BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486271
Length=904
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58190.1 | Symbols: LBD29, ASL16 | lateral organ boundaries-... 1375 0.0
AT2G42440.1 | Symbols: | Lateral organ boundaries (LOB) domain... 401 5e-111
> AT3G58190.1 | Symbols: LBD29, ASL16 | lateral organ boundaries-domain
29 | chr3:21548484-21549558 REVERSE LENGTH=959
Length=959
Score = 1375 bits (744), Expect = 0.0
Identities = 870/926 (94%), Gaps = 28/926 (3%)
Strand=Plus/Plus
Query 1 AAAATTAAATTCGACCTTTAAAATCAAGAATCGTCACAACACCATCATCATCATGAGTAG 60
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 19 AAAATTAAATTCGACCTTTAATATCAAGAACCGTCACAACACCATCATCATCATGACTAG 78
Query 61 CTCCAGCTCTAGCTCTGGCTCTCCTTGTGGTGCTTGTAAGTTCCTTAGGAGGAAATGTGC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 TTCCAGCTCTAGCTCTGGCTCTCCTTGTGGTGCTTGTAAGTTCCTTAGGAGGAAATGTGC 138
Query 121 AAAGGGATGTGTGTTTGCTCCATACTTTTGTCATGAACAAGGAGCTTCACACTTTGCAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 AAAGGGATGTGTGTTTGCTCCATACTTTTGTCATGAACAAGGAGCTTCACACTTTGCAGC 198
Query 181 CATCCACAAGGTCTTTGGAGCTAGCAATGCTTCTAAGTTGCTCTCTCATCTTCCCATTAG 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 CATTCACAAGGTCTTTGGAGCTAGCAATGCTTCTAAGTTGCTCTCTCATCTTCCCATTAG 258
Query 241 CGATCGCTGTGAAGCCGCTATTACAATCTCTTATGAAGCTCAAGCTAGGCTTCAAGATCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 CGATCGCTGTGAAGCCGCTATTACAATCTCTTATGAAGCTCAAGCTAGGCTTCAAGATCC 318
Query 301 CATCTATGGCTGCGTTTCTCATATCTTTGCTCTCCAGCAACAGGTTGCGAATTTACAAGC 360
|||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 319 CATCTATGGCTGTGTTTCTCATATCTTTGCTCTCCAACAACAGGTTGTGAATTTACAAGC 378
Query 361 AGAACTTGAGATTCTAAAGCAACAAGCAGCACAAAGCATGATTTTTGCTGATTCACCAAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 AGAACTTGAGATTCTAAAGCAACAAGCAGCACAAAGCATGATTTTTGCTGATTCACCAAC 438
Query 421 ATCAGAAAACCCTAATAGTTACTATGGAGACACTACTAAGGCTCCTTGTCATCATGATCT 480
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 439 ATCAGAAAACCCTAATAGTTACTATGGAGACACTACTAAGGCTCCTTATCATCATGATCA 498
Query 481 TCAAAATATTTATTATCATCAAGATCAGAGCCATTTGGGTTACCAAACCGGAAGTTCAGG 540
||||||||||||| ||||||| ||||||| |||||||| ||||||||| |||||||| ||
Sbjct 499 TCAAAATATTTATCATCATCATGATCAGACCCATTTGGTTTACCAAACTGGAAGTTCTGG 558
Query 541 GACGGTTCAACACGGGGATGCCACGGAGAGTAGTTACCACAACGAAACCTCCTCAGGCAT 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 559 GACGGTTCAACACGGGGATGCCACAGAGAGTAGTTACCACAACGAAACCTCCTCAGGCAT 618
Query 601 CGGAGAATTCTCCATCTACTCTGACTTGGAACAACACTTGAACACTTTCAATCAAGATCA 660
|| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 619 GGGGGAATTCTCCATCTACTCTGACTTGGAACAACACCTGAACACTTTCAATCAGGATCA 678
Query 661 TCTCAAAGAGCTGCAATCAGCAAGTTTTGGCTACATCTCCTTCTCGTGATATGGTTCTAT 720
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 679 TCTCAAAGAGCTTCAATCAGCAAATTTTGGCTACATCTCCTTCTCGTGATATGGTTCTAT 738
Query 721 CAAGAC-ATGGGTTGATTCTTATCAATATCCGATCtatatacaatatatatagcttatat 779
||||| ||||||||||||||||| |||||||||||||||| | |||||| ||||||||
Sbjct 739 CAAGAATATGGGTTGATTCTTATCTATATCCGATCTATATA-A-TATATA--GCTTATAT 794
Query 780 ataATGTTTGAAGATTTTT-GATGGTTTTAGTT---A--G--------C--T--C--AAA 819
||||||||||||||||||| ||||||||||||| | | | | | |||
Sbjct 795 ATAATGTTTGAAGATTTTTTGATGGTTTTAGTTTCGATTGAAAATGTTCCGTAGCTCAAA 854
Query 820 GAACCGG-TGTTGTATTCATAAATAAAAAGTACTAGATGCCCTAGAAATATATAAAGATA 878
||||||| | ||||||| |||||||||| ||| |||||||||||||||||||||||||||
Sbjct 855 GAACCGGAT-TTGTATTTATAAATAAAA-GTAGTAGATGCCCTAGAAATATATAAAGATA 912
Query 879 TATATTTACATCCTCAAGATCTTTTT 904
|||||||||||||||||||| |||||
Sbjct 913 TATATTTACATCCTCAAGATGTTTTT 938
> AT2G42440.1 | Symbols: | Lateral organ boundaries (LOB) domain
family protein | chr2:17668701-17669817 REVERSE LENGTH=989
Length=989
Score = 401 bits (217), Expect = 5e-111
Identities = 334/389 (86%), Gaps = 13/389 (3%)
Strand=Plus/Plus
Query 72 GCTCTGGCTCTCCTTGTGGTGCTTGTAAGTTCCTT-AGGAGGAAATGTGCAAAGGGATGT 130
||||||||||||||||||| ||||||||||| || || |||| ||||| ||| ||||||
Sbjct 75 GCTCTGGCTCTCCTTGTGGAGCTTGTAAGTT-TTTAAGAAGGAGATGTGTAAAAGGATGT 133
Query 131 GTGTTTGCTCCATACTTTTGTCATGAACAAGGAGCTTCACACTTTGCAGCCATCCA-CAA 189
|||||||| ||||||||||| ||||||||||||||||| || |||||||| || || |||
Sbjct 134 GTGTTTGCCCCATACTTTTGCCATGAACAAGGAGCTTCCCATTTTGCAGCAATTCACCAA 193
Query 190 GGTCTTTGGAGCTAGCAATGCTTCTAAGTTGCTCTCTCATCTTCCCAT-TAGCGATCG-C 247
|| |||||||| |||||||||||||| |||||||||||||||||||| || ||||| |
Sbjct 194 -GTGTTTGGAGCCAGCAATGCTTCTAAATTGCTCTCTCATCTTCCCATGGAG-GATCGAC 251
Query 248 TGTGAAGCCGCTATTACAATCTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCCATCTAT 307
|||||||||||| |||||||| |||||||||||||||| | | |||||| |||||||||
Sbjct 252 -GTGAAGCCGCTACTACAATCTATTATGAAGCTCAAGCTCGCCGTCAAGACCCCATCTAT 310
Query 308 GGCTGCGTTTCTCATATCTTTGCTCTCCAGCAACAGGTTGCGAATTTACAAGCAGAACTT 367
||||||||||||||||||||| | ||||| ||||| |||| |||||||||| || | ||
Sbjct 311 GGCTGCGTTTCTCATATCTTTTCCCTCCAACAACAAGTTGTGAATTTACAAACACAGCTA 370
Query 368 GAGATTCTAAAGCAACAAGCAGCACAAAGCATGATTTTTGCTGATTCACCAAC-ATCAGA 426
||||||||||||||||||||| ||||||||||||| | |||||| || | || |||
Sbjct 371 GAGATTCTAAAGCAACAAGCAACACAAAGCATGATGGCTATTGATTCTCCCTCCAT-AGA 429
Query 427 AAACCCTAATAGTTACTATGGAGACACTA 455
|||||||||| | ||||| ||||||||
Sbjct 430 AAACCCTAAT--T-ACTATCAAGACACTA 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44155815213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5