BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486251
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58010.1 | Symbols: PGL34 | plastoglobulin 34kD | chr3:21475... 1637 0.0
> AT3G58010.1 | Symbols: PGL34 | plastoglobulin 34kD | chr3:21475805-21477569
REVERSE LENGTH=1177
Length=1177
Score = 1637 bits (886), Expect = 0.0
Identities = 983/1030 (95%), Gaps = 6/1030 (1%)
Strand=Plus/Plus
Query 2 TTCAATGGCATTGATCCAACGTGGTTCGGTATCTGGGACCTCTGCGGTTCGATTGAGCTT 61
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 103 TTCAATGGCATTGATCCAACATGGTTCGGTTTCTGGGACCTCTGCGGTTCGATTGAGCTT 162
Query 62 CTCATCCTCCGTATCACCAACGTCGTCTTCTCCTCCACCGTCAAGGGTTTCTCTCAATTT 121
||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 163 CTCATCCTCTGTATCACCACCGTCGTCTTCTCCTCCACTGTCAAGGGTTTCTCTCAATTT 222
Query 122 TCAGTCGGAGAAGAAGAGTTGTTGCCGGAGAATGATATGCAGAGCTATGGTTCAAGACAC 181
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 223 TCAGTCGGAGAAGAAGAGTTGTTACCGGAGAATGATATGCAGAGCTATGGTTCAAGACTC 282
Query 182 GGTTCAAGGGATTCCTTCGGTTTACGCCAGAGAAATGGAGCGTCTCTCTGCTAAGGAATC 241
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GGTTCAAGGGATTCCTTCAGTTTACGCCAGAGAAATGGAGCGTCTCTCTGCTAAGGAATC 342
Query 242 GCTTATTCTCGCCTTCAATGATGCTGGGGGATTTGAGGCTCTAGTTACTGGGAAGATCAC 301
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 343 GCTTATTCTCGCCTTCAATGATGCTGGAGGATTTGAGGCTCTAGTTACAGGGAAGATCAC 402
Query 302 TGATATGCAAAAGATTGATGTGAATGAGAGGATAACCACTCTTGAGCGGCTTAATCCAAC 361
||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||
Sbjct 403 TGATATGCAAAAGATTGATGTCAATGAAAGGATAACGAATCTTGAGCGGCTTAATCCAAC 462
Query 362 TCCTAGACCAACCACGTCTCCTTATCTTGAAGGTAGATGGAGTTTTGAGTGGTTTGGA-T 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 463 TCCTAGACCAACCACGTCTCCTTATCTTGAAGGTAGATGGAGTTTTGAGTGGTTTGGAGT 522
Query 421 CTAATACGCCTGGTTCACTTGCTGTTCGGGTTATATTCGAGAGGTTTCCTTCGACATTGG 480
| || || |||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 523 C-AACACTCCTGGTTCTCTTGCTGTTCGGGTTATGTTCGAGAGGTTCCCTTCGACATTGG 581
Query 481 TGAGTCTATCCAGTATGGAGATAGTT-ATTAAGGATAATAACACAATGGCAACAGCAAAC 539
|||||||||||| |||||| ||| || ||||| ||||||||||||| |||||||||||||
Sbjct 582 TGAGTCTATCCAATATGGAAATA-TTCATTAAAGATAATAACACAAAGGCAACAGCAAAC 640
Query 540 ATCAAACTCCTAAACTCGATAGAAAACAAAATCATCCTGTCATCGAAATTGACAATAGAA 599
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 641 ATCAAACTCCTAAACTCGATAGAAAACAAAATCACCCTGTCATCGAAATTGACAATAGAA 700
Query 600 GGGCCTTTAAGGATGAAAGAAGAGTATTTAGAGGGAATGCTCGAGTCGCCAACGGTTATT 659
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 701 GGGCCTTTAAGGATGAAAGAAGAGTATTTAGAGGGATTGCTCGAGTCGCCAACGGTTATT 760
Query 660 GAAGAAGCAGTACCTGACCAGCTAAGAGGTTTATTGGGTCAAGCTTCTACCACGTTGCAG 719
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 761 GAAGAAGCAGTACCTGACCAACTAAGAGGTTTATTGGGTCAAGCTACTACCACGTTGCAA 820
Query 720 CAGCTTCCTGCACCTATCAAGGATACTCTAGCCAATGGTCTAAGAATTCCCCTTGGTGGA 779
|||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 821 CAGCTTCCTGAACCTATCAAAGATACTCTAGCCAATGGTCTAAGAATCCCCCTTGGTGGA 880
Query 780 ACTTACCAAAGATTCTTCATGATATCTTATCTAGACGACGAGATTCTTATTGTAAGAGAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 ACTTACCAAAGATTCTTCATGATATCTTATCTAGACGACGAGATTCTTATTGTAAGAGAT 940
Query 840 ACCGCAGGAGTGCCTGAAGTTCTAACAAGGGTTGAAACATCGTCTTCGATGTCTTCATCG 899
|||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct 941 ACCGCAGGAGTGCCTGAAGTTCTAACGAGGGTGGAAACATCGTCTCCGATGTCTTCATCG 1000
Query 900 AGCGTTGTAGAGAATCTTGAATACAACAGTTAAAAACAGTTTCTCTTGTTACTCTGATTC 959
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1001 AGTGTTGTAGAGAATCTTGAATACAACAGTTAAAAACAGGTTCTCTTGTTACTCTGATTC 1060
Query 960 TCTCTGTAAATGTAAGAACAAAAAGTGTATCCAACTTACCAACCTCAAC-ACAGTATATC 1018
|||||||||||||||||||||||||||||| ||||||||| |||||| | | ||||||||
Sbjct 1061 TCTCTGTAAATGTAAGAACAAAAAGTGTATACAACTTACCGACCTCA-CTATAGTATATC 1119
Query 1019 ACCGGCCACA 1028
|||| ||||
Sbjct 1120 TCCGGACACA 1129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5