BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486280
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58270.1 | Symbols: | Arabidopsis phospholipase-like protei... 1954 0.0
AT3G44790.1 | Symbols: | TRAF-like family protein | chr3:16328... 95.3 1e-18
AT3G58240.1 | Symbols: | TRAF-like superfamily protein | chr3:... 76.8 5e-13
AT3G29580.1 | Symbols: | Arabidopsis phospholipase-like protei... 56.5 6e-07
> AT3G58270.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) with TRAF-like domain | chr3:21575887-21577845
REVERSE LENGTH=1249
Length=1249
Score = 1954 bits (1058), Expect = 0.0
Identities = 1188/1251 (95%), Gaps = 7/1251 (1%)
Strand=Plus/Plus
Query 1 ATCAAAGAAGTTTCCTTTAGAGATTTTTATCTGATTCTGTCTTCGTCTATAAAGCTTGAT 60
|||||||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||
Sbjct 1 ATCAAAGAAGTTTCCTTTAGAGCTTTTTCTCTCATTCTGTCTTCGTCTAAAAAGCTTGAT 60
Query 61 TGCAGAGAACAATGGGGAAAGAAGTTGATAACAAGTTCACTTGGGTGATTAAGAATTTCT 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGCAGATAACAATGGGGAAAGAAGTTGATAACAAGTTCACTTGGGTGATTAAGAATTTCT 120
Query 121 CCTCTCAGCAATCCA-CAAAAATTTATTCGGATGAATTCTTCGTCGATGGCTGCAAATGG 179
|||||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 121 CCTCTCAGCAGTCCAGGAAAAA-TTATTCTGATGAATTCTTCGTCGATGGCTGCAAATGG 179
Query 180 CGTCTTCTGGCCTTTCCTAAAGGAAATGGTGTTGAGAAGTTGTCACTGTATCTGGCCGTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGTCTTCTGGCCTTTCCTAAAGGAAATGGTGTTGAGAAGTTGTCACTGTATCTGGCCGTT 239
Query 240 GCTGGTGGTGAATTTTTACCTGATGGATGGAGAAGACACGCAGATATCCACTTAAGTGTA 299
|||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||
Sbjct 240 GCTGGTAGTGAATTTTTACCTGATGGATGGAGAAGACACGCATATTTCCACTTCAGTGTA 299
Query 300 GTGAATCAACTCTCTGAAGAACTCTCTCTAA-CTAGAGAAACAGAACATTTGTTTGATGC 358
||||||||||||||||| |||||||||| || ||||||||||| || ||| |||||||||
Sbjct 300 GTGAATCAACTCTCTGATGAACTCTCTC-AAGCTAGAGAAACAAAAAATTGGTTTGATGC 358
Query 359 GAGTACTTGCGACTGGGGTTTTGCATCAATGTTTTCCCTTAAAAAACTTCATGACAAAGA 418
||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 359 GAGTACTAGTGACTGGGGTTTTACATCAATGCTTTCCCTTAAAAAACTTCATGACAAAGA 418
Query 419 TGGTGGTTTCCTGGTTAATGGAGAGCTCAAGATTATTGTCGAGGTATCTGTTCTTGAAGT 478
|||||| ||||||||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 419 TGGTGGATTCCTGGTTAATGGAGAGCTCAAGATTGTTGTCGATGTTTCTGTTCTTGAAGT 478
Query 479 TATTGGCAAATTAGACGTACCAGAGGAATGTGAAGAGAC-A--ACCAAATCTCTAAGCAA 535
||||||||||||||||||||||| ||||| ||||||||| | |||||| |||||||| |
Sbjct 479 TATTGGCAAATTAGACGTACCAGTGGAATCTGAAGAGACAACCACCAAAGCTCTAAGCGA 538
Query 536 GGTTGACGATAATGACGTACCAGAGGAATCTGAAGAGACGACCGAAGCTCTAAGCAAGGT 595
| | || || ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 539 GCTAGAGGAAAATGACGTACCAGAGGAATCTGAAGAGACAACTAAAGCTCTAAGCAAGGT 598
Query 596 AGTTGAAAATGATGGTGCAGAGTCTAATGATTCGCTCAAGGAAGCTTCATCAGTAAAGGA 655
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGACGAAAACGATGGTGCAGAGTCTAATGATTCGCTCAAGGAAGCTTCATCAGTAAAGGA 658
Query 656 AAGCATGGATGTCAATGGCTTTCGAGTTCTTCCTTCACAGGTGGAAACTGTGAGCTGTAT 715
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAGCATGGATGTTAATGGCTTTCGAGTTCTTCCTTCACAGGTGGAAACTGTGAGCTGTAT 718
Query 716 ATTTGAAAGACACCCCGACATAGCATCAGAGTTCAGTCCAAAGAATCAGCATCTGAGGTC 775
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 ATTTGAAAGACACCCCGACATAGCATCAGAGTTCGGTCCAAAGAATCAGCATCTGAGGTC 778
Query 776 AGCTTACATGAACGTCCTTCTCAGCCTAATCAAGACTATGTGCCAGTCGACTCAGGAACT 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGCTTACATGAACGTCCTTCTCAGCCTAATCAAGACTATGTGCCAGTCGACTCAGGAACT 838
Query 836 TTCCAAGGATGATCTGTCAGACGCAGATGCTGCTCTTGCATACTTGACAGATGCAGGGTT 895
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 839 TTCCAAGGATGATCTGTCAGACGCAGATGCTGCTCTTGCATACTTGACGGATGCGGGGTT 898
Query 896 GAATCTAAATTGGTTGGAGGAGAAACTGGAAGAGGTGTCAGAAAAGAAGGAGAACGAGGA 955
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 899 GAATCTAAATTGGTTGGAGGAGAAACTGGAAGAAGTGTCAGAAAAGAAGGAGAACGAGGA 958
Query 956 AGCTGGTGAGACTCGGGTGCATGAAATAGAGGAAGAGTTGAAGGAGTTGAAGTTGAAGTG 1015
||||||||||||||||||||||||||| || |||||||||||||| || ||| |||||||
Sbjct 959 AGCTGGTGAGACTCGGGTGCATGAAATTGAAGAAGAGTTGAAGGAATTAAAGCTGAAGTG 1018
Query 1016 CTCAAACCTGGAAGCTCAGCTGGGGAAGGAGAAAGCAAATGTGTCTGTGGCCAGAGCTCC 1075
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1019 CTCAAACCTGGAAGCTCAGCTGGAGAAGGAGAAAGCAGATGTGTCTGTGGCCAGAGCTCC 1078
Query 1076 TTTCTCGTTCGATGATGTTGTTTAATGGCTTCAGTATTCAGATTCCTTCTTATAGTTCTG 1135
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTTCTCCTTCGATGATATTGTTTAATGGCTTCAGTATTCAGATTCCTTCTTATAGTTCTG 1138
Query 1136 TTTGGTGTGTTAGTCGTCTTGAAACTCTGCAAGATAAGTGGCTTAGGTTGGATGTTTCCG 1195
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTTGGTGTTTTAGTCCTCTTGAAACTCTGCAAGATAAGTGGCTTAGGTTGGATGTTTCCG 1198
Query 1196 CATTTTGTGGTTCTTGACTCGTTAGGTTTCTTTAATCCAATGTGTTTCTTG 1246
|||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1199 CATTTTGTGGCTCTTGACTCGTTAGGTTTCTTTAATCCAGTGTGTTTCTTG 1249
> AT3G44790.1 | Symbols: | TRAF-like family protein | chr3:16328792-16330265
FORWARD LENGTH=975
Length=975
Score = 95.3 bits (51), Expect = 1e-18
Identities = 318/440 (72%), Gaps = 45/440 (10%)
Strand=Plus/Plus
Query 93 AAGTTCACTTGGGTGATTAAGAATTTCTCCTCTCAGCAATCCACAAAA-ATTTATTCGGA 151
||||||||||||||||||||||||||||| ||| |||||| | | | ||| |||| ||
Sbjct 13 AAGTTCACTTGGGTGATTAAGAATTTCTCATCTTTGCAATCTA-AGTACATTAATTCTGA 71
Query 152 TGAATTC-TTCGTCGATGGCTGCAAATGGCGTCTTCTGGCCTTTCCTAAAGGAAATGGTG 210
| ||||| || ||| ||||||||||||| |||| || | || | | || || |
Sbjct 72 TAAATTCGTTA-TCGGTGGCTGCAAATGGTTTCTTAAGGGATATC--A--G-AA-TGCTA 124
Query 211 -TTGAGAAGTTGTCACTGTATCTGGCCGTTGCTGGTGGTGAATTTTTACCT-GATGGATG 268
|| | ||||| |||| |||| |||||| | || || ||| | ||||||
Sbjct 125 ATT-AT---TTGTCTCTGTTTCTGATGGTTGCTACTTCAAAAACATTGCCTTG-TGGATG 179
Query 269 GAGAAGACACGCA-GATATC-CACTTAAGTGTAGTGAATCAACTCTCTGAAGAACTCTCT 326
||||||| || || ||| || | || || ||| || |||||||| || || ||||| ||
Sbjct 180 GAGAAGATACACACGATTTCGC-CT-AACTGTTGTAAATCAACTTTCCGATGAACTTTCC 237
Query 327 CTAACTA-GAGAAACAGAA-CATTTGTTTGATGCGAGTAC-TTG--CGA-CTGGGGTTTT 380
| ||| | ||||||| ||| ||| |||||| | | || ||| | ||||| |
Sbjct 238 C-AACAACGAGAAACGGAAACATG-GTTTGAC-CAAA-ACGTTGTTCTCTCTGGGAATC- 292
Query 381 G-CATCAATGTTTTCCCTTAAAAAACTTCATGACAAAGAT-GGTGG-TTTCCTG-GTT-A 435
| || || || ||||||||| |||||| ||| | |||| ||||| |||| || | |
Sbjct 293 GACA-CA-TGATTTCCCTTACCAAACTTAATG-CGAAGAAAGGTGGATTTCTTGTGAACA 349
Query 436 ATGGAGAGCTCAAGATTATTGTCGAGGTATC-TGTTCTTGAAGTTATTGGCAAATTAGAC 494
||| | || |||||||| |||| ||||| | ||||||| |||||||||||||||||||
Sbjct 350 ATG-A-AG-TCAAGATTGTTGTGGAGGT-TGATGTTCTTCAAGTTATTGGCAAATTAGAT 405
Query 495 GTACCAGAGGAATGTGAAGA 514
|| |||||| || | ||||
Sbjct 406 GTTTCAGAGGGATCTCAAGA 425
> AT3G58240.1 | Symbols: | TRAF-like superfamily protein | chr3:21568530-21569827
REVERSE LENGTH=954
Length=954
Score = 76.8 bits (41), Expect = 5e-13
Identities = 101/129 (78%), Gaps = 7/129 (5%)
Strand=Plus/Plus
Query 72 ATGGGGAAAGAAGTTGATAACAAGTTCACTTGGGTGATTAAGAATTTCTCCTCTCAGCAA 131
|||||||| ||| |||||||||||||||||||||||||||||||| | ||| | |
Sbjct 1 ATGGGGAATCCAGTCGATAACAAGTTCACTTGGGTGATTAAGAATTTTTGTTCTGTG-AG 59
Query 132 TCCACAAAA--ATTTATTCGGATGAATTCTTCG-TCGATGGCTGCAAATGGCGTCTTCTG 188
|| ||| |||||||| ||| ||||||| | | | |||| |||||||| | |||||
Sbjct 60 CCC-CAAGCCCATTTATTCAGATCAATTCTT-GATTGGTGGCAACAAATGGCATATTCTG 117
Query 189 GCCT-TTCC 196
|||| ||||
Sbjct 118 GCCTATTCC 126
> AT3G29580.1 | Symbols: | Arabidopsis phospholipase-like protein
(PEARLI 4) with TRAF-like domain | chr3:11394675-11395871
REVERSE LENGTH=921
Length=921
Score = 56.5 bits (30), Expect = 6e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 87 GATAACAAGTTCACTTGGGTGATTAAGAAT 116
||||||||||||||||||||||||||||||
Sbjct 16 GATAACAAGTTCACTTGGGTGATTAAGAAT 45
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61244664900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5