BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486287
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58350.1 | Symbols: RTM3 | RESTRICTED TEV MOVEMENT 3 | chr3:... 1657 0.0
AT3G58400.1 | Symbols: | TRAF-like family protein | chr3:21602... 514 7e-145
> AT3G58350.1 | Symbols: RTM3 | RESTRICTED TEV MOVEMENT 3 | chr3:21591452-21592962
REVERSE LENGTH=1128
Length=1128
Score = 1657 bits (897), Expect = 0.0
Identities = 1043/1113 (94%), Gaps = 11/1113 (1%)
Strand=Plus/Plus
Query 1 GTTTGATTGCAGAGGAAGCTTCATCAAGTATCAATGGAGAAGCAATTTGATAAGAAGATC 60
||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct 24 GTTTGATTGCAGAGGAAGCTTCACCAAGTATCAATGGGGAAGCAATTCGATAAGAAGATC 83
Query 61 ACTTGGACGATTAAAAATTTCCCCTCTTTACCAGCTGACCTTATTTATTCTGATCATTTT 120
|||||||| |||||||||||| ||||||| | | ||||||| ||||||||||||||||||
Sbjct 84 ACTTGGACAATTAAAAATTTCGCCTCTTTGCTATCTGACCTCATTTATTCTGATCATTTT 143
Query 121 GTCGTTGGTGGCTGCAAATGGCATCTACGGGCCTATCCCAAGGGATATAATAATGCTAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 GTCGTTGGTGGCTGCAAATGGCATCTACGGGCCTATCCCAAGGGATATAATAATGCTAAT 203
Query 181 TATTTGTCCTTGTTTCTGGGTGTTGCTGTTCCTACTTCTCTGCCTTCTGGATGGAGAAGA 240
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TCTTTGTCCTTGTTTCTTGGTGTTGCTGTTCCTACTTCTCTGCCTTCTGGATGGAGAAGA 263
Query 241 CACACTAAATTTCGTCTAACTCTAGTAAATCAATCATCAGATAAACTCTCTCAGTCAAAA 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 264 CACACTAAATTTCGTCTAACTCTAGTAAATCAATTATCAGATAAACTCTCTCAGTCAAAA 323
Query 301 CGTACA-GAACTAGAACAGTGGTTTGATGAGAAGACTACCAACTGGGGTCTTCCATCCAT 359
| || | ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 324 CTTA-ATGAACTAGAACAGTGGTTTGATGAGAAGACTACCAACTGGGGTCTTTCATCCAT 382
Query 360 GTGTCCCCTAAATGAAATTCATGCCAAAGATAGCGGATTTCTCTTAAACGGGGAACTTAA 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 383 GTGTCCCCTAAATGAAATTCATGCCAAAGATAGCGGATTTCTGTTAAACGGGGAACTTAA 442
Query 420 AATAGTTGTCGAGATAAAAGTTCTTGAAACTATTGGAAAATTAGATATAACAGAGGAAAC 479
|| ||||||||||| |||||||||||||||||||| ||||||||| | |||||||||||
Sbjct 443 GATTGTTGTCGAGATCAAAGTTCTTGAAACTATTGGCAAATTAGATGTGACAGAGGAAAC 502
Query 480 TTCAACAGTCACAGAATCCGTGGATGTTAATGGCTTTCAACTTCTTCCTTCACAGGCAAA 539
||||||| |||| ||| | ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 503 TTCAACAATCACGGAAACTGTGGATGTTAATGGCTTTCAACTCCTTCCTTCACAAGCAAA 562
Query 540 ATCTGTGAGCCGTATGTTTGAAAAACACCCAGAGATGGCATCTGATTTACGTCCAAAGAA 599
||||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct 563 ATCTGTGAGTCGTATGTTTGCAAAACACCCAGAGCTTGCATCTGATTTACGTCCAAAGAA 622
Query 600 CCCAAATCTAAGGTCAGGTTACATGAGTTTGCTACTCAGTCTGATTGAGACTATGTGCCA 659
||||||||| ||| |||||||||||||| | ||||||||||||||||||||| || ||||
Sbjct 623 CCCAAATCTCAGGACAGGTTACATGAGTCTACTACTCAGTCTGATTGAGACTCTGAGCCA 682
Query 660 GTTACCTCGGGAAATGTCCAAGGAGGATCTGTTGGATGCTTATGCTGCACTGGGATCCAT 719
|||||||| | ||||||| ||||| ||||||||||||||||| | |||||||||||||||
Sbjct 683 GTTACCTCAGCAAATGTCAAAGGATGATCTGTTGGATGCTTACGATGCACTGGGATCCAT 742
Query 720 GAGAGATGCTGGATTTAAACTGGATTGGTTGGAGAAGAAACTTTATGATGTGTCAGAAAA 779
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 743 GAGAGATGCTGGATTTAAACTGGATTGGTTGGAGAAGAAACTTTATGAAGTGTCAGAAAA 802
Query 780 GAAGGAGAATGAGGAGGCTAGTGAGACTGGGCTGCAAGAAATGGAGGAAGAGTTGAAGGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 GAAGGAGAATGAGGAGGCTAGTGAGACTGGGCTGCAAGAAATGGAGGAAGAGTTGAAGGA 862
Query 840 AATGAAGCAGAAGTGTTTAGAAATGGAAGCTCGGGTAGAGAAGGAGAAGGCAAAAGTGTC 899
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 863 CATGAAGCAGAAGTGTTTAGAAATGGAAGCTCTGGTTGAGAAGGAGAAGGCAAAAGTGTC 922
Query 900 GACTGCAAAAGCTCCTATCTCATTCGATGATATTGTTTAATGTTTCTTGTGTTTT-AAGG 958
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 923 GACTGCAAAAGCTCCTATCTCATTCGATGATATTGTTTGATGCTTCTTGTGTTTTTAAGA 982
Query 959 CACGTGGAGTTTGGTTCTACTTGGTGTTGTGGGCTGTCCTTGCTAATTATTCCTCTTAAA 1018
||| |||||||||||| |||||||||||||||| ||| ||||||||| | ||||||||||
Sbjct 983 CACTTGGAGTTTGGTTTTACTTGGTGTTGTGGGATGTTCTTGCTAATGAGTCCTCTTAAA 1042
Query 1019 ACTTAGGAAGATAACAGAGACCCTGTCTTTGTAAATATCCGATCCACAATGTTGTAAAAT 1078
|||||||||||||| ||||||||||| || ||| ||| |||||||||||||||||||
Sbjct 1043 ACTTAGGAAGATAAAAGAGACCCTGTGTT-GTA--TAT---ATCCACAATGTTGTAAAAT 1096
Query 1079 GTAACTCTCTCGATTTCTGTAAAG-GATTGATC 1110
|||||||||| ||||||||||||| | ||||||
Sbjct 1097 GTAACTCTCTTGATTTCTGTAAAGAG-TTGATC 1128
> AT3G58400.1 | Symbols: | TRAF-like family protein | chr3:21602667-21604063
REVERSE LENGTH=951
Length=951
Score = 514 bits (278), Expect = 7e-145
Identities = 500/607 (82%), Gaps = 16/607 (3%)
Strand=Plus/Plus
Query 339 CAACTGGGGTCT-TCCATCCATGTGTCCCCTAAATGAAATTCATGCCAAAGATAGCGGAT 397
||| |||||| | ||||||||||| ||||||||||||||| |||||||||||||| ||||
Sbjct 351 CAAATGGGGT-TGTCCATCCATGTTTCCCCTAAATGAAATCCATGCCAAAGATAGTGGAT 409
Query 398 TTCTCTTAAACGGGGAACTTAAAATAGTTGTCGAGATA-AAAGTTCTTGAAACTATTGGA 456
|||| ||||||||||||| ||||| |||| ||||||| | | | |||||| |||||||
Sbjct 410 TTCTAGTAAACGGGGAACTCAAAATTGTTGCCGAGATAGATA-TCCTTGAAGTTATTGGA 468
Query 457 AAATTAGATATAACAG-AGGAAACTTCAACAGTCACA-GAATCCGTGGATGTTAATGGCT 514
| ||||| || ||| ||| | ||||||||| | | ||| || | ||||||||||||
Sbjct 469 GACGTAGATGTATCAGAAGG-TATTTCAACAGT-AAAGGAAACCATACATGTTAATGGCT 526
Query 515 TTCAACTTCTTCCTTCACAGGCAAAATCTGTGAGCCGTATGTTTGAAAAACACCCAGAGA 574
||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||
Sbjct 527 TTCAACTTCTTCCTTCACAGGCAAAATCTGTTAGCCATATTTTTGAAAGACACCCAGAGA 586
Query 575 TGGCATCTGATTTACGTCCAAAGAACCCAAATCTAAGGTCAGGTTACATGAGTTTGCTAC 634
| |||||||| | | ||||||||| ||| ||| ||| | |||||||||||||||||||
Sbjct 587 TTGCATCTGAAATCCACCCAAAGAACTCAAGTCTTAGGACTGGTTACATGAGTTTGCTAC 646
Query 635 TCAGTCTGATTGAGACTATGTGC-CAGTTACCTCGGGAAATGTCCAAGGAGGATCTGT-T 692
||||||||||||||||| | | | |||| ||||| ||| | |||||||| ||| ||| |
Sbjct 647 TCAGTCTGATTGAGACTTTAT-CTCAGTCACCTCAAGAACTCTCCAAGGATGATTTGTGT 705
Query 693 GGATGCT-TATGCTGCACTGGGATCCATGAGAGATGCTGGATTTAAACTGGATTGGTTGG 751
| | | | ||| |||| | |||| |||| | |||| || ||||| ||||||||||||
Sbjct 706 G-ACG-TATATATTGCAATTGGATGTATGAAAAATGCAGGGTTTAAGTTGGATTGGTTGG 763
Query 752 AGAAGAAACTTTATGATGTGTCAGAAAAGAAGGAGAATGAGGAGGCTAGTGAGACTGGGC 811
|||| ||||||||||| ||| || ||||||||||| |||| || ||| |||||||| |||
Sbjct 764 AGAACAAACTTTATGAGGTGGCACAAAAGAAGGAGGATGATGAAGCTGGTGAGACTCGGC 823
Query 812 TGCAAGAAATGGAGGAAGAGTTGAAGGAAATGAAGCAGAAGTGTTTAGAAATGGAAGCTC 871
| | ||||||||||||| |||||||||| |||||| ||||||| | |||||||||| |
Sbjct 824 TACGAGAAATGGAGGAAAAGTTGAAGGACTTGAAGCTCAAGTGTTCAAAAATGGAAGCGC 883
Query 872 GGGTAGAG-AAGGAGAAGGCAAAAGTGTCGACTGCAAAAGCTCCTATCTCATTCGATGAT 930
|| ||| ||| |||| || || |||||| |||||||||||| | ||||||||||||||
Sbjct 884 TAGTGGAGGAAG-AGAAAGCCAAGGTGTCGGCTGCAAAAGCTCATCTCTCATTCGATGAT 942
Query 931 ATTGTTT 937
||||||
Sbjct 943 GTTGTTT 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5