BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486259
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58070.1 | Symbols: GIS | C2H2 and C2HC zinc fingers superfa... 1182 0.0
> AT3G58070.1 | Symbols: GIS | C2H2 and C2HC zinc fingers superfamily
protein | chr3:21506613-21507654 REVERSE LENGTH=1042
Length=1042
Score = 1182 bits (640), Expect = 0.0
Identities = 778/842 (92%), Gaps = 19/842 (2%)
Strand=Plus/Plus
Query 10 CTCTCTCTCTATGGACGAGGCTGCCAGAGAAACAGAAACTCAAGATTTCATGAACGTCGA 69
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 39 CTCTCTCTCTATGGACGAGGCTACCGGAGAAACAGAAACTCAAGATTTCATGAACGTCGA 98
Query 70 ATCCTTCTCTCAGCTTCCTTTCATTCACCGTCCTAAAGATAAGAACCCTAAACCCATTCG 129
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 99 ATCCTTCTCTCAGCTTCCTTTCATTCGCCGTCCTAAAGATAAGAACCCTAAACCCATTCG 158
Query 130 TGTCTTCGGCAAAGATTTCACCGGCGGAGGTTTCTCTAGTACCACCGGTCAAGAAGACTA 189
||||||||| ||||||||||||||| ||| |||||||| ||| |||||||||||||||||
Sbjct 159 TGTCTTCGGAAAAGATTTCACCGGCAGAGATTTCTCTATTACTACCGGTCAAGAAGACTA 218
Query 190 CTCCGATCCCTACCAGACCAAAGACAaagaagaagaagaagaagaagaagaCCAAACCGG 249
| ||||||| |||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 219 CACCGATCCTTACCAGACCAAAAACAAAGAAGAAGAAGA-G--GAAGAAGACCAAACCGG 275
Query 250 AGATAACAGTAAGGACAATAATAGCATCAGCAACAACAGGAGATTCGAGTGTCACTATTG 309
||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 276 AGACAACAGTACGGACAATAATAGCATCAGCCACAACAGGAGATTCGAGTGTCACTATTG 335
Query 310 CTTTAGAAACTTTCCTACTTCACAAGCCCTAGGTGGACACCAAAACGCTCACAAACGCGA 369
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CTTTAGAAATTTTCCTACTTCACAAGCCCTAGGTGGACACCAAAACGCTCACAAACGCGA 395
Query 370 ACGCCAGCTCGCCAAACGTGGTGTTCCCTCTTACTTTTATCATCCTGACAATAACCCTTA 429
||| ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 396 ACGTCAGCTTGCCAAACGCGGTGTTTCCTCTTACTTTTATCATCCTGACAATAACCCTTA 455
Query 430 CAGTTACCGTCATTACCCGTCGTGGACCAGTGGTCCATTAACAGCGGCTAGGTCCTACGG 489
||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||
Sbjct 456 CAGTTACCGTCATTACCCGTCGTGGACCAATGGTCCGTTAACCGCGGCTAGGTCCTATGG 515
Query 490 AGGATATGCTTCTGGTCCTCAGCTGTCGGCGTATTATACACGACCGAGCTATGGGAGTCA 549
||||| | ||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||
Sbjct 516 AGGATTTTCTTCTGGTCCTAAGCCGTCGGGGTATTATACACGACCCAGCTATGGGAGTCA 575
Query 550 GTTAGGGCTATGGCGTCTACCGCCTCGAGTTCAAGGCGTTTATAACTCAAACGCAACGTT 609
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 576 GTTAGGACTATGGCGTCTACCGCCTCGCGTTCAAGGCGTTTATAACTCAAACGCAGCGTT 635
Query 610 TACTAGTAATGGCTCTTCTTCT------AATTCGAGTTTACCGTTGTTGGCCGGTTCTCG 663
|||||||||||||||||||||| ||||||| ||||||||||||| || ||||||
Sbjct 636 TACTAGTAATGGCTCTTCTTCTTCTTCTAATTCGACTTTACCGTTGTTGACCCGTTCTCA 695
Query 664 AACCCAACTACCATCTCAAGTGGGTGGCTCCGCTGCTCAAAACAGAATGTCATCGTACCG 723
||| |||||| |||| ||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 696 AACTCAACTATCATCGCAAGTGGGTGGCTCCGCTGCTCAGAACAGAATGTCATCGTAC-G 754
Query 724 GT-ACGGATTGAGCTCTAACTTGCAAGATCATGTTAGTCTCGATCTTCATCTTTAAAGAT 782
|| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 755 GTTACGGATTGAGCCCTAACGTGCAAGATCATGTGAGTCTCGATCTTCATCTTTAAAGAT 814
Query 783 TTGAAAACAAATTAAAACTCGGAGTGTTGTTGAGTGTTATGTAACTTAGTG-AAGGAAAA 841
||||||||||| |||||||| | | |||||||||||||||||||||| ||| ||||
Sbjct 815 TTGAAAACAAAATAAAACTC----T-TA-TTGAGTGTTATGTAACTTAGTGCAAG-AAAA 867
Query 842 AA 843
||
Sbjct 868 AA 869
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 844 TAAGAAACGGCACGATGTGTAAGATTCAC 872
|||||||||||||||||||||||||||||
Sbjct 957 TAAGAAACGGCACGATGTGTAAGATTCAC 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42548322509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5