BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486235
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57810.2 | Symbols: | Cysteine proteinases superfamily prot... 1709 0.0
AT2G01973.1 | Symbols: | pseudogene of OTU-like cysteine prote... 340 2e-92
> AT3G57810.2 | Symbols: | Cysteine proteinases superfamily protein
| chr3:21415784-21417948 FORWARD LENGTH=1331
Length=1331
Score = 1709 bits (925), Expect = 0.0
Identities = 1200/1326 (90%), Gaps = 46/1326 (3%)
Strand=Plus/Plus
Query 1 AAGCTTCTCGACTCGTTTTTGTTTGTTTCATAGCATCTCGTCGGTTCAACAAGACCTTGC 60
||||||||||| | || || ||||||| |||| | |||||||| ||||||||||||||
Sbjct 1 AAGCTTCTCGA--C-TTGTT-ATTGTTTCGTAGC-T-TCGTCGGTCCAACAAGACCTTGC 54
Query 61 GCTAGAAGAAGAACAATTTCAGTTTTGTTTTGTCCAATTCTCACCT-----CGTACAGTG 115
||| ||||||||| |||| | |||||||||| |||||||||||| || |||| |
Sbjct 55 GCT---AGAAGAACAGTTTCGGCTTTGTTTTGTTCAATTCTCACCTCACCCCGGACAGAG 111
Query 116 ACC-AAACAACGGTTTCTTTGTTGCTTTTGTC-GG--A--A-A-TTCAG------AAACA 161
|| |||||||||||| ||| |||| |||||| || | | | || || |||||
Sbjct 112 TCCAAAACAACGGTTTATTTCTTGCGTTTGTCGGGAAATCAGAGTTGAGTATAATAAACA 171
Query 162 CCCTTGACAACATTCTTTGCTTCTCCACCTTGGTATCTGAAATTGGGAGACTCTTATTAG 221
||||| || ||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 172 CCCTTCACGACATTCTTTGCTTGTCCACCTTGGTATCTGAAATTGGGGGACTCTTATT-- 229
Query 222 AAAAAAGATATGATGATTTGTTACTCTCCAATTACAACATGTTCTAGGAATGCTATCAAT 281
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 230 ATAAAAGATATGATGATTTGTTACTCTCCAATTACAACATGTTCTAGGAATGCTATCAGT 289
Query 282 ATCAAGGGGCATTTAGGCACTCACCTCTACGGCGTTGTGACTCAAGGATCATATAAATTC 341
|||||| ||||||||||| ||| |||||||||||||||| |||| ||||||| |||||||
Sbjct 290 ATCAAGAGGCATTTAGGCTCTCGCCTCTACGGCGTTGTGGCTCACGGATCATCTAAATTC 349
Query 342 TCCTGTC-ACAGTCTTTTATTAGGACTTTCTAGAAGACATTACACCGGTTTTCGCGTATC 400
||||| | |||||||||||| ||||||||| ||||||||||| ||||||||||| |||||
Sbjct 350 TCCTG-CTACAGTCTTTTATCAGGACTTTCAAGAAGACATTATACCGGTTTTCGTGTATC 408
Query 401 GGTCTCTAATAGACCTTCTAGTTGGCACGATAAA--A-------GG-C--TATTGATCAA 448
|||||||||||||||||||||||||||||||||| | || | ||||||||||
Sbjct 409 GGTCTCTAATAGACCTTCTAGTTGGCACGATAAAGGACTTTTTGGGTCAGTATTGATCAA 468
Query 449 TCGATCAACCGTTGGTCCTAAGGAAAAGCTTGAAGTTTCTTTCTTGTCCCCTGATGCTAA 508
|||| |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 469 TCGACCAACTGTTGCTCCTAAGGAAAAGCTTGAAGTTTCTTTCTTGTCCCCTGAGGCTAA 528
Query 509 AATGAAATGCTCCAAGATAGAATCCAACATGAGAAATCTCTATTGGTATTCAAGATTTGC 568
||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 529 TATGAAATGCTCGAAGATAGAATCTAACATGAGAAATCTCTATTGTTATTCAAGATTTGC 588
Query 569 TTATACAGGTGTGATTGTTAGCTTGCTTGTTTGTTATTCTTCAACTTCCCAATCAGCTTA 628
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 589 ATATACAGGTGTGATTGTTAGCTTGCTTGTTTGTTATTCTTCGACTTCCCAATCAGCGTA 648
Query 629 CGCAGATGCTTCAAGGGATAAAGATGCTAACAACGTGCATAATCATTCGTCTCATGGTAA 688
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 649 CGCAGATTCTTCAAGGGATAAAGATGCTAACAACGTGCATCATCATTCGTCTGATGGTAA 708
Query 689 ATTCCACAATGGGAAAAGAGTCTACACTGATTACTCTATCATTGGTATTCCGGGGGATGG 748
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 709 ATTCCACAATGGGAAAAGAGTTTATACTGATTACTCTATCATTGGTATTCCGGGGGATGG 768
Query 749 TAGATGCTTGTTTCGTTCTGTAGTTCACGGATTTTACTTACGCTCTGGAAAACTGGCTCC 808
||||| |||||||||||||||| ||||||||| | |||||||||||| ||||| |||||
Sbjct 769 CAGATGTTTGTTTCGTTCTGTAGCTCACGGATTCTGCTTACGCTCTGGGAAACTAGCTCC 828
Query 809 AGGCGAGAAGATGCAGAGAGAACTTGCTGATGAATTACGTACCAGGGTTGCTGATGAGTT 868
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 829 AGGCGAGAAGATGCAGAGAGAACTCGCTGACGAATTACGTACCAGGGTTGCTGATGAGTT 888
Query 869 TATCAAAAGAAGACAGGAAACAGAATGGTTTGTGGAAGGAGATTTCGATTCATACGTCAG 928
|||| ||||||||||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 889 TATCCAAAGAAGACAGGAAACAGAATGGTTCGTGGAAGGAGATTTCGACACCTACGTCAG 948
Query 929 ACAAATTCGGGAGCCACACGTGTGGGGAGGTGAACCTGAACTCTTCATGGCTTCACACGT 988
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 ACAAATTCGGGATCCACACGTGTGGGGAGGTGAACCTGAACTCTTCATGGCTTCACACGT 1008
Query 989 TCTCCAGATGCCAATCACAGTGTATATGAAGGACGAGAAAGCTGGAGGATTGATATCTAT 1048
|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| |||
Sbjct 1009 TCTCCAGATGCCAATCACAGTGTATATGAAAGACGATAAAGCTGGAGGACTGATAAGTAT 1068
Query 1049 TGCGGAATATGGTCAAGAATATGGTAAAGACGACCCAATCCGAGTCCTATACCATGGTTT 1108
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TGCAGAATATGGTCAAGAATACGGTAAAGACGACCCAATCCGAGTCCTATACCATGGTTT 1128
Query 1109 TGGTCATTACGATGCCCTCTTGATTCACGAAAGTAAAGCTTCAATTCCAAAATCTAAACT 1168
|||||||||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||
Sbjct 1129 TGGTCATTACGATGCCCTTTTGCTTCACGAGAGTAAAGCTTCGATTCCAAAATCTAAACT 1188
Query 1169 TTAGTAAATTTAGTTTTGCATCTTTGACTTTTGTCAGGTGATGATGATGTTTTTGTCT-C 1227
|||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 1189 TTAGTATACTTAGTTTTGCATCTTTGACTTTTGTCAGGTGTTGATGATGTTTTTGTTTAC 1248
Query 1228 TGACACAACCACAATCTATATGCCTTGTAGAATGTAACCtttttttACCTTTTAATTTGA 1287
|||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1249 TGACACAACCACTATCTGTATGCCTTGTAGAATGTAACCTTTTTTTACCTTTTACTTTGA 1308
Query 1288 A-AAAA 1292
| ||||
Sbjct 1309 ATAAAA 1314
> AT2G01973.1 | Symbols: | pseudogene of OTU-like cysteine protease
family protein | chr2:455659-456088 REVERSE LENGTH=430
Length=430
Score = 340 bits (184), Expect = 2e-92
Identities = 309/367 (84%), Gaps = 18/367 (5%)
Strand=Plus/Plus
Query 510 ATGAAATGCTCCAAGATAGAATCCAACATGAGA-AATCTCTATTGGTATTCAAGATTTGC 568
||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 1 ATGAAATGCTCAAAGATAGAATCCAACAT-AAAGAATCTCTATTGGTATTCAAGATTTGC 59
Query 569 TTATACAGGT-GTGATTGTTAGCTT-GCTT-GTTTGTTATTCTTCAACTTCCCAATCAGC 625
||||| || | ||||||||||| || | || ||||||||||||| | || |||||||||
Sbjct 60 TTATAGAG-TAGTGATTGTTAG-TTAG-TTAGTTTGTTATTCTTTGATTTTCCAATCAGC 116
Query 626 TTACGCAGATGCTTCAAGGGATAAAGATGCTAACAACGTGCATAATCATTCGTCTCATGG 685
||||| |||| |||||| | || ||||||||||||| |||||||| ||| |||| ||||
Sbjct 117 TTACGAAGATTTTTCAAGAG-TAGAGATGCTAACAACATGCATAATAATTTGTCTAATGG 175
Query 686 TAAATTCCACAATGGGAAAAGAGTCTACACTGATTACTCTATCATTGGTA-TTCCGGGGG 744
||||||| ||||| |||||||||| |||| |||||||||||||||| ||| ||| ||||
Sbjct 176 TAAATTCTACAATAGGAAAAGAGTTTACATTGATTACTCTATCATTAGTAGTTCAGGGG- 234
Query 745 ATGGTAGATGCTTGTTTCGTTCTGTAGTTCACGGATTTTACTTACGCTCTGGAAAACTGG 804
|| ||||||| |||||| ||||| | | || || | ||| |||||||||||||||
Sbjct 235 ATAGTAGATGTTTGTTTTGTTCT--A----A-GGCTTATGTTTATGCTCTGGAAAACTGG 287
Query 805 CTCCAGGCGAGAAGATGCAGAGAGAACTTGCTGATGAATTACGTACCAGGGTTGCTGATG 864
||||||||||||||| ||||||||||| | ||||| ||||| || || ||| |||||||
Sbjct 288 TTCCAGGCGAGAAGATTCAGAGAGAACTCGTTGATGGATTACATATCATGGTCGCTGATG 347
Query 865 AGTTTAT 871
||| |||
Sbjct 348 AGTGTAT 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63553889970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5