BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486247

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G57950.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   793    0.0  


> AT3G57950.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; 
EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation 
and expansion stage; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G42180.1); Has 81 
Blast hits to 81 proteins in 11 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr3:21460423-21460968 
FORWARD LENGTH=546
Length=546

 Score =  793 bits (429),  Expect = 0.0
 Identities = 512/549 (93%), Gaps = 17/549 (3%)
 Strand=Plus/Plus

Query  1    ATGCAGCTCAAATCATCATCACCAtcttcttcttcttcttcttcATCATCATCCATGAAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCAGCTCAAATCATCATCACCATCTTCTTCTTCTTCTTCTTCATCATCATCCATGAAA  60

Query  61   CTCAAAACTCTAATCCAAAATCTCCTCACACACCCTCTCTACCGTTTCCTAAGAGCTCTT  120
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTCAAAACTCTAATCCAAAACCTCCTCACACACCCTCTCTACCGTTTCCTAAGAGCTCTT  120

Query  121  GCGAGAGCCAAATCAATCTTTCTAGAGATCTCAAaacacaacaacaacaacaacaacaaG  180
            |||| |||||||||||||||||||||||||||   | | ||| |||||| ||||||||||
Sbjct  121  GCGAAAGCCAAATCAATCTTTCTAGAGATCTC---A-A-AAC-ACAACAGCAACAACAAG  174

Query  181  AAACGAAAACTCATGATGCTTTTTCCAACAAAGGCTTCAAAGAACCAACGCAAGATCTTC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  175  AAACGAAAACTCATGATGCTTTTTCCAACAAAGGCTTCAAAGAACCAACGCAAGATCTTC  234

Query  241  TTCGGATCTTTCAGATTGCATTACAATTGGTGTTCCTCTCATGTTGCTCCTGTCCCTCAA  300
            |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct  235  TTCGGATCTTTCAGATTGCATTACAACTGGTGTTCCTCTCATGTTGTTCCTGTCCCTCAA  294

Query  301  CCTTTTCCTTTCCCTTCGTCTTACATTAATGGTGGGGAAGATGATGACTCTCAGCTCTCT  360
            || |||||||||||||| |||||||| |||||||  ||||| ||||| |||||||| |||
Sbjct  295  CCGTTTCCTTTCCCTTCTTCTTACATCAATGGTGAAGAAGAAGATGATTCTCAGCTTTCT  354

Query  361  GGTTACCTCGAGTGGCTCGAACAAAAGAAAGT-CGAAGATGTGGAAGAGATTAGAGATGT  419
            || |||||||||||||| ||||| ||||| || ||| ||||||||||||||  |||||||
Sbjct  355  GGCTACCTCGAGTGGCTTGAACACAAGAA-GTTCGATGATGTGGAAGAGATCGGAGATGT  413

Query  420  TGTAGCTGATG------ATGA---TATTGATCATTTGGCGGATATGTTCATCGCTAATTG  470
            |||||||||||      ||||   ||||||||||||||||||||||||||||||||||||
Sbjct  414  TGTAGCTGATGGTGGTGATGACGATATTGATCATTTGGCGGATATGTTCATCGCTAATTG  473

Query  471  CCACGAGAAGTTCTTGCTCGAGAAAGTTGAATCTTACAGGAGATTTCAAGAAATGTTAGA  530
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  474  CCACGAGAAGTTCTTGCTCGAGAAAGTTGAATCTTACCGGAGATTTCAAGAAATGTTAGA  533

Query  531  AAGGGGTTT  539
            |||||||||
Sbjct  534  AAGGGGTTT  542



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25820351558


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5