BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486249
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT3G57990.1 | Symbols: | unknown protein; Has 1497 Blast hits ... 1338 0.0
> AT3G57990.1 | Symbols: | unknown protein; Has 1497 Blast hits
to 1323 proteins in 52 species: Archae - 0; Bacteria - 4;
Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes
- 1375 (source: NCBI BLink). | chr3:21470002-21471486
REVERSE LENGTH=1485
Length=1485
Score = 1338 bits (724), Expect = 0.0
Identities = 885/960 (92%), Gaps = 21/960 (2%)
Strand=Plus/Plus
Query 74 ATGAAGGCATCGATGAAGTTTCGTGAAGAGCAAAAGCCTCTTTTTAGGGCTAAGGTTCCT 133
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 140 ATGAAGGCATCGATGAAGTTTCGTGAAGAGCAAAAGCCTCTTTTTAGGGCTAAAGTTCCT 199
Query 134 TTGAGTATCTTAGGTTTACCTTTTCAATCTGGTATCGTCGCCGGAGAATCCAAGGAGCTC 193
|| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 200 TTAAGCATCTTAGGTTTACCCTTTCAATCTGGAATCGTCGCCGGAGAATCCAAGGAGCTC 259
Query 194 AGTCTCAATCTCTCCACTTTCTTCGAATCTGGACCTTCTCTCAAGGTCGCTTACCGTCCA 253
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 260 AGTCTCAATCTCTCCACTTTCTTCGAATCTGGCCCTTCTCTCAAAGTCGCTTACCGTCCA 319
Query 254 AACGATTCGTGGAACCCTTTCTCTCTAATCGTCAAAACCGGATCGGGATCGTTCGGTTCT 313
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 AACGATTCGTGGAATCCTTTCTCTCTAATCGTCAAAACCGGATCGGGATCGTTCGGTTCT 379
Query 314 CCGATTTCAAGCTCTATGCTCATGAGCGCTGAATTCAATCTCCTAGGTAAAGGAAACCCT 373
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 380 CCGATTTCAAGCTCTATGCTCATGAGCGCTGAATTCAATCTCCTAGGTCAAGGAAACCCT 439
Query 374 AGCTTTATGCTTCACTTCAAACCTCAATTCGGCGATTTCTCTATCAAAAAGTCTCATTCG 433
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 AGCTTTATGCTCCACTTCAAACCTCAATTCGGCGATTTCTCTATCAAAAAGTCTCATTCT 499
Query 434 TCGTCTCAA----ACA--AATCTGATCAAATCGATGAATGGATCTGTTTCGGAAGATGAT 487
|||||| | | | ||| |||||||||||||||||||||||||||| |||||||||
Sbjct 500 TCGTCTGGATTTGAGAGGAATTTGATCAAATCGATGAATGGATCTGTTTCCGAAGATGAT 559
Query 488 TCTTCGATTGAGGTGGTGGATACTCCAGCGGTCAATGGATGCGGCGGAGGATTTCGAAAA 547
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 560 TCTTCGATTGAGGTGGTGGATACTCCAGCGGTCAATGGATGCGGCGGAGGATTTAGAAAA 619
Query 548 GTCACGGTTCTGCCGTCAACTTCTGCTGGAGATATCGCTGGATTGTTATCCGGCGTTGAG 607
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 620 GTCACGGTTCTGCCGTCAACTTCTGCTGGAGATATCGCTGGATTGTTATCTGGCGTTGAG 679
Query 608 GTTGCGGCGAGGACCTCTTTGCCTGTGAGAGGACGCGCCGTTTTGAATTTCCGGTGGGGC 667
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 680 GTTGCGGCGAGGACGTCTCTGCCTGTGAGAGGACGCGCCGTTTTGAATTTCCGGTGGGGC 739
Query 668 GTTAGGGTTCCTACGGAGATCAGACGCGATTTCGATCCAACGGCTGCGATTTCGCTGAGG 727
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 740 GTTAGGGTTCCTACGGAGATCAGACGCGATTTCGATCCAACGGCTGCTATTTCGTTGAGG 799
Query 728 AGATTCCCGTTTTTGGTGATGAATAAAATCGGAATCGAACACGTGGACGGCTCAGATGCT 787
|||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 800 AGATTCCCTTTTTTGGTGATGAATAAAATAGGAATCGAACACGTGGACGGCGCAGATGCT 859
Query 788 AAAGTGACCAAACCCAC-GAGCGATCCGGGTCAGGTCACAACAAGTGG-TGACGTGG-CG 844
|||||||||||| |||| | | ||||||||| | || | || | | || |
Sbjct 860 AAAGTGACCAAATCCACTG-GTGATCCGGGTAAAGTTTCGGGTCC-GGCTCA-GTTCACA 916
Query 845 G-AGGTG-TGTT-TGGCCGTGAATCGGCAGATGGAGGAGCTTCGAACGGAGAACAAGCAG 901
| ||| || |||| | || || ||| |||||||||||||||||||||||||||
Sbjct 917 ACAAGTGGTGACGTGGC-G-GA---GGT-GATAGAGGAGCTTCGAACGGAGAACAAGCAG 970
Query 902 TTAAAGAGAGCCGTCGAAGATCTCCGGGAAGTTATATCAACCGTCCGTCCATACTCGCCG 961
|||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 971 TTAAAGAGAGCCGTTGAAGATCTCCGGGAAGTAATATCAAACGTCCGTCCATACTCGCCG 1030
Query 962 GCGACAATTGATTACGGATCACACTCAAAGTACCGCGAACCCGAGAGGAGCAACAACAAC 1021
|||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||||||
Sbjct 1031 GCGACAATTGATTACGGATCACACTCGAAGTATCGCGAATCCGAGAGGAACAACAACAAC 1090
Score = 523 bits (283), Expect = 2e-147
Identities = 349/379 (92%), Gaps = 11/379 (3%)
Strand=Plus/Plus
Query 1012 CAACAACAACGGGAGATCGAGAGCTGATCGGTGGAGCAGCGAGAGAACGACGACGTCTGA 1071
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1108 CAACAACAACGGGAGATCGAGAGCTGATCGGTGGAGCAGCGAGAGAACGACAACGTCTGA 1167
Query 1072 TTACGGCGGGAAGAAAAGCAAGGAAGAGGGCGATGTGGCTGAGGAGCTGAAGAAAGCTTT 1131
|||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1168 TTACGGTGGGAAGAAAAGCAAGGAAGAGGGCAATGTAGCTGAGGAGCTGAAGAAAGCTTT 1227
Query 1132 GAAAGGAGCCGCTTGAAGCTTCTATGGCGGCTATTTGGTAATCACAGGCTTTATTCGAAT 1191
||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct 1228 GAAAGGAGCTGCTTGAAGCTTCTATGGCGGCTATT-GGTAATCGCAGGCTTTACTCGAAT 1286
Query 1192 TCCAACTACATTTGTCGAC-TTAATCAGCTATGGCTTTTGTATATATATGCGTTGAATCT 1250
| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct 1287 TACAATTACATTTGTCGACCTTAATCAGCTATTGCTTTTGTATATATATGCGTTGAAT-T 1345
Query 1251 -TCTGGATTAGATTTGCAGAACTTGTTTTGAATCTTTTGATGGAATCTTCAGAGTTTTAT 1309
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1346 ATCTGGATTAGATTTGCACAACTTGTTTTGAATCTTTTGATGGAATCTTCAGAGTTTTGT 1405
Query 1310 ATGAGATTATGCTTTTGAACTCTCTTTATGGAACTGATAAGCATGTTGA--GTTGA-TT- 1365
|||||||||||||||| || ||||||||| ||||| ||| ||| ||||| ||||| ||
Sbjct 1406 ATGAGATTATGCTTTTCAATTCTCTTTATTGAACTTATATGCAGGTTGATTGTTGAATTG 1465
Query 1366 -T--GAATCAGTATTATAT 1381
| ||||||||||| |||
Sbjct 1466 ATTTGAATCAGTATTCTAT 1484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5