BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486227
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57760.1 | Symbols: | Protein kinase superfamily protein | ... 2001 0.0
> AT3G57760.1 | Symbols: | Protein kinase superfamily protein
| chr3:21395593-21397244 FORWARD LENGTH=1416
Length=1416
Score = 2001 bits (1083), Expect = 0.0
Identities = 1230/1301 (95%), Gaps = 9/1301 (1%)
Strand=Plus/Plus
Query 1 ATGGTGCTTTCGCTTCTGAGTACCAATGATTTG--AT-TT-TCTCTTTATTTCAGCTGTT 56
|||||| |||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 8 ATGGTGTTTTCGCTTCTGAGTACCAATGATTTGAAATATTCTCTCTTTATTTCAGCTGTT 67
Query 57 GAGAGTGGATTAATGGAGTTTCTCTGAGGAGTTTACACACATGAAATTTTGTGCTCTTAA 116
|||||||||||||||||||| ||||||||||||||||||||| |||| | ||||||||||
Sbjct 68 GAGAGTGGATTAATGGAGTTCCTCTGAGGAGTTTACACACATTAAATCTGGTGCTCTTAA 127
Query 117 GGATAAACCTTGTAGAGAGTCTTTACGATGGATTGGCTGAGAACAAAAAGAATCGGAGCC 176
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 128 GGATAAATCTTGTAGAGAGTCTTTACGATGGATTGGTTGAGAACAAAAAGAATCAGAGCC 187
Query 177 AAGACAAGGAAGAGGAATGTCAAAGAGAATGGCGAGGTTGTTCTAAAAGAGCTCATTGAA 236
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 AAGAAAAGGAAGAGGAATGTCAAAGAGAATGGCGAGGTTGTTCTAAAAGAGCTCATTGAA 247
Query 237 TGTTGTGATGGAAAATGCAATCCTATCAAGAACTTCTCTTACGATCAGATCATCAAAGCA 296
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 248 TGTTGTGATGGAAAATGCAATCCTATCAAGAACTTCTCTTACGACCAGATCATCAAAGCA 307
Query 297 ACAGATAACTTCTCCCAAAGTAACCGTGCTTCCCGGATTGATGTTTATTACCGTTGCTAT 356
||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 308 ACAAATAACTTCTGCCAAAGTAACCGTGCTTCTCGGATTGATGTTTATTACCGTTGCTAT 367
Query 357 AAAGGCATGCTCGATGACCGCCCAGTACTTATCAAGAAAGGAAAATACACACTTGATATG 416
||||||||||| |||||||| ||||| || ||||||||||| ||||||||||||||||||
Sbjct 368 AAAGGCATGCTTGATGACCGGCCAGTGCTCATCAAGAAAGGGAAATACACACTTGATATG 427
Query 417 AAAGAGATTTGTCGCGACATAGCGATCTCATCGATGGTTAGTGGTCATAAGAACTTCCTC 476
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 428 AAAGAGATTTGTCGCGACATAGCTATCTCATCGATGGTTAGTGGTCATAAGAACTTCCTC 487
Query 477 AAGCTATTGGGATGTTGTCTTGAGTTCACTCCCCCTGTCTTAGTTTTTGAGTATGCAGAG 536
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 488 AAACTATTGGGATGTTGTCTTGAGTTCACTCCTCCTGTCTTAGTTTTTGAGTATGCAGAG 547
Query 537 ATTATAACTCTTGGTCCGCTGCTTGTATCTCATCCGAGAAATCTGAGGAGGATCAAGATA 596
|||||||||||||||| ||||| |||||||||| || ||||||||||||| ||||||
Sbjct 548 GTTATAACTCTTGGTCCATTGCTTACATCTCATCCGGGATATCTGAGGAGGATAAAGATA 607
Query 597 GCAAGAGAGGTCGCAAACT-CTTTGACTTATCTTCATACCGCATTTTCAAGAGTTTTCAT 655
||||||||||||||||| | |||||||||| ||||| || ||||| ||||||||||||||
Sbjct 608 GCAAGAGAGGTCGCAAA-TGCTTTGACTTACCTTCACACAGCATTCTCAAGAGTTTTCAT 666
Query 656 CCATTCGAATCTAGATCCTTTCACCATTTTCTTAGATGGAAATGGGGTCGCAAAGCTCGG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCATTCGAATCTAGATCCTTTCACCATTTTCTTAGATGGAAATGGGGTCGCAAAGCTCGG 726
Query 716 GAATTTCTGCAACTGTATCACAATTCCAGAAGGAGAGACATTTGTTCATGATGATACATT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 GAATTTCTGCAACTGTATCACAATTCCAGAAGGAGAGACATTTGTTCATGATGATACATT 786
Query 776 ACAGAAATACCATGAGTTTAGGCACATTACATTAAAGGGAACCCATGGACTTGGTGTATG 835
|||||||||||||||||| ||||| | |||||||||||| || ||||| |||||||||||
Sbjct 787 ACAGAAATACCATGAGTTGAGGCATAATACATTAAAGGGGACACATGGGCTTGGTGTATG 846
Query 836 TAACTTACCGGTCATTGATCCCGACTGCAAATCAACCGGTAATGTCACGACAAAGACTGA 895
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 847 TAACTTACCGGTCATTGATCCCGACTACAAATCAACCGGTAAAGTCACGACAAAGACTGA 906
Query 896 TATGCACAGCTTTGGAGCATTCATGCTAGCTCTTGTCCAGATAAGGGAAGTTGATGATGA 955
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 907 TATGCACAGCTTTGGAGGATTCATGCTAGCTCTTGTGCAGATAAGGGAAGTTGATGATGA 966
Query 956 GCTATCTCTATCTTCGGATATGCTGAGAGCATTATCTGATTTGTTCATCAAACCTTATGA 1015
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 967 GCTATCTCTATCTTCGGATATGCTGAGAGCATTAGCTGACTTGTTCATCAAACCTTATGA 1026
Query 1016 TGATGTTCGCTATGTTCGCTTCCCGCTTCACCATCGTGTCTCTAAGATACTGAGGAAGTT 1075
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1027 TGATGTTCGCTATGTTCACTTCCCGCTTCACCATCATGTTTCTAAGATACTGAGGAAGTT 1086
Query 1076 TGGGTATGCAGAGGTTGTAGATTCAGATATGAGTGAGGTAGCTGTTTGGCCAGTTAAAGC 1135
||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||
Sbjct 1087 TGGGTATGCAGAGGTTGTAGATTCAGATATGAGCGAGGTAGCTGCTTGGCCAATTAAAGC 1146
Query 1136 CTTTCTTAGATTAGCGTTGAGATGCATTGGATGCAACTTGGGAGACCCGTTGAATAGCAT 1195
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1147 CTTTCTTAGATTAGCGTTGAGATGCATTGGATGCAAGTTGGGAGACCCGTTGAGTAGCAT 1206
Query 1196 GATTCAAGTGGCGAACGAGCTCAGGCTGATTGAGAAATGTGCATATTATCCATCAAACTG 1255
|||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1207 GATTCAAGTGACGAAAGAGCTCAGGCTGATTGAGAAATCTGCATATTATCCATCAAACAA 1266
Query 1256 CAGG-CA-A-ATGAGCACCATATGACAAGAttttttttGTA 1293
||| || | |||||| |||||||||| |||| ||||||||
Sbjct 1267 CAGATCACAGATGAGCTCCATATGACAGGATTCTTTTTGTA 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5