BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486272
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58200.1 | Symbols: | TRAF-like family protein | chr3:21559... 905 0.0
AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564... 279 3e-74
AT3G58440.1 | Symbols: | TRAF-like superfamily protein | chr3:... 165 7e-40
> AT3G58200.1 | Symbols: | TRAF-like family protein | chr3:21559893-21561465
REVERSE LENGTH=1260
Length=1260
Score = 905 bits (490), Expect = 0.0
Identities = 579/621 (93%), Gaps = 9/621 (1%)
Strand=Plus/Plus
Query 368 GGGTTTCTGGTGAATGATGAGGTCAAAATTGTTGTGGAGGTTGATGTTGTTGAAGTTATT 427
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct 462 GGGTTTCTGGTGAATGAAGAGGTCAAAATTGTTGTGGAGGTTGATGTTGTTGAAGCTCTT 521
Query 428 GGAAAATTAGAGGAATCTGAAGAGGCAACACAACCTCTGAAAAAGGTAAAGCTAGAGGCT 487
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GGCAAATTAGAGGAATCTGAAGAGGCAACACAACCTCTGAAAAAGGTAAAGCTAGAGGCT 581
Query 488 TTTGTGGAATCGAAAGATATGCTTAAGGAAACTTCATCAGTAAAGGAAGAAATCATTGAT 547
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TTTGTGGAATCGAAAGGTTTGCTTAAGGAAACTTCATCAGTAAAGGAAGAAATCATTGAT 641
Query 548 GTCAATGGGTTTCATGTTCTTCCTTCCCAGGTGGAATTTGTTAGCCCTGTTTTTGAAAGA 607
||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 642 GTCAATGTGTTTCATGTTCTTCCTTCCCAGGTGGAATTTGTAAGCCGTGTTTTTGAAAGA 701
Query 608 TACCCAGAAATTGCATCAGTATTCCAGGCAAAGAAGCAACATTTGAGAACCGCATGCATG 667
|||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||
Sbjct 702 TACCCAGAAATTGCATCAATATTCCAAGCAAAGAAGCAACATTTGAGAACAGCATGCATG 761
Query 668 TATGTCCTCCTCAGCCTAATCGAGACACTGTGCCAGTCACTGGAAGAGCTCTGCAGTGAT 727
||||||||||| || || || |||||||||||| |||||||||||||||||| || ||||
Sbjct 762 TATGTCCTCCTAAGTCTTATTGAGACACTGTGCAAGTCACTGGAAGAGCTCTCCAATGAT 821
Query 728 GATCTTGTGGGAGGTGACAATGCATTACAATACCTGAAATTTTCGGGCTTTAAGGTTGAT 787
|||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 822 GATCTTGTGGGAGGAGACAATGCGTTACAATACCTGAAGTTTTCTGGCTTTAAGGTTGAT 881
Query 788 TGGTTGGAGAAGAAGCTGGAGGAAATTAAGGTAAAGAAGAAGGAAGAACAAATTGGTGAA 847
|||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||
Sbjct 882 TGGTTGGAGAAGAAGCTGGAGGAAGTTAAGGAAAAGAAGAAGGAAGAACAGATTGGTGAA 941
Query 848 AGTCGTATGCAAGAATTAGAGGAAGAATTGAAGCTTTTTAAGAAGTGCTCAGATATAGAA 907
| ||||||||||||| | || ||| || |||| | |||||||||||||||||||
Sbjct 942 ACTCGTATGCAAGAAAT-GA--AAGTTTTTAAGC-----A-GAAGTGCTCAGATATAGAA 992
Query 908 GCTCTTATGGAGACAGAGAAGACAAAGTTGTTGGTCACCAGAGGTTCTCCTCTAACGTTG 967
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 993 GCTCTTATGGAGAGAGAGAAGTCAAAGTTGTTGGTCACCAGAGGTTCTCCTCTAACGTTG 1052
Query 968 GATGATGTTCTTTGAAGACTT 988
|||||||||||||||||||||
Sbjct 1053 GATGATGTTCTTTGAAGACTT 1073
Score = 564 bits (305), Expect = 6e-160
Identities = 353/376 (94%), Gaps = 4/376 (1%)
Strand=Plus/Plus
Query 1 TTTGCTTACTATATTTGTGTGCCACTTGGGTTCTAGGGTTCCACGCCATCTCAATG-TGC 59
|||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 18 TTTGGTTACTATACTTGTGTGCCACTTGGGTTCTAGGGTTCCACGCCATCTGAATGAT-C 76
Query 60 TGACT-GTTC-AATTGCAAAGTAGTCTTAGAATGGGGGAAGAAGCTGATAACAAGTTCAG 117
||||| |||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 77 TGACTCGTTCGAATTGCAAAGTAGTCTTAGAATGGAGAAAGAAGCTGATAACAAGTTCAG 136
Query 118 ATGGGTGATTAAAGAGCTCTCATCTCTGGGATCCGAGAGAGTCTTTTCTGACATATTTGT 177
||||||||||||| | |||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 137 ATGGGTGATTAAAAATTTCTCATCTTTGGGATCCGAGAGAGTCTTTTCTGATATATTCGT 196
Query 178 GGTCGGTTCTTGCAAATGGCGTCTTATGGCCTATCCCAAAGGAGTCAGGGATGATAGATG 237
|| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 197 AGTTGGTTCTTGCAAATGGCGTCTTATGGCCTATCCCAAAGGAGTTAGGGATAATAGATG 256
Query 238 TTTCTCTCTGTTTCTGGTGGTTGCTGATTTCAAAACTTTGCCTTGTGGCTGGAAACGACA 297
|||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 257 TTTCTCTCTGTTTCTGGTTGTTACTGATTTCAAAACTTTGCCTTGTGACTGGAAACGACA 316
Query 298 CACAAGATTGCGCCTAAATGTTGTTAATCAACTCTCGGAAGAACTTTCCATACTGAAAGA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 CACAAGATTGCGCCTAAATGTTGTTAATCAACTCTCGGAAGAACTTTCCATACTGAAAGA 376
Query 358 AACACAAATGGGGTTT 373
|||||||||| |||||
Sbjct 377 AACACAAATGTGGTTT 392
> AT3G58220.2 | Symbols: | TRAF-like family protein | chr3:21564450-21566482
REVERSE LENGTH=1636
Length=1636
Score = 279 bits (151), Expect = 3e-74
Identities = 369/472 (78%), Gaps = 24/472 (5%)
Strand=Plus/Plus
Query 530 AAG-GAA-GAAATCATTGATGTCAATGGGTTTCATGTTCTTCCTTCCCAGGTGGA-ATTT 586
||| ||| |||| ||| ||| ||||||||||||| ||||||||||| ||||| || | ||
Sbjct 955 AAGTGAAGGAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GACACTT 1013
Query 587 GTTAGCCCTGTTTTTGAAAGATACCCAGAAATTGCATCAGTATTCCAGGCAAAGAAGCAA 646
|| |||| | |||| ||| ||||||||| ||||||| || |||| | |||||||| | |
Sbjct 1014 GTGAGCCGTATTTTAAAAAAATACCCAGACATTGCATTAGGATTCAATGCAAAGAACCGA 1073
Query 647 CATTTGAGAACCGCATGCATGTATGTCCTCCTCAGCCTAATCGAGACACTGTGCCAGTCA 706
||| |||| || ||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1074 CATCTGAGGACAGCATGCATGAATGTCCTCATCAGCCTAATCGAGACACTGTGCCAGTCA 1133
Query 707 CTGGAAGAGCTCTGCAGT-GATGATCTTG-TGGGAGGTGACAATGCATTACAATACCTGA 764
| | ||||||| ||| || ||| | | || || ||||||||| || |||| ||
Sbjct 1134 CCACAGGAGCTCT-CAGACGAAGATATGGATGA-AGCAGACAATGCACTAGTATACGTGC 1191
Query 765 AATTTTCGGGCTTTAAGGTTGATTGGTTGGAGAAGAAGCTGGAGGAAATTAAGGTAAAGA 824
|| | | ||||||||||| ||||||||||| ||||||||| ||||| | || | |||||
Sbjct 1192 AAGATGCAGGCTTTAAGGTGGATTGGTTGGACAAGAAGCTGAAGGAAGTAAAAGAAAAGA 1251
Query 825 A-GAAGGAAGAACAAATTGGTGAA-AGTCGTATGCAAGAATTAGAGGAAGAATTGAAGCT 882
| | || ||| || | |||| || | || || |||||||||||||| |||||||||
Sbjct 1252 AAGT-GGTAGAGCAGACTGGT-AAGACCCGGATTCAAGAATTAGAGGAGGAATTGAAGGA 1309
Query 883 TTTTAAG-A-A-GTGCTCAGATATAGAAGCTCTTATGGAGACAGAGAAGACAAA-GTTGT 938
|||||| | | ||||| ||| | |||||||| |||| | ||||||| |||| || ||
Sbjct 1310 ATTTAAGCAGAAGTGCTTAGACAGGGAAGCTCTGCTGGAAAAAGAGAAGGCAAAAGT-GT 1368
Query 939 TGG-T-CACCAGAGGTTCTCCTCTAACGTTGGATGATGTTCTTTGAAGACTT 988
||| | | || ||| ||||| | ||| ||||||||| || | ||| |||||
Sbjct 1369 TGGCTGC-CC-GAGCTTCTC-T--AACTTTGGATGATTTTGTCTGATGACTT 1415
> AT3G58440.1 | Symbols: | TRAF-like superfamily protein | chr3:21618446-21621249
REVERSE LENGTH=1806
Length=1806
Score = 165 bits (89), Expect = 7e-40
Identities = 262/341 (77%), Gaps = 29/341 (9%)
Strand=Plus/Plus
Query 507 TGCTTAAGGAAACTTC-ATCAGTA-AAGGAAGAAATCA-TTGATGTCAATGGGTTTCAT- 562
|||||| ||| | ||| ||||| | || | |||| || | ||| ||||||||||| |
Sbjct 848 TGCTTATGGAGA-TTCAATCAG-ATAA-G--GAAA-CAGTGGATATCAATGGGTTT-GTG 900
Query 563 GTTCTTCCTTCCCAGGTGGAATTTGTTAGCCCTGTTTTTGAAAGATACCCAGAAAT-TGC 621
||| || ||||| ||| ||||| ||| || | | | | |||||| ||||||| || | |
Sbjct 901 GTTGTTTCTTCCAAGGCGGAATCTGTGAGACGTATACTCGAAAGACACCCAGACATAT-C 959
Query 622 A-T-CAGTATTCCAGGCAAAGAAGCAACATTTGA-GAACCGCATGCATGTATGTCCTCCT 678
| | ||| ||| || |||||| ||||| ||| ||| |||||| ||| || |||| ||
Sbjct 960 AGTGGAGT-TTCGTGG-AAAGAACCAACAACTGAGGAA-CGCATGTATGAATTTCCTGCT 1016
Query 679 CAGCCTAATCGAGAC-ACTGTGCCAGTCACTGGAAGAGCTCTGC-AGTGATGATCTTGTG 736
|||| ||||||| || | |||||||||||||||| ||||||| | | ||| |||||||||
Sbjct 1017 CAGCTTAATCGAAACGA-TGTGCCAGTCACTGGAGGAGCTCT-CGAATGAAGATCTTGTG 1074
Query 737 GGAGGTGACAAT-GCATT-ACAATACCTGAAATTTTC-GGGCTTTAAGGTTGATTGGTTG 793
| || ||| | || || || |||| ||| | | | ||| ||||||||||||||||||
Sbjct 1075 GAAGCAGAC-GTAGCGTTGAC-ATACTTGAGAGATGCAGGG-TTTAAGGTTGATTGGTTG 1131
Query 794 GAGAAGAAGCTGGAGGAAATTAAGGTAAAGAAGAAGGAAGA 834
|||||||||||||| || | |||| ||||||| |||||||
Sbjct 1132 GAGAAGAAGCTGGACCAACTAAAGGAAAAGAAGGAGGAAGA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48375483561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5