BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486219
Length=362
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57690.1 | Symbols: AGP23, ATAGP23 | arabinogalactan protein... 573 4e-163
AT2G41905.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 226 1e-58
> AT3G57690.1 | Symbols: AGP23, ATAGP23 | arabinogalactan protein
23 | chr3:21384204-21384572 FORWARD LENGTH=369
Length=369
Score = 573 bits (310), Expect = 4e-163
Identities = 347/364 (95%), Gaps = 5/364 (1%)
Strand=Plus/Plus
Query 1 aaaaaacacaaaaactaaataaaaagaagaaaagaaaagCCTTTCAGGTCTC-AACAATG 59
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 9 AAAAAGCACAAAAACTAAATAAAAAGAAGAAAAGAAAAGCCTTTCAGGTCTCAAACAATG 68
Query 60 GAGATGAAGAAGATTGCTTGCGGTGTGCTTTTCGCTGCTGCCTCCATGACCGCCGTCATG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 GAGATGAAGAAGATTGCTTGCGGTGTGCTTTTCGCTGCTGCCTCCATGACCGCCGTCATG 128
Query 120 GCTGCTGACGAAGTCGGAGCTCCGGCACCAGGACCCGCTGCATCCGCCGCCTCGGTTGCG 179
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 129 GCTGCTGAGGAAGTCGGAGCTCCGGCACCAGGACC---TGCATCCGCCGCCTCGGCTGCG 185
Query 180 TTGCCAGCCCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCCCTCTTCAGCTACTACTTG 239
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 186 TTGCCAGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTCTCCCTCTTCAGCTACTACTTG 245
Query 240 CACTAAGCTATCTTTCATTATGTATTAAAAATTAATTATGTGATCTTATTCATTTCCTCT 299
|||||||||||||||||||||||| ||| || | |||||||||||||||||||||||| |
Sbjct 246 CACTAAGCTATCTTTCATTATGTAATAACAACTCATTATGTGATCTTATTCATTTCCTAT 305
Query 300 CTATTTCCATTTCA-TTGTTTATTAATAAAACAGAGAAAGTATTTCAAGAATAAATTTTC 358
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 306 TTATTTCCATTTCACTTGTTTATTAATAAAACAGAGAAAGTAATTCAAGAATAAATTTTC 365
Query 359 TCTT 362
||||
Sbjct 366 TCTT 369
> AT2G41905.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae -
798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr2:17495680-17496142 FORWARD LENGTH=463
Length=463
Score = 226 bits (122), Expect = 1e-58
Identities = 209/248 (84%), Gaps = 18/248 (7%)
Strand=Plus/Plus
Query 11 aaaacta--aataaaaagaaga-aaagaaaagCCTTTCAGGTCTC-A--A-CAATGGAGA 63
||||||| || ||||| || | ||| |||| ||||||||||||| | | |||||||||
Sbjct 36 AAAACTACCAAAAAAAAAAACAGAAA-AAAA-CCTTTCAGGTCTCAACTAGCAATGGAGA 93
Query 64 TGAAGAAGATTGCTTGCGGTGTGC-TTTTCGCTGCTGCCTCCATGACCGCCGTCATGGCT 122
||||||||||||| ||||| || | ||||||||||||| |||||||||||||||||||||
Sbjct 94 TGAAGAAGATTGCCTGCGGAGT-CGTTTTCGCTGCTGCTTCCATGACCGCCGTCATGGCT 152
Query 123 GCTGACGAAGTCGGAGCTCCGGCACCAGGACCCGCTGCATCCGCCGCCTCGGTTGC-GTT 181
|| | || |||||||| || |||||||||||||| ||| | ||||| || || |||
Sbjct 153 GC--A-GAGGTCGGAGCACCTGCACCAGGACCCGCCGCAAGTGGAGCCTCCGTAGCTGTT 209
Query 182 GCCAGCCCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCCCTCTTCAGC-TACTACTTGC 240
|| || |||||||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 210 -CCGGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCTCTCTTC-GCCTACTACTTGA 267
Query 241 ACTAAGCT 248
||||||||
Sbjct 268 ACTAAGCT 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16990499162
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5