BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486231
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57780.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2579 0.0
> AT3G57780.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: nucleolar protein gar2-related (TAIR:AT2G42320.2);
Has 3163 Blast hits to 2460 proteins in 357 species: Archae
- 16; Bacteria - 291; Metazoa - 841; Fungi - 335; Plants - 248;
Viruses - 72; Other Eukaryotes - 1360 (source: NCBI BLink).
| chr3:21399766-21402899 REVERSE LENGTH=2237
Length=2237
Score = 2579 bits (1396), Expect = 0.0
Identities = 1687/1824 (92%), Gaps = 34/1824 (2%)
Strand=Plus/Plus
Query 252 TTCAGAGAAAACTGAGAAGGAAGAGAGTGTAAATGGCTTGGCCTGTGATGATGAAGAGGA 311
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||| ||
Sbjct 443 TTCAGAGAAAACTGAGAAGGAAGAGACTATAAATGGCTTGGCTTGTGATGATGAAGATGA 502
Query 312 GGAGGAGAAGGACGAAAGCAAAGACTTTGATGCTATAGCTCATGAAAAGACAGATTCTGT 371
|||||||||||| ||||||||||| || |||||||||||||| || ||||||||||||||
Sbjct 503 GGAGGAGAAGGAAGAAAGCAAAGAATTAGATGCTATAGCTCACGAGAAGACAGATTCTGT 562
Query 372 ATCTTATTCTGAAACTTGCAAAGGTGTCAATGTTGATAAGGCAGTCGAAGTTTGGGATGA 431
||||| | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 563 ATCTTCTCCTGAAACTTGCGAAGGTGTCAATGTTGATAAGGTAGTCGAAGTTTGGGATGA 622
Query 432 TGCTTCAAATGGTGGCCTAAGCGGTGGAAGTGAAAACGAGGAAGGTGATGTTAAAGAGAA 491
|||||| |||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||
Sbjct 623 TGCTTCGAATGGTGGTCTAAGCGGTGGAAGTGAGAACGAGGCAGGTGATGTCAAAGAGAA 682
Query 492 AAGTGAGAAACTTGAGGAGGAAGAAGAAGCATTGAAACAAAAGGTTGAGGA-TTTGGAGA 550
|| |||||| |||||||||| |||||| ||||| |||| |||||| || ||||||||
Sbjct 683 AAATGAGAATTTTGAGGAGGATGAAGAAATGTTGAAGCAAATGGTTGA-GACTTTGGAGA 741
Query 551 CAAGAGTTGAGAAACTTGAAGAAGAGCTAAGAGAAGTTGCAGCGCTCGAGATTTCGCTCT 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 CAAGAGTTGAGAAACTTGAAGAAGAGCTAAGAGAAGTTGCAGCGCTCGAGATTTCGCTCT 801
Query 611 ATTCGGTTGTACCAGACCACTCTAGCTCAGAGCACAAGCTTCACACACCTGCTCGGAGAA 670
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 802 ATTCGGTTGTACCAGACCACTCTAGCTCAGCTCACAAGCTTCACACACCTGCTCGAAGAA 861
Query 671 TTTCAAGACTCTATATCCATGCTTGTAAACATTGGAGTCAAGGAAAGCAAGCAACTGTCG 730
|||||||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 862 TTTCAAGAATCTATATTCATGCTTGTAAACATTGGAGTCAAGGAAAACGAGCAACTGTCG 921
Query 731 CTAGAAACTCCGTGTCTGGTCTCATTTTAGCTGCTAAATCTTGCGGAAATGATGTTTCCA 790
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 922 CTAGAAACTCTGTGTCTGGTCTCATTTTAGCTGCTAAATCTTGCGGAAATGATGTTTCAA 981
Query 791 GGTTGACCTTCTGGTTATCGAACATCATTGCTTTGAGAGAGATCATTTTGCAGGCATTTG 850
||||||||||||||||||||||||||||| || | |||||||||||||||||||| ||||
Sbjct 982 GGTTGACCTTCTGGTTATCGAACATCATTTCTCTCAGAGAGATCATTTTGCAGGCTTTTG 1041
Query 851 GTAAAACTAGTGTTCCTAGACATTTCACAGAGACCTCTGAATCAAATGGGAGTGAAAACA 910
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |
Sbjct 1042 GTAAAACTAGTGTTCCTAGTCATTTCACAGAGACCTCTGCATCAAATGGGAGTGAACATA 1101
Query 911 ATGGTTTAGGGAAGCTAAAAAGGAAGAAGAACCAATGGACTAAGCAGTCAAATGGTTTCA 970
||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1102 ATGTTTTAGGGAAGGTAAGAAGGAAGAAGAACCAATGGACTAAGCAGTCAAATGGTTTTA 1161
Query 971 AGCAGGTTTTAGAAGATTGGCAGGAACCAGAAACCTTCACTGCCGCATTAGAGAAAGTCG 1030
|||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||
Sbjct 1162 AGCAGGTTTTCGAAGATTGGCAGGAATCACAAACCTTCACTGCTGCATTAGAGAAAGTCG 1221
Query 1031 AATTCTGGATTTTCTCTAGAATCGTTGAATCTGTTTGGTGGCAGGTTTTCACTCCTCACA 1090
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1222 AATTCTGGATTTTCTCTAGAATTGTTGAATCTGTTTGGTGGCAGGTTTTCACTCCTCACA 1281
Query 1091 TGCAATCCCCGGAAAATGGCGGTAATACGAATGAGAAACTAATGGGACCTGTCTTGGGAG 1150
||||||| ||||||||||||||||| || || ||| | | | | | ||||||||
Sbjct 1282 TGCAATCACCGGAAAATGGCGGTAAAACAAAGGAG---C-A-T---A--T--CTTGGGAG 1329
Query 1151 ATAATGAGCAAGGAAGCTTTTCAATCAGCCTATGGAAAAACGCTTTCAAAGTTGCTCTAT 1210
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1330 ATATTGAGCAAGGAAGCTTTTCAATCAGCCTATGGAAAAACGCTTTCAAAGTTACACTAT 1389
Query 1211 CGCGGCTCTGTCCTATGCGTGGAGCAG-GGCACGAGTGCGGTTGTTTACCTATCTTGGCT 1269
||||||||||||||||||| ||||| | |||||||||||||||| |||||||||||||||
Sbjct 1390 CGCGGCTCTGTCCTATGCGAGGAGC-GCGGCACGAGTGCGGTTGCTTACCTATCTTGGCT 1448
Query 1270 AAAATGGTAATGGAGAAGTGTATATCTCGAATTGACGTAGCCATGTTCAACGCAATTCTA 1329
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1449 AAAATGGTAATGGAGAAGTGTATAGCTCGAATTGACGTAGCCATGTTCAACGCAATTCTG 1508
Query 1330 CGTGAGTCAGAGCATCAGATTCCCACGGATCCTGTCTCAGATCCTATCCTAGATTCCAAA 1389
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1509 CGTGAGTCAGAGCATCAGATTCCCACGGATCCTGTCTCTGATCCTATCCTTGATTCCAAA 1568
Query 1390 GTTCTGCCTATACTTGCTGGAAACTTAAGCTTTGGATCCGGGGCACAGCTTAAAAATGCG 1449
||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1569 GTTCTGCCTATCCTTTCTGGAAACTTAAGCTTTGGATCCGGTGCACAGCTTAAAAACGCG 1628
Query 1450 ATTGGCAATTGGTCAAGATGCCTCGCTGAAATGTTCTCCATAAACACTAGAGATTCAGTA 1509
||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1629 ATTGGGAATTGGTCTAGATGCCTTGCAGAAATGTTCTCCATAAACACTAGAGATTCAGTT 1688
Query 1510 GAAGAAAATGATTCAATAGAAAGTGAGAAATCTTTCAGTTTGCTAAACGAACTCAGCGAT 1569
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1689 GAAGAAAATGATCCAATAGAAAGTGAGAAATCTTTCAGTTTGCTAAACGAACTCAGTGAT 1748
Query 1570 CTACTTATGCTCCCAAAAGACATGCTTATGGACCGATCCACAAGAGAAGAGGTATGCCCA 1629
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1749 CTACTTATGCTTCCAAAAGACATGCTTATGGACCGATCCACTAGAGAAGAGGTATGTCCA 1808
Query 1630 TCGATAAGTCTTCCGTTGATCAAAAGAATACTCTGTAACTTTACACCTGATGAGTTTTGT 1689
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1809 TCGATAAGTCTTGCGTTGATCAAAAGAATACTCTGCAACTTTACACCTGATGAGTTTTGT 1868
Query 1690 CCTGATGATGTCCCTGGTGCTGTCCTAGAAGAGCTTAATAACGAGAGCATTTCAGAGCAG 1749
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1869 CCTGATGATGTCCCTGGAGCTGTCCTAGAAGAGCTTAATAACGAGAGCATTTCAGAGCAG 1928
Query 1750 AAGGTATCAGGAGTTAGCTTCCCTTACGCAGCTTCTCCTGTTTCATACAATCCTCCATCA 1809
||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1929 AAGTTATCAGGAGTTAGCTTCCCTTACGCAGCTTCTCCTGTTTCGTACACTCCTCCATCA 1988
Query 1810 TCA-CTCAATGTAGCAGAGAAAGTTCCAGAGGTAGGAGATATCTCTAGAATGTCGAGGAA 1868
||| | |||||| |||||| || || | || | || ||||||||||||||||||
Sbjct 1989 TCAAC-CAATGTTGCAGAG---GT---AG-G--AG-ACAT--CTCTAGAATGTCGAGGAA 2035
Query 1869 TGTATCTATGATACAAAGAAAAGGATACACAAGCGATGAGGAGCTGGAGGAACTAGATTC 1928
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2036 TGTGTCTATGATACAAAGAAAAGGATACACAAGCGATGACGAGCTGGAGGAACTGGATTC 2095
Query 1929 TCCTCTTACATCCATCATCGAAAAAGTATCGTTGTCACCAATTTCCGTACAGAGCAGGAA 1988
|||||||||||||||||| ||||| |||||| ||||||||||||||| |||| |||||||
Sbjct 2096 TCCTCTTACATCCATCATTGAAAACGTATCGCTGTCACCAATTTCCGCACAGGGCAGGAA 2155
Query 1989 TGTGAAGCAGGAAACTGAGCATATAGGTGC-AGTGGT-AGCAAATGCAAGATATGAGCTT 2046
||||||||||||| ||||| | ||||| || || ||| | ||| | ||||||||||||||
Sbjct 2156 TGTGAAGCAGGAAGCTGAGAAAATAGG-GCCAGGGGTGA-CAATTTCAAGATATGAGCTT 2213
Query 2047 CTTAGGGAAGCGTGGTCTATGTGA 2070
|||||||||| |||||||||||||
Sbjct 2214 CTTAGGGAAGTGTGGTCTATGTGA 2237
Score = 303 bits (164), Expect = 3e-81
Identities = 204/223 (91%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 1 ATGAAGGGACGAACAA-C--CAACAGTATGCAGTTGAATCGGTCTACGAAGAATGGGAAA 57
||||||||| |||||| | ||||||| | |||| |||||| ||||||||||||||||||
Sbjct 225 ATGAAGGGAAGAACAACCAACAACAGTGTACAGTCGAATCGCTCTACGAAGAATGGGAAA 284
Query 58 AGAGATCAAAAGCCACAGAAGACGAATGGTGCTAAAAGATCTTCAGAGCAAGAAAGACTC 117
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 285 AGAGATCAAAAGCCACAGAAGACAAATGGTGCTAAACGATCTTCAGAGCAAGAAAGACTC 344
Query 118 AAAGCTTTTAAAGAAGAATCTAACGTCCCAGTAGTAGTAGATGATACAACTACACATTCA 177
|||||| ||| || |||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 345 AAAGCTACTAAGGAGGAATCTAATGTCTCAGTAGTAGTAGATGATACAACTACACAATCA 404
Query 178 AAGCTCTCTGATGATGATGATCATGCAGTGAACGAGTCTTCAG 220
|||||||||||||||||||||||||||||||| || |||||||
Sbjct 405 AAGCTCTCTGATGATGATGATCATGCAGTGAATGACTCTTCAG 447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102609913980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5