BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486273
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58210.1 | Symbols: | TRAF-like family protein | chr3:21562... 1469 0.0
> AT3G58210.1 | Symbols: | TRAF-like family protein | chr3:21562442-21564067
REVERSE LENGTH=1196
Length=1196
Score = 1469 bits (795), Expect = 0.0
Identities = 1076/1204 (89%), Gaps = 49/1204 (4%)
Strand=Plus/Plus
Query 1 ATGGGCAATCTCGTTGATAACAAGTTCACATGGGTGATTCAAAACTTCTCGTCTTCGCAA 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGAAATCTCGTTGATAACAAGTTCACATGGGTGATTCAAAACTTCTCGTCTTCCCAA 60
Query 61 TCTAGTGCCATTCTTTCTAATCAATTCGTTGTTGGTGGCTGCAAGTGGCATCTTCTTGCC 120
|| || | | | | |||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 61 TCAAGGGTCGTCCCTTCTAATCAATTCGTTATTGGTGGCTGCAAGTGGCGTCTTCTTGTC 120
Query 121 TATCCCGAGGGATTAAATAAGTCTGATGATCATTTCTCGCTGTTTCTGGAAGTGGCTGAT 180
||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 121 TATCCTGAGGGATTCAATAAGTCTGGTGATCATTTGTCGCTGTTTCTGGAAGTGGCTGAT 180
Query 181 CATAAATCATTGCCACATGGATGGGGTAGACATGCACGTTATCGCTTAACTACTGTTAAT 240
| || ||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||
Sbjct 181 CCTAGATCATTGCCACCTGGATGGAGTAGACATGCACGTTATCTTTTAACTATTGTTAAT 240
Query 241 CAACATTCTGATAAAATCTCCAAACGAACCGAAGCAAGC-AAGTGGTTTGATCAAAAGAC 299
|||||||||||||||||||| ||||||| |||||||| | ||||||||| |||||||||
Sbjct 241 CAACATTCTGATAAAATCTCAAAACGAAACGAAGCAA-CTAAGTGGTTTAATCAAAAGAT 299
Query 300 TCCAGGTTGGGGTTTGTCAGGAATGCTTCCCCTTAGTAAACTTCATGCCAAGGATGGTGG 359
|||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||||||||
Sbjct 300 TCCAGGTTGGGGTTTGTCAGCAATGATTCCCCTTACTAAACTTCATGCCAAAGATGGTGG 359
Query 360 GTTTCTTGTGAACGATGAACTCAAGATTGTTGCTGAGGTCGATGTTATTGAAGTTATTGG 419
||||||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 360 ATTTCTTGTGAATGATGAACTCAAGATAGTTGCTGAGGTAAATGTTCTTGAAGTTATTGG 419
Query 420 CAAACTAGATGTATCCGG-GGAATCTGAAGAGG------AA---ACCCAACCTATGAAAA 469
||||||||||||| |||| |||||||||||||| || ||||||||||||||||
Sbjct 420 CAAACTAGATGTA-CCGGAGGAATCTGAAGAGGAAACCCAAGTTACCCAACCTATGAAAA 478
Query 470 AGATAAAGGTAGATTATGATCA--T---G-----TG----GA-G----AC----C-CCAC 505
|| ||||||||||||||||||| | | || || | || | ||||
Sbjct 479 AGGTAAAGGTAGATTATGATCATGTGGAGTCTAATGATTTGATGATCAACGAGACTCCAC 538
Query 506 CGGTTAGTGAACTCATGGACGTCAATGGTTTTCAAGTCCTTCCTTCCCAGGTGGCTTTTG 565
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 539 CGGTTAGTGAACTCATGGACGTCAATGGTTTTCAAGTTCTTCCTTCCCAGGTGGATTTTG 598
Query 566 TGAAGTGTATTTTTGCAAAACATCCAGACATTGCAAAAGAGTTCCGTCCAAAGAACCCAC 625
||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 TGAAGCGTATTTTTGAAAAACATCCAGACATTGCAAAAGATTTCCGTCCAAAGAACCCAC 658
Query 626 ATCTGAGGAAAGCATGCATGACTTTCTTGCTCAGCTTGATAGAGACATTGTGCCAACCGC 685
||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| |
Sbjct 659 ATCTGAGGAAAGCATGCATGAATTTCTTGCTCAGCTTAATGGAGACATTGTGCCAACCAC 718
Query 686 CTCAGAAGCTATCCAATGAAGATCTTGTGGAAGCAAACAATGCACTGACATACGTGAAAG 745
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 719 CTCAGAAGCTATCAAATGAAGATCTTGTGGAAGCAGACAATGCACTGACATACGTGAAAG 778
Query 746 TTTCGGGCTTTAAAGTGGATTGGTTGGAGAAAAAGCTAGAGGAAGTGAAGAAAAAGAAGG 805
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTCGGGGTTTAAAGTGGATTGGTTGGAGAAAAAGCTAGAGGAAGTGAAGAAAAAGAAGG 838
Query 806 AGGAAGAACAAACTGGTGTGACTCGGATTCAGGAACTAGAGGAGGGATTGAAGGACTATA 865
|||||||||| ||||||| | |||| ||||| ||||||||||||| ||||||||| | ||
Sbjct 839 AGGAAGAACAGACTGGTGAGGCTCGAATTCAAGAACTAGAGGAGGAATTGAAGGAATTTA 898
Query 866 AGCAGAAGTGCTTAAACATGGAAGCTATGTTGGAGAAAGAGAAGGCAAAGCTGTTGGCCG 925
|||||||||||||| | | |||||||||| |||||||||| ||||||||| |||| | |
Sbjct 899 AGCAGAAGTGCTTAGATAGGGAAGCTATGCTGGAGAAAGAAAAGGCAAAGGTGTTAACAG 958
Query 926 CTAGAGCTTCTCTAACATTGGATGATGTTATTTAATGACTTT-GGCATGTTCTGATGTTT 984
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 959 CTAGAGCTCCTCTAACATTGGATGATGTTATTTAATGACTTTTGGCATGTTCTGGTCTTT 1018
Query 985 GTTTGTTTGTGTGTTCGTTTCAGTCTATGTTTCGAAATTGGCTTCCTCTTAAAACTTAGG 1044
|||||||||| ||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1019 GTTTGTTTGTTTGTTCGTTTGAGTCTATGTTTCGAAATTGGAGTCTTCTTAAAACTTAG- 1077
Query 1045 A-AGCTAGAGAGACTTTATGTGTCTTCCtttttttttGTACCT-TGGAGAGGAATGGCTA 1102
| ||||||| |||| | |||||||||||||| ||||||||||| ||| || | || |||
Sbjct 1078 ATAGCTAGACAGACCT-ATGTGTCTTCCTTTCTTTTTGTACCTATGG-GA--A-TGACTA 1132
Query 1103 ATACTGTACAAAGGTTGATG---CCTTCATTTTCAGCTATCAAATCAATAGGGAAAACCA 1159
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1133 ATACTGTACAAAGGTTGATGATGCCTTCAATTTCAGCTATCAAATCAATAGGGAAAACCA 1192
Query 1160 GTTT 1163
||||
Sbjct 1193 GTTT 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57078019665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5