BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486245
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57930.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1424 0.0
> AT3G57930.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G42190.1);
Has 1519 Blast hits to 1241 proteins in 182 species: Archae
- 0; Bacteria - 60; Metazoa - 576; Fungi - 133; Plants - 127;
Viruses - 30; Other Eukaryotes - 593 (source: NCBI BLink).
| chr3:21447109-21448690 REVERSE LENGTH=1026
Length=1026
Score = 1424 bits (771), Expect = 0.0
Identities = 954/1037 (92%), Gaps = 34/1037 (3%)
Strand=Plus/Plus
Query 1 GTGAGAAGAAAAAGCGTCATTCTTACGtttttttttttAGTTTCACTCACAGACAGAAGC 60
|||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 5 GTGAGAAGAAAAAGCGTCATTCTTACGTTTTTCTTTTAAGTTTCACTCAGAGACAGAAGC 64
Query 61 T--AAGaaa-aaaaGAGAAGCCTTTTGAAAGCAATCAACTTTAATCTTTTTCAACCAACA 117
| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 TAGAACAAAGAAAAGAGAAGCCTTTTGAAAGCAATCAACTTTAATCTTTTTCAACCAACA 124
Query 118 CTAGTACT-AAGTTGTTGctctttctcttc--cttcctcctt-gttcttctcttagatct 173
|||||||| || ||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 125 CTAGTACTCTAGCTGTTGCTCTTTCTCTTCGTTTTCTTCCTTCCTTCTTCTCTTAGATCT 184
Query 174 cttcctttttacttgagtcttatcctttGGATTTTTATTCGATTCGATTTCCTCTGTTTT 233
||| ||||| |||||||||||||||||||||||||||||||||| || |||||| | |||
Sbjct 185 CTTTCTTTTAACTTGAGTCTTATCCTTTGGATTTTTATTCGATTTGA-TTCCTCCG-TTT 242
Query 234 GGTTTTATCAGTTTTCTTTTAGA-----A-TC--T-CTCTGATCTGGCTTTTTGTTGTAG 284
||||| ||||||||| |||||| | || | ||||||||||| |||| | |||||
Sbjct 243 GGTTTGGTCAGTTTTC-TTTAGACTCTTAGTCTTTCCTCTGATCTGGGTTTTAGCTGTAG 301
Query 285 AAACTTGTGAGTTAGATCGATTCAAAACCCAAACATA-AAATTTGTAAAAAGAGAAACCC 343
||||| |||||||||||||||| | ||||| ||| || ||||| ||||||||||||||||
Sbjct 302 AAACTCGTGAGTTAGATCGATTGAGAACCC-AAC-TATAAATTAGTAAAAAGAGAAACCC 359
Query 344 TTTATAGGTTTTTTGGGGTTTTTGTCTCCTCAGTCTGACCAATGGGTTCACAGGTTTCTT 403
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 360 TTTATAGGTTTTTTGGGGTTTTTG--T-CTCAGTCTGACCAATGGGTTCACAGGTTTCTT 416
Query 404 GTGTAGTTGCTTGAGGCTTTTGGGTTGGTGGAGTTGAATAGAGTTATGAGAAGAGGTAGA 463
|| ||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||
Sbjct 417 GTCTAGTTGCTTGAGG-TTTTTGGTTTTTGG-TTTGAATAGAGTTATGAGAAGAGGTAGA 474
Query 464 GGAAAAGGCAAGAGGCAGAATGCTACTGCTAGAGAAGATCGAGGGAGCGGTGAAGAAGAA 523
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 475 GGAAAAGGCAAGAGGCAGAATGCTACTGCTAGAGAAGATCGAGGGAGCGGCGAGGAAGAA 534
Query 524 AAGATTCCAGCTTTTAGGAGAAGAGGGAGGCCACagaagccggtgaaagatgaaatcgaa 583
||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 535 AAGATTCCAGCTTTTAGGAAAAGAGGGAGGCCACAGAAGCCGGTGAAAGATG-AA--GAA 591
Query 584 gaagaagaagtagagctagtgaagaagacagaagaggaagaagacaagGATGATGATACA 643
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 592 GAAGAAGAAGAAGAGCTAGTGAAGAAGACAGATGAGGAAGAAGACAAGGATGATGATACA 651
Query 644 AATGGTTCTGTAACAAGTAAACAAGATATGACAGAGAATGGGAGGAAGAGGAAGAAACCA 703
|||||||| |||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 652 AATGGTTCAGTAACAAGTAAAGAAAATGTGACAGAGAATGGGAGGAAGAGGAAGAAACCA 711
Query 704 GTAGAGTCTAAAGAGAGCAACATAACTGAAGAAGAGAATGGGGTAGGATCAAAATCAAGC 763
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 712 GTGGAGTCTAAAGAGAGCAACATAACTGAAGAAGAGAATGGGGTAGGGTCAAAATCAAGC 771
Query 764 ACGGAAGATTCGATGAAATCATCGTCGTCTATTGGGTTTAGGCAGAATGGGAGCAGAAGG 823
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 ACAGAAGATTCTATGAAATCATCGTCGTCTATTGGGTTTAGGCAGAATGGGAGCAGAAGG 831
Query 824 AAGAACAAACCAAGACGAGCTGCTGAAGCTGTTGTTGAATGTAATGGGGTTTGAAAAGTG 883
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 832 AAGAACAAACCAAGACGAGCTGCTGAAGCTGTTGTTGAATGTAATGGGGTTTGAAAAGAG 891
Query 884 GTTCTTAAAACGCTTCTGAAACCGCCTTTTTGGTGtttttttt-ttGTGTT-GTTGGATA 941
|||||||| ||||| |||||||||||||||||| |||||||| |||| || ||| ||||
Sbjct 892 GTTCTTAA--CGCTTTTGAAACCGCCTTTTTGGTATTTTTTTTGTTGTTTTTGTTAGATA 949
Query 942 CTTTTGCTGTTAGAAACCCGAGTTTGATGCGGGTGCGTTTTGGTTTCATTACATGGAATC 1001
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 950 CTTTTGCTGTTATAAACCCGAGTTTGATGCGGGTGCGTTCTGGTTTCATTACATGGAATC 1009
Query 1002 AGAATTTCGATTTTTCG 1018
| || ||||||||||||
Sbjct 1010 AAAACTTCGATTTTTCG 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49882507971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5