BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486261
Length=2391
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3485 0.0
> AT3G58110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured
cell; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G42370.1); Has 2534 Blast hits to 1905
proteins in 233 species: Archae - 11; Bacteria - 102; Metazoa
- 890; Fungi - 241; Plants - 124; Viruses - 59; Other Eukaryotes
- 1107 (source: NCBI BLink). | chr3:21516745-21519862
FORWARD LENGTH=2708
Length=2708
Score = 3485 bits (1887), Expect = 0.0
Identities = 2242/2409 (93%), Gaps = 42/2409 (2%)
Strand=Plus/Plus
Query 1 AGTTTAGCTTTTCCGAGGAGAAAATCATCAGCCATGGCTTCTTCTCCGCCGTCAGATCCC 60
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1 AGTTTAGCTTTTCCGAGGAG--AA-GATCAGCCATGGCTTCTTCTCCGCCGTCAGATCCC 57
Query 61 ACCGATCGAGATGCAGAAGCTCTTTCTG-GGAACCCTAGTTTAATTGAGAAACCGAGTTT 119
|||||||||||||||||| ||||||| | ||||||||||||||| ||||| ||||| |
Sbjct 58 ACCGATCGAGATGCAGAAACTCTTTC-GCAGAACCCTAGTTTAATCGAGAAGCCGAGCGT 116
Query 120 AGTAGAGCAAGGAAGTATTTCATTGGAGAATGCGAATTCCGTCCCT-AACAAAGCCCTAA 178
|||||||||||||||| |||| |||||||| | | || || || |||||| |||
Sbjct 117 AGTAGAGCAAGGAAGTCTTTCCGTGGAGAAT--G---T-CG---CTGAA-AAAGCCTTAA 166
Query 179 ATCTAGAATCAACACAGGACGAAGAAACACAGAATC-TGCAGGATCCGGAGGAATCCGAC 237
|| ||||||||||||| ||||||||||| ||||| | ||||||||| |||||| ||||||
Sbjct 167 ATTTAGAATCAACACAAGACGAAGAAACGCAGAA-CTTGCAGGATCTGGAGGAGTCCGAC 225
Query 238 GGTAGAGATCAGCAGTTAGAAGCTTCGATTGAGGAAAGTAGGAACGAAGAGGACGATATG 297
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 226 GGTAGAGATCAGCAATTAGAAGCTTCGCTTGAGGAAAGTAGGAACGAAGAGGACGATATG 285
Query 298 GACACGACGCAAGCCGTTAGCTCTTCTTATTACCGCCGTGGAGGTGGACCGAAGCGGAAG 357
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 286 GACACGACGCAAGCCGTAAGCTCTTCTTATTACCGCCGTGGAGGTGGACCAAAGCGGAAG 345
Query 358 AAAGGGATTCAGAAGAAACGAAAGCAGCAAGAGAAGTCAAAAGAGAAGCTTGAGGTACTT 417
||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 346 AAAGGGAATCAGAAGAAACGAAAGCAGCTAGAGAAGTCAAAAGAGAAACTTGAGGTACTT 405
Query 418 CTGAAAACTTTGAAGCCCATTGCTTTCGTTCCATGTAAAACCCTAGATTTTGCTCGGCAT 477
|||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 406 TTGAAAACTTTGAAGCCGATAGCTTTCGCTCCATGTAAAACCCTAGATTTTGCTCGGCAT 465
Query 478 GAGAAGCTCTTGAAGACGTTAGGTCTGTGGGATTTTGTGCATTTGGAGTTTGATCAAAAT 537
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 466 GAGAAGCTATTGAAGACGTTAGGTCTGTGGGATTTTGTGCATTTGGATTTTGATCAAAAT 525
Query 538 ATCCGTCAGGATCTAGTGGCGAACCTTGTTGCGTATTATAATTCAGAGGGCCGATGCAGC 597
|||||| |||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 526 ATCCGTGAGGATCTAGTAGCGAACCTTGTTGCGTATTATAATTCAGAGCGTCGATGCAGC 585
Query 598 TATGTTAATGGGGCTAGGATTAACGTCAGCCGTGCTGATTTGGCTCGAGCGTTGAAGTTG 657
||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 586 TATGTAAATGGGGCTAGGATTAACGTCAGCCGTCCCGATTTGGCTCGAGCGTTGAAGTTG 645
Query 658 CCTAAGAAGAAAGACTTTGTTGTTACAGAGGAGGAGAGAGAACTTCTGGAAAACGATGAA 717
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 CCTATGAAGAAAGACTTTGTTGTTACAGAGGAGGAGAGAGAACTTCTGGAAAACGATGAA 705
Query 718 TCTGTTAGGTTTATTGATGAGATTCTTTCAACTTGGGTTCTATTGCAAAGAGATGATATG 777
|| ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||
Sbjct 706 TCGGTTAGGTTTATTGATGAGATTGTTTCAACTTGTGTTCTACTGCAAAGAGATGATATG 765
Query 778 TGGATTATGCCTGTAGAGATTGTTGAATGGACAAGGGATATAAAGCAAAAGCATTTGGAA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 TGGATTATGCCTGTAGAGATTGTTGAATGGACAAGGGATATAAAGCAAAAGCATTTGGAA 825
Query 838 AAGTTAGACTGGCCTAAATTGCTCTGGTTCATGGTTGAGAAAGAACTGAAAGCGGAGCCT 897
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 AAGTTAGACTGGCCCAAATTGCTCTGGTTCATGGTTGAGAAAGAACTGAAAGCGGAGCCT 885
Query 898 TTGCTTGGTGATTGtttttttGCTTCTCATCTGCAGCTGTTGATCAAAACACAGAAAGAA 957
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 886 CCGCTTGGTGATTGTTTTTTTGCTTCTCATCTGCAGCTGTTGATCAAATCACAGAAAGAA 945
Query 958 GATTTACTAAAGGAAAAATGTAAAGCGgatgatgagggggatgatgatgatgaCGACGAC 1017
||||| |||||||| |||||||| || |||||||||| ||||||||||||||| || |||
Sbjct 946 GATTTGCTAAAGGAGAAATGTAAGGCTGATGATGAGGAGGATGATGATGATGATGATGAC 1005
Query 1018 GATGTAAAGGAGGTTGATTTTATGGTAAAATCTCCGAAAGAAGATTGTTTGGAGGTTAAG 1077
||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 1006 GATGTAAAGGAGGTTGATTTTTTGGTAAAATCACCAAAAGAAGATTGTTTGGAGGTTAAG 1065
Query 1078 GAAGAAGATGCTGGTGCTGCAGATTCAGGAAAGGATGATGGTGCCATCGACTCGAAAGAA 1137
|||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 1066 GAAGAAGATGTTGGTGCTGCAGATTCAAGAAAGGATGATGGTGCTGTCGACTTGAAAGAA 1125
Query 1138 GACAAGTATGTGGAAGAACATATGATCGAATTGAATCTCGGGCAAGAGACTGTGTCAGAA 1197
|||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 1126 GACAAGTATGTGGAAGAACATATGCTCGAACTGAATCTCGGGCAAGAGACAGTGTCAGAA 1185
Query 1198 ATGGTCTCTGGGGAAGAGCGAGGTCCTGTTGAGGGACAGCCAATGGATGTTGAGGAAAAT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 ATGGTCTCTGGGGAAGAGCGAGGTCCTGTTGAGGGACAGCCAATGGATGTTGAGGAAAAT 1245
Query 1258 AAGAAAGAAGAGGATGAAAGGTGGGCATGGAATGAAGAGAC-C-CATGCTGGTTCTCATT 1315
|||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 1246 AAGAAAGAAGAGGATGAAAGGTGGGCATGGAATG--GAGACTCTCATGCTGGTTCTCATT 1303
Query 1316 TCCTTCGCCGTTGCAGTCTTAGTAGTGCTAGGGAGGGAGACGAAGATAATCATATTGAAG 1375
||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1304 TCCTTCGCCGTTGCAATCATAGTAGTGCCAGGGAGGGAGACGAAGATAATCATATAGAAG 1363
Query 1376 GATCCATGGAAATGGGAGAAGATGAGCCAATTGAAGATGTCGGGGAAGAGGA---TGAGG 1432
||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct 1364 GATCCATGGAAATGGGAGAAGATGAACCAATTGAAGATGTCGAGGAAGAGGAAACTGAGG 1423
Query 1433 AAGATACAGAAAAGCATGAAGAGGGGTTTCCtttttttCCAAATGGCGATTCCCTTCAGG 1492
||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct 1424 AAGATACAGAAAAGCATGAAGGGGGGTTTCCTTTTTTTCCAAATGGTGATTCCCTCCAGG 1483
Query 1493 GAGTTGGCCAAGAGAATCTCATGTTGGGGGATGCATCTCCGTTAGGTTATAACTCTGGGT 1552
|||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1484 GAGTTGGCCAAGGGAATCTCATGTTGGGAGATGCATCTCCGTTAGGTTACAACTCTGGGT 1543
Query 1553 TACAAATTCATGGCAATTCAATTGGTGGTGATTTCCTTGCTTCTAGGGTTGACATGCATA 1612
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1544 TACAAATTCATGGCAATTCAATTGGTGGTGATTTCCTTGCTTCTAGGGGTGAGATGCATA 1603
Query 1613 TGACTATGGGTTCAGGTAGTTCTTCTCTGTTCAGGAATGGCAATAACAAGAGGGAGATTG 1672
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1604 TGGCTATGGGTTCAGGTAGTTCTTCTCTGTTCGGGAATGGCAATAACAAGAGGGAGATTG 1663
Query 1673 AACACGAGAATCATATTTCTTATCATTCTCATAACCCCGGCAATAAGAGGTTGAGGACCG 1732
||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1664 AACACGAGAATGGTATTACTTATCATTCTCATAACCCCATTAATAAGAGGTTGAGGACCG 1723
Query 1733 AAGAACCTTCTTGGGATGAAAAACCACCCCCAGTTGACATGTGTTTGGATCAGATTGTGT 1792
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1724 AAGAACCCTCTTGGGATGAAAAACCACCCCCAGTTGACATGTGTTTGGATCAGATGGCGT 1783
Query 1793 ACTGGATTGAAAAAACTAGATTATCAAATGCTGAAAAAGACCGAGAGCGTGAACAATCTG 1852
||||| |||||| ||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct 1784 ACTGGGCGGAAAAAGCTAGATTGTCATTTGCTGAAAAAGATCGAGAGCGTGAACAATCTG 1843
Query 1853 TTATGAACCACCAGTATCTGATGAACGAACTACAAAGCAAGGCAGCAATGATTCAGGAAT 1912
|||| ||||| ||||| ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1844 TTATAAACCAGCAGTACCTGATGAACGAGCTACAAAGCAAGACAGCAATGATTCAGGAAT 1903
Query 1913 TGGAAAGAACCAAGTTTGAGGAGCAACAGAGAAAAGATATGATGATCTATAAGCTTGAGA 1972
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1904 TGGAAAGAACCAAGTTTGAGGAGCAACAGAGAAAAGATATAATGATCTATAAGCTTGAGA 1963
Query 1973 GTGAGCTTCGTATGATGACAAGTGTAGTAGAGGGTTATAGGAAGGCTTTGAAAGA-AACA 2031
|||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct 1964 GTGAGCTTCGTATGATGACAAGTGTAGTTGAGGGTTATAGGAAGGCTTTGAAA-ATAACA 2022
Query 2032 CAAAAGGCATCAAGAGAGCACAGAAAACGTTGCCCTTTGCGTGATGAGAAACCGGTCTAC 2091
|||||||| ||||||||||||||||||||||||||||| |||||||| |||| || |||
Sbjct 2023 CAAAAGGCGTCAAGAGAGCACAGAAAACGTTGCCCTTTACGTGATGATAAACAAGTTTAC 2082
Query 2092 AAGGATGTCAAAGGTTCTGGAGGTTTAGTCCTGTGCACTACTGAAATTGAAAAGCTGAGA 2151
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2083 ATGGATGTCAAAGGTTCTGGAGGTTTAGTCCTGAGCACTACTGAAATTGAAAAGCTGAGA 2142
Query 2152 TTGAAGCAAGAAGAGGAAGATAGAATGACA-CGAACTCTAG-TAGAAAGACAGATTGAGG 2209
|||||||||||||||||||| || ||| || ||| ||||| || ||||||||||||| |
Sbjct 2143 TTGAAGCAAGAAGAGGAAGACAGGATG-CAACGAGTTCTAGCTA-AAAGACAGATTGACG 2200
Query 2210 ACTTTGAA-AGTCAGTGGCTTAATAAATTTGAAGAACACATGGAGACAGTAGAATTGCTA 2268
| |||||| | | | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2201 ATTTTGAACA-TAACTGGCTTAATAAATTTGAAGAACACATGGAGGCAGTAGAATTGCTG 2259
Query 2269 AACGAGAGATTCG-TCGAGAATGAAAATGAAGTGAAGATACT-GAGAGAAACACTTTCGG 2326
||||||||||| | |||||||||| ||||||||||||| || |||||||||||||||||
Sbjct 2260 AACGAGAGATT-GATCGAGAATGAGGATGAAGTGAAGAT-CTTGAGAGAAACACTTTCGG 2317
Query 2327 AAAGCAAGAATCAT-GAGACATCTGAAGTTGCTGCTGCTATAGAAGAAACT---ACAGAA 2382
||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 2318 AAAGCAAGAAT-ATTGAGACATCTGAAGTTGCTGCTGCTATGGAAGAAACTGCTACAGAA 2376
Query 2383 GAAACTTGA 2391
||||| |||
Sbjct 2377 GAAACATGA 2385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118724288925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5