BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486239
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57870.1 | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | su... 1435 0.0
AT5G02244.1 | Symbols: | Pseudogene of AT3G57870; AHUS5 (SUMO ... 422 4e-117
> AT3G57870.1 | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 |
sumo conjugation enzyme 1 | chr3:21428496-21430200 REVERSE LENGTH=908
Length=908
Score = 1435 bits (777), Expect = 0.0
Identities = 860/898 (96%), Gaps = 14/898 (2%)
Strand=Plus/Plus
Query 1 GATagagattggagagcgagcgagacaaatcagaagagagagagagagattgagatattg 60
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1 GATAGAGATTGGAGAGCGAGCGAGACAAATC-----AGA-AGAGAGAGATTTAGATATTG 54
Query 61 tagagtgagattct-aa-agagagagacagagagatATGGCTAGTGGAATCGCTCGTGGT 118
|||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 55 TAGAGTGAGATTCTAAAGAGAGAGAGAGAGAGAGATATGGCTAGTGGAATCGCTCGTGGT 114
Query 119 CGTTTAGCTGAAGAGAGGAAATCGTGGAGGAAGAATCATCCTCATGGTTTTGTGGCAAAG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CGTTTAGCTGAAGAGAGGAAATCGTGGAGGAAGAATCATCCTCATGGTTTTGTGGCAAAG 174
Query 179 CCGGAGACGGGGCAGGATGGAACTGTGAATCTAATGGTGTGGCATTGCACTATACCTGGT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CCGGAGACGGGGCAGGATGGAACTGTGAATCTAATGGTGTGGCATTGCACTATACCTGGT 234
Query 239 AAAGCTGGGACTGATTGGGAAGGTGGATTCTTCCCATTAACGATGCACTTCAGTGAGGAT 298
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 235 AAAGCTGGGACTGATTGGGAAGGTGGATTCTTTCCATTAACGATGCACTTCAGTGAGGAT 294
Query 299 TATCCGAGCAAACCTCCGAAATGCAAATTCCCACAAGGGTTTTTCCACCCTAATGTCTAT 358
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 295 TATCCGAGCAAACCTCCGAAATGTAAATTTCCACAAGGGTTTTTCCACCCTAATGTCTAT 354
Query 359 CCATCTGGAACTGTCTGTCTCTCCATCCTTAACGAGGATTACGGGTGGAGACCAGCCATC 418
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 355 CCATCTGGAACTGTCTGTCTCTCTATCCTTAACGAGGATTATGGATGGAGACCAGCCATC 414
Query 419 ACCGTGAAGCAGATTCTTGTTGGTATTCAGGATTTACTTGACACACCTAATCCCGCTGAC 478
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 415 ACCGTGAAGCAGATTCTTGTTGGTATTCAGGATTTACTTGACACACCGAATCCCGCTGAC 474
Query 479 CCTGCACAGACTGATGGTTATCATCTTTTCTGTCAGGATCCAGTTGAGTACAAGAAAAGG 538
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 475 CCTGCACAGACAGATGGTTATCATCTCTTCTGTCAGGATCCAGTTGAGTACAAGAAAAGG 534
Query 539 GTGAAGCTGCAGTCCAAGCAGTATCCTGCTCTTGTCTAAAACCTCAAAAGAGAGAACGCA 598
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 535 GTGAAGCTGCAGTCCAAGCAGTATCCTGCTCTTGTCTAAAACCTCAAAAAAGAGAACGCA 594
Query 599 CCAAAACTGATGACATGCTCTGAATATTTTCTCGTCTTGTGTCATTGTGTTTAGATGTCA 658
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 595 CCAAAACTGATGACAAGCTCTGAATATTTTCTCGTCTTGTGTCATTATGTTTAGATGTCA 654
Query 659 TTGGGTGATTGAAAACTCCTCATTTTGGCACCTTAAGACACTGGAATCTATTTATTTGCG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 655 TTGGGTGATTGAAAACTCCTCATTTTGGCACCTTAAGACACTGGAATCTATTTATTTTCG 714
Query 719 AAGAAACTCAGTTCtttttttCTCTATTTAACTGTTAATATTCTTGGTACTGATTCAGTT 778
|| ||| | | ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 715 AAAAAAAAC--T-CTTCTTT-CTCTATTTAACTGTTAATATTCTTGGTACTGATTCAGTT 770
Query 779 GGTGTTGCTTCTATATAATACATAACTATGTTCTCTGGTCGTTCATGAGTGTTGTCCAAA 838
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 771 GGTGTTGCTTCTATATAATACATAATTATGTTCTCTGGTCGTTCATGAGTGTTGTCCAAA 830
Query 839 TTCTACCAAGTTAAGTATATGAAGTCTTCATTCCAAATAGTAACGAATCTTAGTTGTG 896
|||||| |||| || ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 831 TTCTACTAAGTGAA--ATATGAAGTCTTCATTCCATAGAGTAACGAATCTTAGTTGTG 886
> AT5G02244.1 | Symbols: | Pseudogene of AT3G57870; AHUS5 (SUMO
CONJUGATION ENZYME 1); ubiquitin-protein ligase | chr5:453814-454294
FORWARD LENGTH=324
Length=324
Score = 422 bits (228), Expect = 4e-117
Identities = 306/339 (90%), Gaps = 24/339 (7%)
Strand=Plus/Plus
Query 248 ACTGATTGGGAAGGTGGATTCTTCCCATTAACGATGCACTTCAGTGAGGATTATCCGAGC 307
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTGATTGGGAAGGTGGATTCTTTCCATTAACGATGCACTTCAGTGAGGATTATCCGAGC 60
Query 308 AAACCTCCGAAATGCAAATTCCCACAAGGGTTTTTCCACCCTAATGTCTATCCATCTGGA 367
|||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 61 AAACCTCCGAAATGCAAATT----C----------CCACCCTAATGTCTATCCATCTGGA 106
Query 368 ACTGTCTGTCTCTCCATCCTTAACGAGGATTACGGGTGGAGACCAGCCATCACCGTGAAG 427
|||||||||||||| |||||||||||||||||| | | |||||||||| |||||||||
Sbjct 107 ACTGTCTGTCTCTCTATCCTTAACGAGGATTAC-GTTATTGACCAGCCATTACCGTGAAG 165
Query 428 CAGATTCTTGTTGGTATTCAGGATTTACTTGACACACCTAATCCCGCTGACCCTGCACAG 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CAGATTCTTGTTGGTATTCAGGATTTACTTGACACACCTAATCCCGCTGACCCTGCACAG 225
Query 488 ACTGATGGTTATCATCTTTTCTGTCAG-----G-AT---CCAGTTGAGTACAAGAAAAGG 538
|| ||||||||||||| |||||||||| | || |||||||||||||||||||||
Sbjct 226 ACCGATGGTTATCATCATTTCTGTCAGATTTTGCATGATCCAGTTGAGTACAAGAAAAGG 285
Query 539 GTGAAGCTGCAGTCCAAGCAGTATCCTGCTCTTGTCTAA 577
|||||||||||||||||||||||||||||||||||||||
Sbjct 286 GTGAAGCTGCAGTCCAAGCAGTATCCTGCTCTTGTCTAA 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43753942037
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5