BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486242
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57910.1 | Symbols: | D111/G-patch domain-containing protei... 1666 0.0
> AT3G57910.1 | Symbols: | D111/G-patch domain-containing protein
| chr3:21442748-21444312 FORWARD LENGTH=1165
Length=1165
Score = 1666 bits (902), Expect = 0.0
Identities = 1031/1091 (95%), Gaps = 17/1091 (2%)
Strand=Plus/Plus
Query 1 CGCTAACCCAAGCTCCGTCGGCAATGGCAGAATCGACGAGAAATCTGACTGGACTTGGAG 60
||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 CGCGAACGCAAGCTCCGTCGGCAATGGCAGAATCGACGAGAAATCTGACTGGGCTTGGAG 60
Query 61 GAGAAGCAGCGAAAGAAGAAGATGATGACTACATGGGAGACCTTTCTCAGTTTATTCCTC 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 GAGAAGCAGCGAAAGAAGAAGATGATGAGTACATGGGAGACCTTTCTCAGTTTATTCCTC 120
Query 121 CGGAACTTACCCAGACCTCCAAAAGAAAGGAATCTGAAAAGAAAACTGTAATCGTTGAAC 180
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 121 AGGAACTTAGCCAGACCTCCAAAAGAAAGGAATCTGAGAAGAAAACTGTAATCGTAGAAC 180
Query 181 CATCACGGAAGAAGTTAAAGAATCTCAATTGGCACGAGAGGCGAAGATTGGAGAAAGAGA 240
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 181 CATCACGGAAGAAGTTAAAAAATCTCAATTGGCACGAGAGACGAAGATTGGAGAAAGAGA 240
Query 241 GGAAACAGATAGAAGAGGATGAGCAGACATTGGCTCGTATTGTAGACACTCCTATTGGAG 300
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 241 GGAAACAGATAGAAGAAGATGAGCAGACATTGGCTCGTATAGTAGACACTCCAATAGGAG 300
Query 301 AGTCTAACATAGGGTTTAAGCTATTGAAGCAAATGGGTTACAAGCCAGGTTCTGCTCTTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGTCTAACATAGGGTTTAAGCTATTGAAGCAAATGGGTTACAAGCCAGGTTCTGCTCTTG 360
Query 361 GTAAAGAAGGCTCTGGTAGGGCTGAGCCAGTGACTATGGATATTCGAAGATCGAGGGCCG 420
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 GTAAACAAGGCTCTGGTAGAGCTGAGCCAGTGACTATGGATATTCGAAGATCGAGAGCCG 420
Query 421 GTGTGggaagagaggatccacataaggagaagaagaaaaaagaggagattgaggctgaga 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 GTGTGGGAAGAGAGGATCCACATAAGGAGAAGAAGAAAAAGGAGGAGATTGAGGCTGAGA 480
Query 481 ttgagaagagaaaggtggaggagatgttggaggaTTTTGGGTCTAGACAGAAGTCTCAAT 540
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGAGAAGAGAAAAGTGGATGAGATGTTGGAGGATTTTGGGTCTAGACAGAAGTCTCAAT 540
Query 541 GGCGTAAGAAGAGAGTTTTGATTAACTTTAGGAAGGCTAAGGCGGCTCTTGATCAACTTG 600
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 GGCGTAAGAAAAGAGTTTTGATTAACTTTAGGAAGGCTAAGGCTGCTCTTGATCAACTTG 600
Query 601 AGAACGTAGAAGTTGTTCCggagaagaaaaacgaggaagatgaggatggtaagcctgatg 660
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 601 AGAATGTAGAAGTTGTTCCGGAGAAGAAAAATGAGGAAGATGAAGATGGTAAGCCTGATG 660
Query 661 aagaagaggaagaagaagaggagatcactgaagaggatTTGCAAGAAATATTAATGAAAC 720
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGAAGAGGAAGAAGAGGAGGAGATCACTGAAGAGGATTTGCAAGAAATATTAATGAAAC 720
Query 721 TGAGAGATGAACATTGGTATTGCCCTTTCTGCGGGTTCCAGTATGAAACGACTGAAGCCC 780
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 721 TGAGAGCTGAACATTGGTATTGCCTTTTCTGCGGGTTCCAGTATGAAACGACTGAAGCTC 780
Query 781 TTCTATCCAATTGTCCTGGCGTAAATGAGGATGATCACTAGATAAGTCACAGTAGTATGG 840
|||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 781 TTCTATCCAACTGTCCTGGCGTAAATGAGGATGATCACTAGATAAGCCACACTAGTATGG 840
Query 841 AAGCACACAAACACAAT----GTCTGCAGAAGCTTCAGGTTGAAAATTACCTGATGTGGC 896
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 841 AAGCACACAAACACAATCCATGTCTGCAGAAGCTTCAGGTTGAAAATTTCCTGATGTGGC 900
Query 897 TGAAGAGGAAGCAAGATACAGAAGAAAGACTGTGTTTGCGGGTGAGGTACACACTTTAGA 956
|||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||
Sbjct 901 TGAAGAGGAAGCAAGATACAGAAGGAAGACTGTGTTTGCAGTTGAGGTACACACTT-AGA 959
Query 957 AAATTTTAAGGACTTGCTAATTCCCATATTACTCTTGCTTTTAA-TAGATAGTAGGATGA 1015
| | |||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 960 A--TCTTAAGGACTTGCTAATTCTCAT---------GCTTTTAAATAGATAGTAGGATGA 1008
Query 1016 TTAAAGCATGTGGAACTCTGATTTGATAAAACAATATATTGATTATGATGTTGATGTTTC 1075
| ||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 1009 TAAAAGCATGTGGAACTCTGATTTGATAAGACAATATATTGATGATAATGTTGATGTTTC 1068
Query 1076 AATTTGATCTC 1086
|||||||||||
Sbjct 1069 AATTTGATCTC 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54618192960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5