BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486224
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57740.1 | Symbols: | Protein kinase superfamily protein | ... 1642 0.0
> AT3G57740.1 | Symbols: | Protein kinase superfamily protein
| chr3:21392671-21393744 FORWARD LENGTH=1074
Length=1074
Score = 1642 bits (889), Expect = 0.0
Identities = 1015/1077 (94%), Gaps = 3/1077 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTGTTGGAGGAACAACACAAAGAAGAAGAAGAACTTTGAAGTAAATCAACGGCTA 60
||||||||||||||||| || | |||||||||||||| |||| ||||||||||| |
Sbjct 1 ATGAGTTGTTGGAGGAAGAAGTC---GAAGAAGAAGAACTCAGAAGCAAATCAACGGCAA 57
Query 61 AGATTGTTCCAAGAGAACGGGAAGGTACTCTTAGAAGATCTCATCGAGCTTTGCAATGGC 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AGATGGTTCCAAGAGAACGGGAAGGTACTCTTAGAAGATCTCATCGAGCTTTGCAATGGC 117
Query 121 AAATCCAATCCAATCAAAACCTTCTCTGCTAAAGAAATCCTCGAAGCCACCGATAACTTC 180
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 118 AAATCCAATCCAATCAAAACCTTCTCTGCTGAAGAAATCCTCCAAGCCACCGATAACTTC 177
Query 181 AGCGAGAGCAATCTCGTGATTCGGTTCGAGTTTATGTACAGAGATATGCTCCAAAACCGT 240
||||||||||||||||||||||||||| | ||||||||||||| ||| ||||||||||||
Sbjct 178 AGCGAGAGCAATCTCGTGATTCGGTTCAACTTTATGTACAGAGGTATACTCCAAAACCGT 237
Query 241 CCTGTTCTAATCAAAAGAACCATATGGAGTTACTACAAATCCGATACATTAGATAAGATC 300
|||||| | ||||||||| ||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct 238 CCTGTTTTGATCAAAAGAGCCACATGGAACTACTACAAATCTGATACATTAGAAAAGATC 297
Query 301 TGTCGTGACATAGCAGTCTCATCAATGGTGAGTGGTCACAAGAATTTCCTCAAATTTTTA 360
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 298 TGTCGTGACATAGCGGTCTCATCAATGGTTAGTGGTCACAAGAATTTCCTCAAATTGTTA 357
Query 361 GGATGTTGTCTTGAGTTTGAGCATCCGGTCTTAGTTTGTGAGTATGCAGAACGTATACCT 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 358 GGATGTTGTCTTGAGTTTGAGCATCCGGTCTTAGTTTGCGAGTATGCAGAACGTATACCA 417
Query 421 TTTAATACTCCAAACCCGGAAATGTTGTTACCTTGGGGAATGCGAATAAAGGTTGCGAAA 480
|| ||||||||||||||||||||||||||||| ||| |||||||||||||| |||| |||
Sbjct 418 TTCAATACTCCAAACCCGGAAATGTTGTTACCGTGGAGAATGCGAATAAAGATTGCCAAA 477
Query 481 GAGATTGCGATTGCGGTTTCTTACCTTCACACCGCCTTTTCAAGAACTATGATTCATACG 540
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 478 GAGATTGCGATTGCGGTTTCTTACCTTCACACCGCGTTGTCAAGAACTATGATTCATACG 537
Query 541 GATATACAACCTTCTAACATTTTCTTGGATTCAAATGGGACAGCAAAGCTAAGTGGGTTT 600
||||||||||||| |||||||||| ||||||| |||||||||||||||||||||| |||
Sbjct 538 GATATACAACCTTTTAACATTTTCGTGGATTCCAATGGGACAGCAAAGCTAAGTGACTTT 597
Query 601 TGTCTTTGTATCTCAATTCCTGAAGGAGAGACATTTGTTAAGGTTCATGCTGATAGAGTA 660
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGTCTTTGTATCGCAATTCCAGAAGGAGAGACATTTGTTAAGGTTCATGCTGATAGAGTA 657
Query 661 GAAGGCACATTAGATTATCTTGAGTATAACTATGCGGCGACCGGATTGATCACTGAGTAT 720
||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 658 GAAGGAACATTAGATTATCTAGAGTATAACTACGCGGCGACCGGATTGATCACCGAGTAT 717
Query 721 ACCGATGTTTTTAGCTTCGGAGTGTTGTTGCAAAACTTTTTCACCAGAATGTATGGAGTG 780
||||||||||||||||| |||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 718 ACCGATGTTTTTAGCTTTGGAGTGTTGTTGCAAAACTTTTTCACAAGAACGTACGGAGTG 777
Query 781 GTTGATTGTTGTTGCAGTGAAGATGAGAGTCTATTTGAAGAGTTTGAAGACAAACAAAAC 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTTGATTGTTGTTGCAGTGAAGATGAGAGTCTATTTGAAGAGTTTGAAGACAAACAAAAT 837
Query 841 GTAATGAATCTAAGGATTTCAGATAGGATATCCAAATTTATAGAAGAGGGAAGAATCTTT 900
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 838 GTAATGAATCTAAGGATTTCAGATAGGATATCCAAATTTGTGGAAGAGGGAAGAATCTTT 897
Query 901 GAGATGTTGGATCCAAAAATGTTGGAAAGTATGGGTGATGATGAAACCGAAGAACACAAG 960
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GACATGTTGGATCCAAAAATGTTGGAAAGTATGGGTGATGATGAAACCGAAGAACACAAG 957
Query 961 ATACGGCGAATGGAAGCAGTTCTTATGCTGTCACTCAGATGCACTGGTCATAGAGGTGAT 1020
||||| |||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 958 ATACGACGAATGAAAGCAGTCCTTATGCTCTCACTCAGATGTACTGGTCATAGAGGTGAT 1017
Query 1021 GTTCCAAAGATGATGGAAGTTGCCAAGGAACTCAAAAGGATTGAGAGATGGACATAG 1077
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1018 GTTCCAAAGATGATGGAAGTTGCCAAGGAACTAAAAAGGATTGAGAGATGGACATAG 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52760772795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5