BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486269
Length=767
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58170.1 | Symbols: ATBS14A, ATBET11, BET11, BS14A | BET1P/S... 1061 0.0
> AT3G58170.1 | Symbols: ATBS14A, ATBET11, BET11, BS14A | BET1P/SFT1P-like
protein 14A | chr3:21542359-21543974 REVERSE LENGTH=841
Length=841
Score = 1061 bits (574), Expect = 0.0
Identities = 729/797 (91%), Gaps = 38/797 (5%)
Strand=Plus/Plus
Query 1 TGTTGATTCGCTTAAGAACGATAAACACAGAGC-TTC---TCTTTCGACAAATCAACCGT 56
||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 25 TGTTGATTCGCTTAAGAACGATAAACACAGAGCTTTCTGTTCTTTCGACATATCAACCGT 84
Query 57 TTCCTTGCTCAATTTGCGTTCGTTGTTGAAACCATAGACCCAGGTG----GT-G--AA-T 108
|||||| || ||||||||||||||| |||||||||||| ||||||| | | ||
Sbjct 85 TTCCTTCCTTAATTTGCGTTCGTTG-TGAAACCATAGATCCAGGTGAATTCTGGAAAACA 143
Query 109 TC-T---G-G-AA---A-ACATC-TT-GA--AGCGAAATCG--AATTCGATTGATCGATG 152
|| | | | || | ||||| || || | | ||| || |||||||||||||||||
Sbjct 144 TCTTGAAGCGAAATCGAGACATCGTTGGAGGATC-AAAACGTTAATTCGATTGATCGATG 202
Query 153 AATCCTAGAAGGGAGCCGCGTGGTGGTAGAAGTTCTCTCTTTGATGGCATCGAAGAGGGA 212
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 AATCCTAGAAGGGAGCCTCGTGGTGGTAGAAGTTCTCTCTTTGATGGCATCGAAGAGGGA 262
Query 213 GGAATTAGAGCTGCTTCTTCTTACTCTCATGAAATCAATGAACATGAGAATGAGCGTGCC 272
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 263 GGAATTAGAGCTGCTTCTTCTTACTCTCATGAGATCAATGAACATGAGAATGAGCGTGCC 322
Query 273 TTGGAAGGATTGCAAGATAGAGTCATTCTCTTAAAACGACTATCTGGCGATATAAATGAA 332
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 TTGGAGGGATTGCAAGATAGAGTCATTCTCTTAAAACGACTATCTGGCGATATAAATGAA 382
Query 333 GAGGTCGATACTCATAACCGCATGCTTGACAGAATGGGCAATGATATGGATTCATCAAGG 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 GAGGTCGATACTCATAACCGCATGCTTGACAGAATGGGCAATGATATGGATTCATCAAGG 442
Query 393 GGATTTCTCTCAGGAACCATGGACCGGTTTAAAACGGTATTTGAGACTAAGTCAAGTCGA 452
|||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||
Sbjct 443 GGATTTCTCTCAGGAACCATGGACCGCTTTAAAACGGTGTTTGAGACAAAGTCAAGCCGA 502
Query 453 AGAATGCTGACGCTCGTGGCATCGTTCGTTGGTTTATTTCTAGTCATATACTATCTTACT 512
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 503 AGAATGCTGACGCTCGTGGCATCGTTTGTTGGTTTATTTCTAGTCATATACTATCTTACT 562
Query 513 CGGTAAAATTGGCAAACCCGGAGTATTCCTGAACATCCATCCATGATCTCATGATATTCC 572
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 563 CGGTAAAATTGGCAAACCCGGAGTATTCCTGAACATTCATCCATGATCTCATGATATTCC 622
Query 573 CAGTCTCTCTCTGTTGGCTCCTACGATCTAATTATC-CTCAATCTGTGTAATGAATATAT 631
||||||||||||||||||||||||||||||||| || | ||| | ||||||||| | |||
Sbjct 623 CAGTCTCTCTCTGTTGGCTCCTACGATCTAATTGTCAC-CAACCAGTGTAATGA-TGTAT 680
Query 632 GCCTCCAGTGTTATATAGTATGATCCAGTGCTTGGGATGAGGACACAAATTTCATAAAAC 691
||||||||||||||| || || || ||||||||||||||||||||| |||||||||||
Sbjct 681 GCCTCCAGTGTTATA--GTGTGCTCTAGTGCTTGGGATGAGGACACA--TTTCATAAAAC 736
Query 692 TTATAAAAAGTTTCATATGTT-GGATTTTATAGAGCGTTTTACTTCCTTTATGTATAAAT 750
||||||||||||| |||| || ||||||||||||| ||||||||||||||||||||||||
Sbjct 737 TTATAAAAAGTTTAATATATTTGGATTTTATAGAGTGTTTTACTTCCTTTATGTATAAAT 796
Query 751 AACGACGGTTCAGATTT 767
| |||| ||||| ||||
Sbjct 797 AGCGACTGTTCAAATTT 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37273737074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5