BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486254
Length=1924
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58030.1 | Symbols: | RING/U-box superfamily protein | chr3... 2767 0.0
> AT3G58030.1 | Symbols: | RING/U-box superfamily protein | chr3:21484467-21487042
FORWARD LENGTH=2172
Length=2172
Score = 2767 bits (1498), Expect = 0.0
Identities = 1720/1824 (94%), Gaps = 28/1824 (2%)
Strand=Plus/Plus
Query 114 GGATTTGAGAATTAGGGTTTTCCGATTGGGGGTTTTCTTGTTGATGTTTACCTT--TCAA 171
|||||||||||||||||||||| |||||||||||||||| |||||| ||||||| |||
Sbjct 338 GGATTTGAGAATTAGGGTTTTCTGATTGGGGGTTTTCTTATTGATG-TTACCTTCACCAA 396
Query 172 AtttttttCGGAGATCTAGA----G-T-A---ATGGAATAATGGCTCATCTCTTCTTGCC 222
||| || ||||||||||||| | | | ||||||||||||||| || |||||||
Sbjct 397 ATTGTTGTCGGAGATCTAGATTTGGTTCAGTTATGGAATAATGGCTC--GTC-TCTTGCC 453
Query 223 ATCTCTATTTGTAATTAGCATCATCTTGTTCGTCCAAAGACGACTCTTTTCTTCGTTAAT 282
||||||||| |||||||||||| |||| ||| ||||||||| ||| |||||||||||||
Sbjct 454 ATCTCTATTCGTAATTAGCATCTTCTTCTTCATCCAAAGACTCCTCCTTTCTTCGTTAAT 513
Query 283 CCATCGCCATCTATTGAATCTGAAGCAAATCTGAGAATCTACCAAACTCCCACGCCTGTA 342
||||||||| ||||||||||||||||||||||||||||||||| ||||| | | ||||||
Sbjct 514 CCATCGCCAGCTATTGAATCTGAAGCAAATCTGAGAATCTACCGAACTCACGCACCTGTA 573
Query 343 TTTTGCTTCCACGGTATATATCTCTCGGAGACGGAGTACATATTGTTCACCGCAAGTGAA 402
| |||||| |||| || | | | | |||||||||||||||||||||||| ||||||||||
Sbjct 574 TATTGCTTACACGATACAGAGCACACGGAGACGGAGTACATATTGTTCAGCGCAAGTGAA 633
Query 403 AGCAAGAGCCTTTTTGTTTATTGATGGGTGAGGAGTTAGCTGACACAATGAACCTGGATT 462
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 AGCAAGAGCCTTTTTGTCTATTGATGGGTGAGGAGTTAGCTGACACAATGAACCTGGATT 693
Query 463 TGAATCTTGGGCCTGGTCCTGAGTCTGATCTCCAACCTGCACCAAACGAGACTGTGAATT 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TGAATCTTGGGCCTGGTCCTGAGTCTGATCTCCAACCTGCACCAAACGAGACTGTGAATT 753
Query 523 TGGCCGATTGGACTAATGACCCGCCTGAGAGATCTTCTGAAGCTGTGACGAGGATCAGGA 582
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 754 TGGCTGATTGGACTAATGACCCGCCTGAGAGATCTTCTGAAGCTGTGACAAGGATCAGGA 813
Query 583 CTCGGCATAGGACACGCTTCAGACAGCTTAATCTCCCGATCCCGGTTCTATCTGAAACCC 642
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 CTCGGCATAGGACACGGTTCAGACAGCTTAATCTCCCGATCCCGGTTCTATCTGAAACCC 873
Query 643 ATACCATGGCTATAGAACTGAACCAGTTGATGGGAAGTTCTGTCAATGGAGCTGCTATGC 702
|||||||||||||||| || |||||||||||||||| |||||| ||| ||||||||||||
Sbjct 874 ATACCATGGCTATAGAGCTCAACCAGTTGATGGGAAATTCTGTAAATAGAGCTGCTATGC 933
Query 703 AGACTGGTGAGGGTAGTGAAAGAGGCAATGAGGATCTGAAAATGTGTGAGAACGGCGACG 762
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
Sbjct 934 AGACTGGTGAGGGTAGTGAAAGAGGCAATGAGGATTTGAAAATGTGTGAGAATGGCGATG 993
Query 763 GAGCCCTTGGGGACGGTGTATCGGATAAGAAAGCGGATGTCGAGAAAAGCAGTGGCAGCG 822
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 994 GAGCCCTTGGGGACGGTGTATTGGATAAGAAAGCGGATGTCGAGAAAAGCAGTGGCAGCG 1053
Query 823 ACGGTAACTTTTTCGATTGTAATATATGTTTGGATTTGTCCAAGGAGCCGGTTCTCACCT 882
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1054 ACGGTAACTTTTTCGATTGTAATATATGTTTGGATTTGTCGAAGGAGCCGGTTCTCACCT 1113
Query 883 GTTGTGGCCATCTTTACTGTTGGCCTTGTCTGTACCAATGGTTACAAATTTCGGATGCAA 942
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GTTGTGGTCATCTTTACTGTTGGCCTTGTCTGTACCAATGGTTACAAATTTCGGATGCAA 1173
Query 943 AGGAATGTCCGGTTTGCAAAGGAGAGGTGACCTCCAAAACCGTGACACCGATCTATGGGC 1002
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1174 AGGAATGTCCTGTTTGTAAAGGAGAGGTGACCTCCAAAACCGTGACACCGATCTATGGAC 1233
Query 1003 GTGGGAACCACAAAAGAGAAATTGAAGAGAGTTTAGATACTAAGATCCCCATGAGACCAC 1062
|||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1234 GTGGAAACCACAAGAGAGAAATTGAAGAGAGTTTAGATACTAAGGTCCCCATGAGACCAC 1293
Query 1063 ATGCGAGACGCATTGAGAGCTTGAGGAATACAATTCAAAGGTCGCCTTTTACAATACCGA 1122
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1294 ACGCGAGACGCATTGAGAGCTTGAGGAATACAATTCAAAGGTCGCCTTTTACAATACCAA 1353
Query 1123 TGGAAGAAATGATTAGACGTATACAGAATAGGTTTGACAGGGATTCAACCCCGGTCCCTG 1182
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1354 TGGAAGAAATGATTAGACGTATACAGAATAGGTTTGACAGGGATTCAACCCCAGTCCCTG 1413
Query 1183 ATTTTAGTAACCGCGAGGCATCGGAGAGAGTCAACGATCGAGCCAATTCGATCCTTAACC 1242
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1414 ATTTTAGTAACCGAGAGGCATCAGAAAGAGTCAACGATCGAGCCAATTCGATCCTTAACC 1473
Query 1243 GGTTGATGACATCTAGGGGAGTTAGATCAGAGCAGAACCAGGCTAGTGCTGCAGCAGCAG 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 GGTTGATGACATCTAGGGGAGTTAGATCAGAGCAGAACCAGGCTAGTGCTGCAGCAGCAG 1533
Query 1303 CCATTGTCGCAGCAACAGAGGATATCGATCTGAATCCAAACATTTCTCCTGATCTTGAAG 1362
|||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 1534 CCATTGTCGCAGCATCAGAGGATATTGATCTAAATCCAAACATTGCTCCTGATCTTGAAG 1593
Query 1363 GAGAAACCAACACGAGATTCCATCCTCTGTTGATCAGGAGACAGTTACAGTCGCACCGAG 1422
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1594 GAGAAAGCAACACGAGATTCCATCCTCTCTTGATCAGGAGACAGTTACAGTCGCACCGAG 1653
Query 1423 TTGCAAGGATCTCGACTTTCACTTCAGCGTTGAGTTCTGCTGAGCGGCTTGTAGATGCGT 1482
||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||||
Sbjct 1654 TTGCAAGGATCTCGACTTTCACTTCTGCGTTGAGTTCAGCTGAGAGGCTTGTGGATGCGT 1713
Query 1483 ATTTTAGGACTCATCCATTGGGGAGGAACCACCAAGAGCAAAACCATCATGCTCCTGTTA 1542
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1714 ATTTTAGGACTCATCCGTTGGGGAGGAACCACCAAGAGCAAAACCATCATGCTCCTGTTG 1773
Query 1543 TGGTTGATGATAGAGACTCATTCTCAAGCATTGCAGCTGTTATAAACTCTGAGAGTCAAG 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 TGGTTGATGATAGAGACTCATTCTCAAGCATTGCAGCTGTTATAAACTCTGAGAGTCAAG 1833
Query 1603 TGGACACTGCAGTTGAGATTGATTCTATGGTCACTCTTTCGACATCGTCTTCGAGGAGAA 1662
|||| |||||||||||||| |||||||||| | ||||||||||||||| ||||||||||
Sbjct 1834 TGGATACTGCAGTTGAGATCGATTCTATGG-C--TCTTTCGACATCGTCCTCGAGGAGAA 1890
Query 1663 GGAATGAGAATGGTTCGAGGGTGTCTGATGTAGACAGTGCAGATTCTCGTCCGCCTAGGA 1722
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1891 GGAATGAGAATGGTTCGAGGGTTTCTGATGTAGACAGTGCAGATTCTCGTCCGCCTAGGA 1950
Query 1723 GAAGGAGATTTACTTGAGAAACATAAATAAAAGAAAGCTTTCAACCTGGAAGCTGACGAT 1782
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1951 GAAGGAGATTTACTTGAGAAACATAAATAAGA-AAAGCTTTCAACCTGGAAGCTGACGAT 2009
Query 1783 GATGATGATTaagaagaagagaagaagaagattgtgtaactttatttttcctgtgttgct 1842
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 2010 GATGATGATTAAGAAGAAGATAAGAAGAAGATTGTGTAACTTTATTTTTCTTGTGTTGCT 2069
Query 1843 tgttggtttgttgtaatttgtttt-gtatttttctcaatagggatggttttttt-aatcg 1900
| | | || || |||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 2070 T-T-G-TT-GT---AATTTGTTTTTGTATTTTTCTCGATAGGGATGGTTTTTTTTAATCG 2122
Query 1901 aaatttttcttttatctttttttt 1924
||| |||||||| |||||||||||
Sbjct 2123 AAAATTTTCTTTCATCTTTTTTTT 2146
Score = 124 bits (67), Expect = 2e-27
Identities = 71/73 (97%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 1 ATTTTTCCATGGCGTTGTCGGAGTTTCAGCTAGCTCTGAGCTTGGTGGTCTTGTTGTTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 13 ATTTTTCCATGGCGTTGTCGGAGTTTCAGCTAGCTCTGAGCTTGGTGGTCTTGTTCTTCT 72
Query 61 AGCTGATTTGATC 73
|||||||||||||
Sbjct 73 AGCTGATTTGATC 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95280634410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5