BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486285

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G58330.1 | Symbols:  | Arabidopsis phospholipase-like protei...   649    0.0  
  AT3G44790.1 | Symbols:  | TRAF-like family protein | chr3:16328...  58.4    7e-08


> AT3G58330.1 | Symbols:  | Arabidopsis phospholipase-like protein 
(PEARLI 4) family | chr3:21587362-21588002 REVERSE LENGTH=522
Length=522

 Score =  649 bits (351),  Expect = 0.0
 Identities = 442/485 (91%), Gaps = 9/485 (2%)
 Strand=Plus/Plus

Query  1    ATGTTG-AGAGAAAATAGTTGCGAGGTTAGCGATAGTGAAGATGGTGATTTTTCTCCAAA  59
            |||||| || |||||||||||||||| || ||| ||||| |||||||||||||||||   
Sbjct  1    ATGTTGAAG-GAAAATAGTTGCGAGGCTAACGACAGTGACGATGGTGATTTTTCTCCTTC  59

Query  60   TCAAGATTCTTCGTCAGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTCAGGTTCTTCC  119
            ||||||   |||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  60   TCAAGA---TTCGTCGGAAGATGAAGAAACTGTTGAAGTCAATGGGTTTCATGTTCTTCC  116

Query  120  TTCACAAGAAACTTTGGTCAGTGAAATGTTTAAAAAGCATCCAGATCTCACTTCAAACTT  179
            ||||||||||| |||||||||| ||||||| ||||| ||||||||||| |||||||||||
Sbjct  117  TTCACAAGAAAATTTGGTCAGTCAAATGTTAAAAAAACATCCAGATCTGACTTCAAACTT  176

Query  180  TGATTTAAAGAATCAACAACTTAAGAATGCTTACATGGATGTTCTCCTCGACCTAAATGA  239
            |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||
Sbjct  177  TGATTTAAAGAATCAACAACTTAAGAATGCTTACATGGATGTCCTCGTCGACATAAGTGA  236

Query  240  GACATTATCCCAGTCGACAAAAA-AGCTTTCCTTGGTAGACCTAGACAAAGCAGAGAGTA  298
            |||||| ||||||||||||||   | |||||| ||| ||||||||| |||||||||||||
Sbjct  237  GACATTGTCCCAGTCGACAAAGGCA-CTTTCCATGGAAGACCTAGATAAAGCAGAGAGTA  295

Query  299  CGCTTTTTGATCTTACTAGAGCAGGCTTGAAAGTGTGTTGGTTGCGTCAGAAGTTGGATG  358
            |||||||||||||||| | |||||| ||||||||| ||||||||||||||||||||||||
Sbjct  296  CGCTTTTTGATCTTACGAAAGCAGGTTTGAAAGTGGGTTGGTTGCGTCAGAAGTTGGATG  355

Query  359  AAGCTTACGTGAAGAAGGAGAAACAGAGAGTTAGTGGTG-CGCGGATCAGAGAACTCGAG  417
            |||||||| ||||||| |||||||||||| ||||||||| | ||||||||||||||||||
Sbjct  356  AAGCTTACTTGAAGAAAGAGAAACAGAGAATTAGTGGTGTC-CGGATCAGAGAACTCGAG  414

Query  418  GAACAGGTCAAGAAGCGAAAGCTTACTTTGTCCGATTTGGAAACCGACCTTAAGAAAGAG  477
            ||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct  415  GAACAGGTCAATAAGCGAAAGCTTACTTTGTCCGATTTGGAATCCGACCTTAAAAAAGAG  474

Query  478  AAAGC  482
            |||||
Sbjct  475  AAAGC  479


> AT3G44790.1 | Symbols:  | TRAF-like family protein | chr3:16328792-16330265 
FORWARD LENGTH=975
Length=975

 Score = 58.4 bits (31),  Expect = 7e-08
 Identities = 33/34 (97%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  92   TTGAAGTCAATGGGTTTCAGGTTCTTCCTTCACA  125
            |||| |||||||||||||||||||||||||||||
Sbjct  488  TTGATGTCAATGGGTTTCAGGTTCTTCCTTCACA  521



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24363561295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5