BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486223
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57730.1 | Symbols: | Protein kinase superfamily protein | ... 1024 0.0
AT3G57720.1 | Symbols: | Protein kinase superfamily protein | ... 538 6e-152
AT3G57710.1 | Symbols: | Protein kinase superfamily protein | ... 448 1e-124
> AT3G57730.1 | Symbols: | Protein kinase superfamily protein
| chr3:21389964-21391562 REVERSE LENGTH=1599
Length=1599
Score = 1024 bits (554), Expect = 0.0
Identities = 673/730 (92%), Gaps = 9/730 (1%)
Strand=Plus/Plus
Query 737 ATAGAAGCGGAAGACGTGCTGGGCACATATGGTTACCTTGATCCATTATACTTTGCAACT 796
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 849 ATAGAAGCGGAAGACGTGCTGGGTACATATGGTTACCTTGATCCATTATACTTTGCAACT 908
Query 797 AGAATTGTGACAGAGTATACTGATGTGTACAGCTTTGGAGTCCTTTTGATGGTTGTTATG 856
|||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 909 AGAATTGTGACAGAATATACGGATGTGTACAGCTTTGGAGTCTTTTTGATGGTTGTTATC 968
Query 857 ACTGGCAGATCGGTTTACTTCACTGGACCTGACGGATATCGAGTAGGTATTCTTGCATAT 916
||||| | ||||||||||||||| ||| |||| || |||| ||||||||||||| ||||
Sbjct 969 ACTGGTATATCGGTTTACTTCACCGGATCTGATGGGTATCCTGTAGGTATTCTTGGATAT 1028
Query 917 GTGAAAGGTTTATCTGAGAATGGGAAGCTCAGTGAAGTAATATGTCCTATGATGATGCAA 976
||||||| ||| |||||||||||||||||| |||| || ||| ||||||||| ||| ||
Sbjct 1029 ATGAAAGGCTTAGCTGAGAATGGGAAGCTCAATGAAATAGTATATCCTATGATAATGAAA 1088
Query 977 GACATGACAAGTGCTCAAAGATTGCAGGTGGAAGCGTGTGTTTTACTTGCACTGAGATGC 1036
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1089 GAGATGACAAGTGCTCAAAGATTGCAGGTGGAAGCATGCGTTTTACTTGCACTGAGATGC 1148
Query 1037 TGCGAGGAGAGGGTTGAAGACAGACCGAAGATGATTCAGGTAGCTAAAGAACTCAAGCGG 1096
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 TGCGAGGAGAGGGTAGAAGACAGACCGAAGATGATTCAGGTAGCTAAAGAACTCAAGCGG 1208
Query 1097 ATAGAACATCATGTTTTGAGATCCTAGCTAGTGATCCTCTATACTCTCAGACTGTATAGC 1156
|| |||||||||||||||||||||||||||| |||| || |||||| ||||||||||||
Sbjct 1209 ATTGAACATCATGTTTTGAGATCCTAGCTAGAGATCAGCTCTACTCTTAGACTGTATAGC 1268
Query 1157 CAAGTTTCAAATTTATTAGTTCTGAAAGTTTGGAACTCAAGCGGATTATGGACCTGAAGG 1216
|||||||||||||||||| || |||||||||||||| | | |||| ||||||||||||
Sbjct 1269 CAAGTTTCAAATTTATTACTTTTGAAAGTTTGGAACGC-ATATGATTGTGGACCTGAAGG 1327
Query 1217 ATGCCAAAGAGTTTAAGGGGTTAGAAAGACTT-TGAAAGCCTCTATGTCCGACCCAAACA 1275
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1328 ATGCCAAAGAGTTTAAGGGGTTAGAAAGACTTGTGAAAGCCTCTATGTCCGACCCAAACA 1387
Query 1276 AAGTCTACTTTGTGTAGAGTTGTCTAAAAGCCTTTGCTTATATATGGTCTTTCTCTGTTT 1335
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1388 AAGTCTACTTTGTGTAGAGTTGTCTAAAAGCCTATGCTTATATATGGTCTTTCTCTGTTT 1447
Query 1336 TTCAGATTTCTCTAGTATTTTTGTTGATATGTAACATGGCTAGATTTCAGTTTGGGCCTA 1395
||||| |||||||||||||||||||| |||||| ||||||||||||||||||| |||
Sbjct 1448 TTCAGTTTTCTCTAGTATTTTTGTTGTTATGTA---TGGCTAGATTTCAGTTTGGCCCTG 1504
Query 1396 ATGGCGTCATAATGAAACTGCAAAGCTATTTCTGCATTATTAGTTCCAGAAGTTACAAAG 1455
||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1505 ATGGCGTCATAATGAAACTGCAAAGCT----CTGCATTATTAGTTTCAGAACTTACAAAG 1560
Query 1456 ATGATTTACA 1465
||| ||||||
Sbjct 1561 ATGGTTTACA 1570
Score = 852 bits (461), Expect = 0.0
Identities = 548/590 (93%), Gaps = 6/590 (1%)
Strand=Plus/Plus
Query 149 AAGAAGTTGAAACAAAATCTGAGATCTGGGTCCGT-GAAAAAGACGGAAAAAAGCATGAA 207
||||| ||||| |||||||||||| |||||||| | |||||||| |||||||||||||||
Sbjct 183 AAGAAATTGAAGCAAAATCTGAGAACTGGGTCC-TGGAAAAAGAAGGAAAAAAGCATGAA 241
Query 208 GAAGGAAAGATGGTTTTTGGAGAACGGAAGTATCTTCTTAAAAGAGCTCATCGCTGATTG 267
||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||
Sbjct 242 GAAGGAAAGATGGTTCTTAGAGAATGGAAGTATCTTCTTAAAAGAGCTCATCGTTGATTG 301
Query 268 TAATGGTAAATCCATTCCTATACGTAGCTTTACCTCTTCCCAGATTCGCAAAGCCACCAA 327
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 302 TAATGGTAAATCCATTCCTATACGTAGCTTTACTTCTTCCCAGATTCGTAAAGCCACCAA 361
Query 328 GAATTTCGATTCCAGTTGTTTTGTCA-CTGAAGAAGGGTTCTACATATGGTACAAAGGTG 386
||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 362 GAATTTCGATTTAAGCTGTTTTGT-AGCTGAAGAAGGGTTCTACATATGGTACAAAGGTG 420
Query 387 TTATCGAAGATAGATCTTACATGATCAAGAGATTCTCTGAGTATAAAGTCACAGATTACA 446
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 TAATCGAAGATAGATCTTACATGATCAAGAGATTCTCTGAGTATAAAGTCACTGATTACA 480
Query 447 GAGTAGGAGAGGTTTATAAAGACATTGTCTTGTCTGCTCGGATGAGCAACCACAGCAACT 506
||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 481 GAGTAAGTGAGGTTTATAAAGACATTGTCTTGTCTGCTCGTATGAGCAACCACAACAACT 540
Query 507 TTCTTCAATTATTAGGATGTTGTCTTGATTTCCCTTTTCCGGTTCTTGTGTTTGAATTTG 566
||||| || || |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 541 TTCTTAAACTACTAGGATGTTGTCTTGAGTTCCCTTTTCCTGTTCTTGTGTTTGAATTTG 600
Query 567 CTGAACATGGATTTTTGAATCATCGAGGAGGTGTTACCGTTAACGGGGAGGAATCTTTAT 626
|||| |||||| |||||||| | ||||||||| |||| |||||||| || || |||||||
Sbjct 601 CTGAGCATGGAGTTTTGAATTACCGAGGAGGTATTACGGTTAACGGTGAAGAGTCTTTAT 660
Query 627 TGCCTTTGAGTTTGAGGTTGAAGATTGGGAAGGAGATTGCAAATGCCTTGGCTTATCTTC 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGCCTTTGAGTTTGAGGTTGAAGATTGGGAAGGAGATTGCAAATGCCTTGGCTTATCTTC 720
Query 687 ACATGGC-TTTCCCTAAGATCATTATATTTAGAGATGTGAAGCCAATGCA 735
||||||| ||||| ||||||||| |||| |||||||||||||||| ||||
Sbjct 721 ACATGGCGTTTCC-TAAGATCATCATATATAGAGATGTGAAGCCACTGCA 769
Score = 150 bits (81), Expect = 3e-35
Identities = 104/115 (90%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 1 GTCTCTCATTTCGTTCTGTGGAATTTTCAACGATGGGTTCCGTCTTTTGTCTTCAAACCG 60
|||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||
Sbjct 1 GTCTATCATTTCGTTCTGTGGAATTTTCAACGATGGGTTTTGTCTTCTGTATTCAAGCCG 60
Query 61 GGAAAAGGTACTGTCTT-GTT-TGCACCCAGAAAGTTTAAAGATTGGATTTTCAG 113
||||||||| ||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 61 GGAAAAGGTGCTGTCTTTGTAATGCACCCAGAAAGTTTAAAGAGTGGATTTTCAG 115
> AT3G57720.1 | Symbols: | Protein kinase superfamily protein
| chr3:21387722-21389726 FORWARD LENGTH=2005
Length=2005
Score = 538 bits (291), Expect = 6e-152
Identities = 512/615 (83%), Gaps = 30/615 (5%)
Strand=Plus/Plus
Query 136 aaaTCAGATATTTAAGAAGTTGAAACAAAATCTGAGATCTGGGTCCG-T-GA-AAAA-GA 191
||||| ||| | ||||||||||| || | |||||||||||| | || | || |||| ||
Sbjct 48 AAATC-GATGGTGAAGAAGTTGAAGCAGAGTCTGAGATCTGGAT-CGTTAGAGAAAAGGA 105
Query 192 CGG---A--AAAAAG-CA-TGAAGAAGGAAAGATGGTTTTTGGAGAACGGAAGTATCTTC 244
|| | |||||| || | | |||| |||| ||||| || || |||||||| ||||||
Sbjct 106 AGGAAAAGGAAAAAGACATTCAGGAAGAAAAG-TGGTTCTTAGACAACGGAAGCATCTTC 164
Query 245 TTAAAAGAGCTCATCGCTGATTGTAATGGTAAATCCATTCCTATACGTAGCTTTACCTCT 304
|| ||||| || || ||||||||||| |||||||||||||||||||||| |||| | |||
Sbjct 165 TTGAAAGAACTTATTGCTGATTGTAACGGTAAATCCATTCCTATACGTAACTTTTCTTCT 224
Query 305 TCCCAGAT-TCGCAAAGCCACCAAG-AATTTCGATTCCAGTTGTTTTGTCACTGAAGAAG 362
|||||| | | ||||| | |||| || |||| ||||||||||||||| || | ||| |
Sbjct 225 GACCAGATCTTG-AAAGCTA-CAAGTAACTTCGGTTCCAGTTGTTTTGTAACCGCAGAGG 282
Query 363 GGTTCTACATATGGTACAAAGGTGTTATCGAAGATAGATCTTACATGATCAAGAGATTCT 422
|||| || |||||||||||||| | || |||||||||||||||||||||||||||||||
Sbjct 283 GGTTTTATGTATGGTACAAAGGTATCATAGAAGATAGATCTTACATGATCAAGAGATTCT 342
Query 423 CTGAGTATAAAGTCACAGATTACAGAGTAGGAGAGGTTTATAAAGACATTGTCTTGTCTG 482
||||||||||||| || | |||||||||| ||||||||| || || |||||||||||||
Sbjct 343 CTGAGTATAAAGTTACTCAATACAGAGTAGCAGAGGTTTACAACGAAATTGTCTTGTCTG 402
Query 483 CTCGGATGAGCAACCACAGCAACTTTCTTCAA-TTATTAGGATGT-TGTCTTGA-TTTCC 539
|||||||||||||||||| |||||||||| || |||| ||||| | |||||||| |||
Sbjct 403 CTCGGATGAGCAACCACAACAACTTTCTTAAACTTAT-AGGAT-TCTGTCTTGAGTTTAG 460
Query 540 CTTTTCCGGTTCTTGTGTTTGAATTTGCTGAACATGGATTTTTGAATCATC-GAGGAGGT 598
| ||||||||||||||||||||| ||| ||||||||| |||||||||| | ||||||||
Sbjct 461 -TCTTCCGGTTCTTGTGTTTGAATATGCAGAACATGGAGTTTTGAATCA-CAGAGGAGGT 518
Query 599 GTTACCGTTAACGGGGAGGAATCTT-TATTGCCTTTGAGTTTGAGGTTGAAGATTGGGAA 657
|||| || || ||||||||| || |||||||||||||||| |||||||||||||| ||
Sbjct 519 GTTATAGTCAATGGGGAGGAAG-TTATATTGCCTTTGAGTTTAAGGTTGAAGATTGGAAA 577
Query 658 GGAGATTGCAAATGCCT-TGGCTTATCTTCACATGGCTTTCCCTAAGATCATTATATTTA 716
||||||||||||||| | || |||||||||||||||| ||||| |||||| | ||| ||
Sbjct 578 GGAGATTGCAAATGC-TGTGACTTATCTTCACATGGCATTCCCCAAGATCCTCATACATA 636
Query 717 GAGATGTGAAGCCAA 731
|| | | |||||||
Sbjct 637 GACACATTAAGCCAA 651
> AT3G57710.1 | Symbols: | Protein kinase superfamily protein
| chr3:21384676-21387399 REVERSE LENGTH=2724
Length=2724
Score = 448 bits (242), Expect = 1e-124
Identities = 444/539 (82%), Gaps = 23/539 (4%)
Strand=Plus/Plus
Query 212 GAA-AGATGGTTTTTGGAGAACGGAAGTATCTTCTTAAAAGAGCTCATCGCTGATTGTAA 270
||| || ||||| ||||| |||||||| |||||||||| ||| || | |||||||||||
Sbjct 168 GAAGAGGTGGTTCTTGGATAACGGAAGCATCTTCTTAAGAGAACTTGTAGCTGATTGTAA 227
Query 271 TGGTAAATCCATTCCTATACGTAGCTTTACCT-CTTCCCAGAT-TCGCAAAGCCACCAAG 328
||||||||||||||||| || || ||| || || ||||| | | |||||||||||
Sbjct 228 CGGTAAATCCATTCCTATTCGCAG-TTTTTCTCCTGAGCAGATATTG-AAAGCCACCAAC 285
Query 329 AATTTCGATTCCAGTTGTTTTGTCACTG-AAGAAGGGTTCTACATATGGTACAAAGGTGT 387
||||||||||| || ||||||||| | | |||| | | ||| | |||||| | |||||
Sbjct 286 AATTTCGATTCTAGCTGTTTTGTCTC-GCAAGATGTATACTATAAATGGTATAGAGGTGA 344
Query 388 TATCGAAGATAGATCTTACATGATCAAGAGATTCTCTGAGTATAAAG-TCACA-G---AT 442
|| |||||||||||||||||||||||||||||||| ||| || || | ||| | |
Sbjct 345 AATTGAAGATAGATCTTACATGATCAAGAGATTCTCAGAGGAT-GAGATTACAGGAAAAC 403
Query 443 TAC--AGAG-TAGGAGAGGTTTATAAAGACATTGTCTTGTCTGCTCGGATGAGCAACCAC 499
|| |||| || ||||||||| || |||||||||||||||||||||||||| || |||
Sbjct 404 GACATAGAGTTA-AAGAGGTTTACAACGACATTGTCTTGTCTGCTCGGATGAGTAATCAC 462
Query 500 AGCAACTTTCTTCAA-TTATTAGGATGTTGTCTTGA-TTTCCCTTTTCCGGTTCTTGTGT 557
|| |||||||||||| || |||||||||||||| || ||| |||||||||||||||||||
Sbjct 463 AGTAACTTTCTTCAACTT-TTAGGATGTTGTCTCGAGTTT-CCTTTTCCGGTTCTTGTGT 520
Query 558 TTGAATTTGCTGAACATGGATTTTTGAATCATCGAGGAGGTGTTACCGTTAACGGGGAGG 617
|||||||||| ||||||||| | ||||||| ||||||||||||| ||||| || || |
Sbjct 521 TTGAATTTGCAGAACATGGAGCTATGAATCAGCGAGGAGGTGTTATAGTTAATGGTGAAG 580
Query 618 AATCTTTATTGCCTTTGAGTTTGA-GGTTGAAGATTGGGAAGGAGATTGCAAATGCCTTG 676
||||||||||||| | |||| | | |||||||||||||||| |||||||| ||||| ||
Sbjct 581 AATCTTTATTGCCGTGGAGTGT-ACGGTTGAAGATTGGGAAAGAGATTGCTAATGCGGTG 639
Query 677 GCTTATCTTCACATGGCTTTCCCTAAGATCATTATATTTAGAGATGTGAAGCCAATGCA 735
|||||||||||| ||| |||||||||||||| ||| ||||||||| || || |||||
Sbjct 640 ACTTATCTTCACACGGCATTCCCTAAGATCATCATACATAGAGATGTTAAACCGATGCA 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72238584255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5