-A--A-CAATGGAGA 63 ||||||| || ||||| || | ||| |||| ||||||||||||| | | ||||||||| Sbjct 36 AAAACTACCAAAAAAAAAAACAGAAA-AAAA-CCTTTCAGGTCTCAACTAGCAATGGAGA 93 Query 64 TGAAGAAGATTGCTTGCGGTGTGC-TTTTCGCTGCTGCCTCCATGACCGCCGTCATGGCT 122 ||||||||||||| ||||| || | ||||||||||||| ||||||||||||||||||||| Sbjct 94 TGAAGAAGATTGCCTGCGGAGT-CGTTTTCGCTGCTGCTTCCATGACCGCCGTCATGGCT 152 Query 123 GCTGACGAAGTCGGAGCTCCGGCACCAGGACCCGCTGCATCCGCCGCCTCGGTTGC-GTT 181 || | || |||||||| || |||||||||||||| ||| | ||||| || || ||| Sbjct 153 GC--A-GAGGTCGGAGCACCTGCACCAGGACCCGCCGCAAGTGGAGCCTCCGTAGCTGTT 209 Query 182 GCCAGCCCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCCCTCTTCAGC-TACTACTTGC 240 || || |||||||||||||||||||||||||||||||| |||||| || ||||||||| Sbjct 210 -CCGGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCTCTCTTC-GCCTACTACTTGA 267 Query 241 ACTAAGCT 248 |||||||| Sbjct 268 ACTAAGCT 275 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16990499162 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5