BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486243
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57920.1 | Symbols: SPL15 | squamosa promoter binding protei... 1681 0.0
> AT3G57920.1 | Symbols: SPL15 | squamosa promoter binding protein-like
15 | chr3:21444321-21446035 REVERSE LENGTH=1377
Length=1377
Score = 1681 bits (910), Expect = 0.0
Identities = 1148/1256 (91%), Gaps = 44/1256 (4%)
Strand=Plus/Plus
Query 1 TAAAAGATAGCAACATCTAAAATAAGCAAAACCACATTTTCGTTCCTCTCTTCTCCTCTG 60
||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |
Sbjct 28 TAAAAGATAGCAACATCTAAAATCTGCAAAACCACATTTTCTTTCCTCTATTCTCCTCCG 87
Query 61 T-C---C--TTT-C-----T-A-T--TT---CA-AAAGAGA--GATGAGCAGAAGCATAT 98
| | | ||| | | | | || | ||||||| ||||||||||||||| |
Sbjct 88 TCCTTACTATTTCCAGAGTTCAGTACTTAGAAAGAAAGAGAGTGATGAGCAGAAGCATCT 147
Query 99 CTTTCACTGTCTGAGTAAGAGGAAACC-AAACCATAATGGAGTTGTTAATGGGCTCGGGT 157
||||| |||||||||||||||||| || ||||||||||||||||||||||| | ||||||
Sbjct 148 CTTTCTCTGTCTGAGTAAGAGGAAGCCAAAACCATAATGGAGTTGTTAATGTGTTCGGGT 207
Query 158 CAGGCAGAGTCAGGTGGTTCTTCTTCCACCGAGTCTTCTTCACTCAGTGGTGGACTCAGG 217
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 CAGGCCGAGTCAGGTGGTTCTTCTTCCACCGAGTCTTCTTCACTCAGTGGTGGACTCAGG 267
Query 218 TTTGGTCAGAAGATCTACTTCGAGGATGGATCCGGATCCGGAAGCAAGAACCGGGTCAAT 277
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 268 TTTGGTCAGAAGATCTACTTCGAGGATGGATCCGGATCCAGAAGCAAGAACCGGGTCAAT 327
Query 278 ACGGGTCGTAAGTCGACAATGACGGCGAGGTGCCAAGTGGAAGGTTGTAGAACGGATCTA 337
|| | |||||||||| | | ||||||||||||||||||||||||||||||| |||||||
Sbjct 328 ACCGTTCGTAAGTCGTCTACCACGGCGAGGTGCCAAGTGGAAGGTTGTAGAATGGATCTA 387
Query 338 AGCAATGTAAAAGCTTATTACTCAAGACACAAAGTTTGTTGCATTCACTCTAAATCATCT 397
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 388 AGCAATGTTAAAGCTTATTACTCGAGACACAAAGTTTGTTGCATTCACTCTAAATCATCT 447
Query 398 AAAGTCATTGTCTCTGGTCTTCATCAAAGGTTTTGCCAACAATGTAGCAGGTTTCACCAG 457
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 448 AAAGTCATTGTCTCTGGTCTTCATCAAAGGTTTTGTCAACAATGTAGCAGGTTTCACCAG 507
Query 458 CTTTCTGAGTTTGACTTAGAGAAAAGAAGTTGTCGCAGACGACTCGCTTGTCATAACGAA 517
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 508 CTTTCTGAGTTTGACTTGGAGAAAAGAAGTTGTCGCAGAAGACTCGCTTGTCATAACGAA 567
Query 518 CGTCGAAGAAAGCCACAACCCACAACGTCTCTTTTCACTTCTCGTTACACTCGAATCGCT 577
|| |||||||| ||||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 568 CGACGAAGAAAACCACAACCCACAACGGCTCTTTTCACTTCTCATTACTCTCGAATCGCT 627
Query 578 CCATCTCTTTACGGAAACCCCAATGCTGCAATGATTAAAAGCGTTTTGGGAGATCCTACG 637
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 CCATCTCTTTACGGAAACCCCAATGCTGCAATGATTAAAAGCGTTTTGGGAGATCCTACT 687
Query 638 GCGTGGTCAACCGCAAAATCAGTGATGCGGCGGTCTGGACCGTGGCAGATTAACCCGGAA 697
|||||||||||||||| ||||||||||| |||| ||||||||||||||||||| || |
Sbjct 688 GCGTGGTCAACCGCAAGATCAGTGATGCAGCGGCCTGGACCGTGGCAGATTAATCCAGTT 747
Query 698 AGGGAAAGCCATCAACTTTTGAATGTTTTGTCACATGGAAGCTCAAGCTTTACTACATGT 757
||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 748 AGGGAAACCCATCCACACATGAATGTTTTATCACATGGAAGCTCAAGCTTTACTACATGT 807
Query 758 CCAGAGATCATAAACAACAATAGCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAAC 817
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 CCAGAGATGATAAACAACAATAGCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAAC 867
Query 818 TCAAACCCAATTCAGCAGCAGCAACTTCAGACACCAACAAATTTGTGGCGACCATCTTCT 877
||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 868 TCATACCCAATTCATCAGCAGCAACTTCAGACACCAACAAATACATGGCGACCATCTTCT 927
Query 878 GGTTTCGACTCGATGATCTCATTCTCTAATAGGGTTACAATGGCTCAGCCACCGCCCATT 937
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 928 GGTTTCGACTCGATGATCTCATTCTCCGATAAGGTTACAATGGCTCAGCCACCGCCCATT 987
Query 938 TCAACCCATCA--------TC--A--------G---TACCTCAGCCAAACTTGGGAAGTC 976
||||||||||| || | | ||||||||||||||||||||||||
Sbjct 988 TCAACCCATCAGCCGCCCATCTCAACACATCAGCAGTACCTCAGCCAAACTTGGGAAGTC 1047
Query 977 ATGGCGGGCGAAAAGAGCAATTCACATTATATGTCTCCTGTGAGTCAAATCTCTGAGCCA 1036
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1048 ATCGCGGGCGAAAAGAGCAATTCACATTATATGTCTCCTGTGAGTCAAATCTCGGAGCCA 1107
Query 1037 GCTGATTTCCAAATTAGCAATGGCACCACAATGGGCGGATTTGAGTTGTCTCTTCATCAG 1096
|| |||||||| || |||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct 1108 GCAGATTTCCAGATAAGCAATGGCACCACAATGGGTGGATTTGAGCTGTATCTTCATCAG 1167
Query 1097 CAGGTTCTGAGGCAATACATGGAACCCGAGAACACAAGAGCTTATGACTCTTCTCCTCAA 1156
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1168 CAGGTTCTGAAGCAATACATGGAACCCGAGAACACAAGAGCTTATGACTCCTCTCCTCAA 1227
Query 1157 CATTTCAATTGGTCTCTTTGAGTCTAATCTCTTTCACCTTTTATGATCTTCATCAG 1212
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1228 CATTTCAATTGGTCTCTTTGAGTCTAATCTCTTTCACCTTTTAAGATCTTCATCAG 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5