BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486225
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57750.1 | Symbols: | Protein kinase superfamily protein | ... 1823 0.0
AT4G03156.1 | Symbols: | small GTPase-related | chr4:1396002-1... 178 1e-43
AT4G08190.1 | Symbols: | P-loop containing nucleoside triphosp... 159 4e-38
> AT3G57750.1 | Symbols: | Protein kinase superfamily protein
| chr3:21394024-21395288 FORWARD LENGTH=1265
Length=1265
Score = 1823 bits (987), Expect = 0.0
Identities = 1056/1090 (97%), Gaps = 1/1090 (0%)
Strand=Plus/Plus
Query 74 AGATGAGCAAGAACAATAAGAAGAAGAGAAGATCGGATTTGAAGAACGGAGGGATTCTAT 133
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 25 AGATGAGCAAGAACAATAAGAAGAAGAGAAGATGGGATTTGAAGAACGGAGGGATTCTAT 84
Query 134 TAGAGGAGCTAATCGCTTCCTTCGACGGCAAAACCAATCCGATTCGTTGCTTCTCCTCCG 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 TAGAGGAGCTAATCGCTTCCTTCGACGGCAAAACCAATCCGATTCGTTGCTTCTCCTCCG 144
Query 194 ATCAGATCCTTAAAGCGACCGACAATTTCTCCGAGAGCAGAATTATCTCCAGCTGGGGAT 253
|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 145 ATCAGATCCTTAAAGCTACCGACAATTTCTCCGAAAGCCGAATTATCTCCAGCTGGGGAT 204
Query 254 ACTTCATCTGGTACAAAGGCGTAATCGAAGAAAGACCAGTTTCAATCAAGAAATGGTCGA 313
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 205 ACTTCATATGGTACAAAGGCGTAATCGAAGAAAGACAAGTTTCAATCAAGAAATGGTCGA 264
Query 314 GTCAGAATCTCTCAAGCTTCACAGAAGCGTATCGAGATATCTCTGTATCCTCTCAGATGA 373
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 265 GTCAAAATCTCTCAAGCTTCACAGAAGCGTATAGAGATATCTCTGTATCCTCTCAGATGA 324
Query 374 GTGGACACAAGAATGCTTTAAAGCTTATAGGTTGTTGTTTGGAATTTGATCTTCCAGCTT 433
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 325 GTGGACACAAGAACGCTTTAAAGCTTATAGGTTGTTGTTTGGAGTTTGATCTTCCAGCTT 384
Query 434 TAATCTGTGAATACACAGAACACGGACCGCTTAATAGAGACGGAGGACTCTCAAGTGGAG 493
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 TAGTCTGTGAATACACAGAACACGGACCGCTTAATAGAGACGGAGGACTCTCAAGTGGAG 444
Query 494 AGGTTTTACCATGGAAAGTGCGATTGAAGATTGCTAAGGAGATAGCTAGTTCTGTGACTT 553
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 445 TGGTTTTACCATGGAAAGTGAGATTGAAGATTGCTAAAGAGATAGCTAGTTCTGTGACTT 504
Query 554 ATCTTCACACGGCGTTTCCAGAGACTATAATCCATCGGAATATAAATCCAACGAACATTT 613
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 505 ATCTTCACACGGCGTTTCCAGAGACTATAGTCCATCGGAATATAAATCCGACGAACATTT 564
Query 614 TCATTGACGAGAATTGGACGGCGAAGCTTTCTGATTTCTGGTTCTGTGTTGCTATACCAG 673
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 565 TCATTGATGAGAATTGGACGGCGAAGCTTTCTGATTTCTGGTTCTGTGTTGCAATACCAG 624
Query 674 AAGGGGAATTGTATGTAGAAGATGATGTGAAAGGTGTGATTGGTTTTGTTGATCCAGATT 733
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 625 AGGGGGAATTGTATGTAGAAGATGATGTGAAAGGTGTGATTGGTTTTGTTGATCCGGACT 684
Query 734 ATTACTGGACAATGAAAGTTACTGAGAAAGTTGATATTTATAGCTTTGGTGTTGTGATGT 793
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 685 ATTACTGGACAATGAAAGTTACTGAGAAAGTGGATATTTATAGCTTTGGTGTTGTGATGT 744
Query 794 TGGTTTTGTTGTCTGGAAGAGCTGCTGTGTTTAATGGACCAGATGAGGCTCCTATGTCGC 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 TGGTTTTGTTGTCTGGAAGAGCTGCTGTGTTTAATGGACCAGATGAGGCTCCTATGTCGC 804
Query 854 TTAACGATCATGTGTCTGAGGTAATGGAGAAAGGTGAGTTTGATGAGATTGTTGATAAAG 913
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TTAATGATCATGTGTCTGAGGTAATGGAGAAAGGTGAGTTTGATGAGATTGTTGATAAAG 864
Query 914 AGATATGGAATGATTTGGGTGGGGATGATGATTTGGTTCTGAGACGGTCACAGGTTAAAG 973
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 865 AGATATGGAATGATTTGGGTGGGGATGATGATTTGGTTTTGAGACGGTCTCAGGTTAAAG 924
Query 974 CGTTTCTTAGATTAGCGTTGAGATGTGTACGATATAAGAAGCAAGATCCAGTGGGTAGTA 1033
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||
Sbjct 925 CGTTTCTTAGATTAGCGTTGAGATGTGTAAGATATAAGAAGGAAGATCCAGTGAGTGGTA 984
Query 1034 TGCTTGAAGTTGCTAAAGAGCTCAAATTGATTGAGAAACTCTCTTGATTAGTCTTCCTTG 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 TGCTTGAAGTTGCTAAAGAGCTCAAATTGATTGAGAAACTCTCTTGATTAGTCTTCCTTG 1044
Query 1094 TCTTGTTAGTGTCTTTATACCTCTTGAAAGAATGATAACTTCTGAGAAGTTTTAGTGATA 1153
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TCTTGTTAGTTTCTTCATACCTCTTGAAAGAATGATAACTTCTGAGAAGTTTTAGTGATG 1104
Query 1154 ACTCAAATGT 1163
||||| |||
Sbjct 1105 TCTCAA-TGT 1113
> AT4G03156.1 | Symbols: | small GTPase-related | chr4:1396002-1396784
REVERSE LENGTH=234
Length=234
Score = 178 bits (96), Expect = 1e-43
Identities = 110/117 (94%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 849 GTCGCTTAACGATCATGTGTCTGAGGTAATGGAGAAAGGTGAGTTTGATGAGATTGTTGA 908
||| ||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 6 GTCACTTAACGATCACGTGCCTGAGTTAATGGAGAAAGGTGGGTTTGATGAGATTGTTGA 65
Query 909 TAAAGAGATATGGAATGATTTGGGTGGGGATGATGATTTGGTTCTGAGACGGTCACA 965
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TAAAGAGATTTTGAATGATTTGGGTGGGGATGATGATTTGGTTCTGAGACGGTCACA 122
> AT4G08190.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:5174523-5175476
REVERSE LENGTH=384
Length=384
Score = 159 bits (86), Expect = 4e-38
Identities = 100/107 (93%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 853 CTTAACGATCATGTGTCTGAGGTAATGGAGAAAGGTGAGTTTGATGAGATTGTTGATAAA 912
||||| ||||| ||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 10 CTTAAAGATCACGTGCCTAAGATAATGGAGAAAGGTGAGTTTGATGAGATTGTTGATAAA 69
Query 913 GAGATATGGAATGATTTGGGTGGGGATGATGATTTGGTTCTGAGACG 959
||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 70 GAGATTTTGAATGATTTGGGTGGGGATGATGATTTGGTTCTGAGACG 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58885239285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5