BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486233
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1694 0.0
AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 252 1e-65
> AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21407789-21411612 REVERSE
LENGTH=1817
Length=1817
Score = 1694 bits (917), Expect = 0.0
Identities = 1090/1170 (93%), Gaps = 26/1170 (2%)
Strand=Plus/Plus
Query 1 agaagaagaagaagaagagagaaTAACTATTCCTTCCTTCTTCGCCAAGTTCTCTGAGAT 60
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1 AGAAGACGAAGAAGAAGAGAGAATAACTA----TTCCTTCTTCGCCAAGTTCTCTGAGCT 56
Query 61 AGAGAAGAAGGAGGGATTTCTTCTGACCGCCATTGTTTCTCACCTTCTTTGCTTGAGATT 120
| ||||||||||||||||||||| ||||||||||||| | |||||||| | ||| |||
Sbjct 57 ATAGAAGAAGGAGGGATTTCTTCAGACCGCCATTGTTGCCCACCTTCTCTCCTTTCTATT 116
Query 121 TTTCGCCGCAATTTGCTCGCTTACTGACAAAAG--------TCAAG--tctctct--ctc 168
|||||||||| ||| |||||||||||||||||| ||||| ||||||| |||
Sbjct 117 TTTCGCCGCATTTTACTCGCTTACTGACAAAAGTCTTCTACTCAAGTCTCTCTCTCGCTC 176
Query 169 tctTTGGAGGCTCAATTAGGGTTTTGTTGCT-GTGAGATTTGATTACGCAAACTGCTGAA 227
||||||||||||||||||||||||||||| | ||||||||||||||| |||| |||||||
Sbjct 177 TCTTTGGAGGCTCAATTAGGGTTTTGTTG-TCGTGAGATTTGATTACACAAATTGCTGAA 235
Query 228 TTTGGTTTCGATTATTGGCGTGAGACGGTGTTGTTTTTGAAGATTTCCAGTGAGTTTCTG 287
|||||||||||||||| | || | | ||||||| |||||||||||||||||||| |
Sbjct 236 TTTGGTTTCGATTATT-G-GT-----GTTATTGTTTTCGAAGATTTCCAGTGAGTTTCCG 288
Query 288 TTTATGGATCTGACTGGAGGATTTGGAGCTAGATCCGGCGGTGTTGGACCGTGCCGGGAA 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TTTATGGATCTGACTGGAGGATTTGGAGCTAGATCCGGCGGTGTTGGACCGTGCCGGGAA 348
Query 348 GCAATAGGGCTTGAATCGCTACATCTCGGTGACGAATTTCGGCAACTGGTGACAACGTTA 407
||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 349 CCAATAGGCCTTGAATCGCTACATCTCGGTGACGAATTTCGGCAACTAGTGACGACTTTA 408
Query 408 CCTCCTGAGAACGCCGGCGGTTCTTTCACGGCTTTGCTTGAGCTTCCGCCTACACAAGCA 467
||||| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 409 CCTCCCGAGAACCCCGGCGGTTCGTTCACGGCTTTGCTTGAGCTTCCACCTACACAAGCA 468
Query 468 GTGGAGCTTCTTCATTTTACTGATTCTTCGTCTTCTCAAGTGGCGGCTGTGACAGGAATC 527
||||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| |||
Sbjct 469 GTGGAGCTTCTCCATTTCACTGATTCTTCGTCTTCTCAACAAGCGGCAGTGACAGGGATC 528
Query 528 GGTGGAGAGATTGCTCCACCGCTTCACTCTCTCGGTGGGACATTGGCTTTTCCTTCTAAC 587
|||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 529 GGTGGAGAGATTCCTCCGCCGCTTCACTCTTTCGGTGGGACATTGGCTTTTCCTTCTAAC 588
Query 588 TCAGTTCTCATGGAGCGAGCAGCTCGGTTCTCGGTTATTGCCACTGAACAACAAAACGGA 647
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 589 TCAGTTCTCATGGAGCGAGCAGCTCGTTTCTCGGTGATTGCCACTGAGCAACAAAACGGA 648
Query 648 AATATCTCCGGGGAGACTCCGACGAGCTCGGTACCTTCCAATTCCAGCGCTAATCTCGAC 707
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 649 AATATCTCCGGGGAGACTCCGACGAGCTCTGTACCTTCCAATTCAAGTGCTAATCTCGAC 708
Query 708 ATAGTCAAGACCGAGCCTGCTGAGACCGATTCATCTCAGCGGTTGATTTCTGATTCAGCG 767
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AGAGTCAAGACGGAGCCTGCTGAGACCGATTCATCTCAGCGGTTGATTTCTGATTCAGCG 768
Query 768 ATTGAGAATCAAATCCCTTGCCCTAGCCAGAACAATCGAAATGGGAAGAGGAAAGATTTC 827
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 769 ATTGAGAATCAAATCCCTTGCCCTAACCAGAACAATCGAAATGGGAAGAGGAAAGATTTC 828
Query 828 GAAAAGAAGGTTAAAAGCTCGACGAAGAAGAACAAAAGCTCCGAAGAGAACGAGAAGCTG 887
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 829 GAAAAGAAGGGTAAAAGCTCGACGAAGAAGAACAAAAGCTCTGAAGAGAACGAGAAGCTG 888
Query 888 CCATATGTTCACGTTAGAGCTCGTCGTGGTCAAGCAACCGATAGCCATAGCTTAGCAGAA 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCATATGTTCACGTTAGAGCTCGTCGTGGTCAAGCAACCGATAGCCATAGCTTAGCAGAA 948
Query 948 CGAGCAAGAAGAGAGAAGATAAATGCACGAATGAAGCTGCTACAGGAACTGGTCCCAGGC 1007
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 949 CGAGCAAGAAGAGAGAAGATAAATGCACGAATGAAGCTGTTACAGGAACTGGTCCCAGGC 1008
Query 1008 TGTGATAAGGGGACAGATTTTGGTGGAAAGATCAAGATCAAAGTGTGTTTTGGGGTCCAT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TGTGATAAGGGGACAGATTTTGGTGGAAAGATCAAGATCAAAGTGTGTTTTGGGGTCCAT 1068
Query 1068 CTTTTGATGATAAGTGGGAAAAAAGCTGTAAACTTTCTATGGAAGGTGAGCTGTGAGGAC 1127
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 1069 CTTTTGATGATAAGTGGGAAAAAAGTTGCAATCTTTCTATGGAAGGTGAGCTGTGAGGAC 1128
Query 1128 TTGATTGATTGTTCCTTTAACCCCC-TAGG 1156
||||||||||||||||||| ||||| ||||
Sbjct 1129 TTGATTGATTGTTCCTTTAGCCCCCCTAGG 1158
Score = 922 bits (499), Expect = 0.0
Identities = 612/661 (93%), Gaps = 30/661 (5%)
Strand=Plus/Plus
Query 1197 ATTCAAGGTACCGCGCTGGTGCTGGATGAAATCATTAACCATGTCCAGTCATTACAACGT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 ATTCAAGGTACCGCGCTGGTGCTGGATGAAATCATTAACCATGTCCAGTCATTACAACGT 1218
Query 1257 CAAGTGGAGATGCTATCAATGAGACTTGCTGCGGTAAACCCCAGAATCGACTTCAATCTC 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 CAAGTGGAGATGCTATCAATGAGACTTGCTGCGGTAAACCCCAGAATCGACTTCAATCTC 1278
Query 1317 GACACCATATTGGCTTCAGAAAATGGTTCTTTAATGGATGGGAGTTTCAATGGCACACCA 1376
||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||||
Sbjct 1279 GACACCATATTGGCTTCAGAAAACGGTTCTTTAATGGATGGGAGCTTCAATGCCGCACCA 1338
Query 1377 ATGCAGCTTGCTTGGCCTCATCAAGCCATTGAGACCGAACAGTCCTTTCATCACCGGCAA 1436
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1339 ATGCAGCTTGCTTGGCCTCAGCAAGCCATTGAGACCGAACAGTCCTTTCATCACCGGCAA 1398
Query 1437 CTGCCACCACCACCAACACAACAGTGGCCTTTTGACGGCTTGAACCAGCCGGTATGGGGA 1496
|||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1399 CTGCAACAACCACCAACACAACAATGGCCTTTTGACGGCTTGAACCAGCCGGTATGGGGA 1458
Query 1497 AGAGAAGAGGATCAAGCTGATGGCAATGATAACAGCAATTTGATGGCGGTTTCTGAAAAT 1556
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1459 AGAGAAGAGGATCAAGCTCATGGCAATGATAACAGCAATTTGATGGCAGTTTCTGAAAAT 1518
Query 1557 GTAATGGTGGCTTCTGCTAATTTGCACCCAAATCAGGTCAAAATGGAGCTGTAAGTTGGG 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 GTAATGGTGGCTTCTGCTAATTTGCACCCAAATCAGGTCAAAATGGAGCTGTAAGTTGGG 1578
Query 1617 AAAACAGTAGAGATCATGAATGTGtatatatatcgtataagcccgtttctctatatataa 1676
||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct 1579 AAAACGGTAGAGATCATGAATGTGTATATACATCGTATAAGCTCGTTTCTCTCTATATAA 1638
Query 1677 ttataatcataaatatataagcattagatatCTGTTAAGAAGGTATCAGTCATTTGATTC 1736
|||||||||||||||| | || | | |||||||||||||||||||||||||||||
Sbjct 1639 ATATAATCATAAATATA---G-AT-A--T--CTGTTAAGAAGGTATCAGTCATTTGATTC 1689
Query 1737 AGAGAGACAAAACTGGTAT-A------C-----C----A---GATTTCCACAATGTAGAA 1777
|||||||||| |||||||| | | | | |||||| |||||||||||
Sbjct 1690 AGAGAGACAACACTGGTATGATTGTTTCTTATTCTTGTACCAGATTTCGACAATGTAGAA 1749
Query 1778 TTTAGTAGAATATGATCATTTTGATCTTGTTATATAT--CTTACTAATAATAAATAGAGA 1835
|||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1750 TTTAGTAGGATATGATCATTTTGATCTCGTTATATATATCTTACTAATAATAAATAGAGA 1809
Query 1836 T 1836
|
Sbjct 1810 T 1810
> AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17621156-17624841 FORWARD
LENGTH=1576
Length=1576
Score = 252 bits (136), Expect = 1e-65
Identities = 186/210 (89%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 809 TGGGAAGAGGAAAGATTTCGAAAAGAAGGTTAAAAGCTCGACGAAGAAGAACAAAAGCTC 868
||| || |||||||| ||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 848 TGGAAAAAGGAAAGAACGCGAGAAGAAGGTCAAAAGCTCGACGAAGAAGAACAAGAGCTC 907
Query 869 CGAAGAGAAC-GAGAAGCTGCCATATGTTCACGTTAGAGCTCGTCGTGGTCAAGCAACCG 927
|| ||| | || ||| ||||||||||||| || |||||||||||||||||||| || |
Sbjct 908 CGTGGAG-TCAGACAAGTTGCCATATGTTCATGTCAGAGCTCGTCGTGGTCAAGCTACTG 966
Query 928 ATAGCCATAGCTTAGCAGA-ACGAGCAAGAAGAGAGAAGATAAATGCACGAATGAAGCTG 986
||| ||||||||||||||| | |||||||||| ||||||||||| |||||||||||||||
Sbjct 967 ATAACCATAGCTTAGCAGAGA-GAGCAAGAAGGGAGAAGATAAACGCACGAATGAAGCTG 1025
Query 987 CTACAGGAACTGGTCCCAGGCTGTGATAAG 1016
||||||||||||||||||||||||||||||
Sbjct 1026 CTACAGGAACTGGTCCCAGGCTGTGATAAG 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90862986450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5