BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486292
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58440.1 | Symbols: | TRAF-like superfamily protein | chr3:... 1629 0.0
AT3G58430.1 | Symbols: | TRAF-like family protein | chr3:21613... 366 3e-100
AT3G58410.1 | Symbols: | TRAF-like family protein | chr3:21604... 340 2e-92
> AT3G58440.1 | Symbols: | TRAF-like superfamily protein | chr3:21618446-21621249
REVERSE LENGTH=1806
Length=1806
Score = 1629 bits (882), Expect = 0.0
Identities = 1181/1315 (90%), Gaps = 61/1315 (5%)
Strand=Plus/Plus
Query 1 ATGTCATTAGATTTGAAGATGCAAGAGAATTTTACTTGGGTTTTGGAAAACTTCTCATCT 60
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 1 ATGTCATTAGATTTGAAGATGCAAGATAAATTTACTTGGGTTTTGGAAAAGTTCTCATCT 60
Query 61 TTGCAAGAAGAGTGCTACTCTCCCGTCTTCACGGTCGCCGGCTGCAATTGGCGTCTTCTT 120
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGAAAGATCAGTGCTACTCTCCCGTCTTCACGGTCGCCGGCTGCAATTGGCGTCTTCTT 120
Query 121 GCTTGTCCCAGAGGAGTTAGGAGGAATGATCGTTACTTTTCCGTGTATCTTGATCTTGCG 180
||| || || ||||| || | ||||||||||||||||||||||||||||||||||| |
Sbjct 121 TCTTTTCTCAAAGGAGCTA--A-GAATGATCGTTACTTTTCCGTGTATCTTGATCTTGAG 177
Query 181 CCTGAATCTTTGCCACCAGGATGGAGAAGAGAAGTGAAATTTAGCATTACTCTTGTCAAT 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 178 CCTGGATCTTTGCCACCAGGATGGAGAAGAGAAGTGAAATTTAGCATTACTCTTGACAAT 237
Query 241 GTTTGGCCT-ATTGCGAACAGAGTATTAGGAGAGCCATGCTTTTTCGATGCAAAAACTAG 299
||||| ||| || || ||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 238 GTTTGCCCTAATACCG-ACAGAGTATTAGGAGGGCCATGCTTTTTCGATGCAAAGAGTAA 296
Query 300 CAATTGGGGTTTTGAAGATTTCTTGCTCCTTGAAAAACTTCG-TAATAAAGGGGAAGGAT 358
|| |||||||||| |||||||||||||||||||||||||| | ||||| || |||||||
Sbjct 297 CATTTGGGGTTTTCAAGATTTCTTGCTCCTTGAAAAACTT-GTTAATATAGCTGAAGGAT 355
Query 359 TTTTGGTGAATGACAGACTCACTATCGTCGCTGAAGTACATGTTTTACCACCTATTGTTG 418
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 356 TTTTGGTGAATGACAGACTCACTATCGTCGCTGAAGTAGATGTTTTACCTTCTATTGTTG 415
Query 419 TGCCATTGGAACCTGTGAAGATTATTGCATCTCtga-agaagttagatgat-at--tgat 474
|||||||||||||||||||||||||| |||||| | |||||||||||||| || ||||
Sbjct 416 TGCCATTGGAACCTGTGAAGATTATTTCATCTC-AAGAGAAGTTAGATGATGATGATGAT 474
Query 475 ga---tga-ga---a--tgatgagagttcggatgatgaagatgCATCCCAGGAGGATACA 525
|| ||| || | ||| |||||||||||||||| |||||||||||||||| ||||
Sbjct 475 GATTGTGACGACGCATCTGAAGAGAGTTCGGATGATGGAGATGCATCCCAGGAGTATACT 534
Query 526 GATGATAATGATGATGGAGTTTGTGACATAAGTCTTTTGAGCCAATTGATGAATGCCTTA 585
|||||||||||||||| ||||||||||||||||| ||||| || | | |||||||| ||
Sbjct 535 GATGATAATGATGATGAAGTTTGTGACATAAGTCGTTTGAACC--TAG-TGAATGCCATA 591
Query 586 GAGGATGCTTCTCGTACGGAAGAAAATCATGGTATAAGTTGTAATACTGTGTTGGCTGAG 645
||| |||||| | ||| | || | || || ||||||||||| | || ||||||||
Sbjct 592 GAGAATGCTTTTTATAC-G-AG----T-AT--TAGAAGTTGTAATAGTTTGGTGGCTGAG 642
Query 646 ACTGAGGTTTCCAATGGTGAAAATGATGATGCACCTAAAAAAGATGTTGATGATGATGAG 705
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 643 ACTGAGGTTTCCAATGATGAAAATGATGATGCACCTAAAAAAGATGTTGATGATGA-G-G 700
Query 706 TCTTCAGCTCTTGTTTTGAATGATAGTGATAGAAACGGAAGTACTATAGAACAAGTGAAA 765
||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 701 -CTTCATCTCTTGTTTTGAATGATAGTGCTAGAAACGGAAGTAGTATAGAACAAGTGAAA 759
Query 766 GTGACGAGGCTTCATCTCGTGTTGGAGGATGCCTCTCAGACATTTAAAAATGGTGGTACG 825
|||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 760 AAGACGAGGCTTCATCTCGTGTTGGAGGATGCCTCT----C-----------GTGGTA-G 803
Query 826 GG-GCTTAACACCGTGGCATCTGTTACGGGA-ACTTGTGATAATGTGCTTATGGAGATTC 883
|| | |||||||||||||| |||||| ||| ||||||||| ||||||||||||||||||
Sbjct 804 GGATCCTAACACCGTGGCATGTGTTAC-GGAGACTTGTGATTATGTGCTTATGGAGATTC 862
Query 884 AA-CAAG-TACAGGAAACAGTGGATATCAATGGGTTTGAGGTTGTTTCTTCCAAGGTGGA 941
|| | || || ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 863 AATC-AGATA-AGGAAACAGTGGATATCAATGGGTTTGTGGTTGTTTCTTCCAAGGCGGA 920
Query 942 ATCTGTGAGACGTATATTCGAAAGACACCCAGACAT-TGCTGTGGAGTTTCGTGGAAAGA 1000
|||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||
Sbjct 921 ATCTGTGAGACGTATACTCGAAAGACACCCAGACATAT-CAGTGGAGTTTCGTGGAAAGA 979
Query 1001 ACCAACATCTGAGGAACGCATGTATGAATTTTCTGCTCAGCTTAATCGAGACGATGTGCC 1060
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 980 ACCAACAACTGAGGAACGCATGTATGAATTTCCTGCTCAGCTTAATCGAAACGATGTGCC 1039
Query 1061 AATCACTTGAGGAGCTCTCCAATGAAGATCTTGTGGAAGCAGACATTGCGTTGACATACT 1120
| ||||| ||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 1040 AGTCACTGGAGGAGCTCTCGAATGAAGATCTTGTGGAAGCAGACGTAGCGTTGACATACT 1099
Query 1121 TGAGAGATGCAGGGTTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAACTAAAGGAAA 1180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1100 TGAGAGATGCAGGGTTTAAGGTTGATTGGTTGGAGAAGAAGCTGGACCAACTAAAGGAAA 1159
Query 1181 AGAAGGAGGAAGAGATGTCTGGTTTGGCCAGGCTCCATGAGATAGAGGAAAATCTAGTGA 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 AGAAGGAGGAAGAGATGTCTGGTTTGGCCAGGCTCCATGAGATAGAGGAAAATCTAGTGA 1219
Query 1241 TATTGGAGCAAAAGTGGTCAGACCTGGATGCTCTTGCGGAGAAGGAGAAGGCAGA 1295
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1220 TATTGAAGCAAAAGTGGTCAGACCTGGGTGCTCTTGCGGAGAAGGAGAAGGCAGA 1274
> AT3G58430.1 | Symbols: | TRAF-like family protein | chr3:21613163-21616183
REVERSE LENGTH=1617
Length=1617
Score = 366 bits (198), Expect = 3e-100
Identities = 369/449 (82%), Gaps = 21/449 (5%)
Strand=Plus/Plus
Query 894 GGAAACAGTGGATATCAATGGGTTTGAGGTTGTTTCTTCCA-AGGTGGAATCTGTGAGA- 951
||||| || ||| ||||||| ||| | ||| || ||| || ||||||||| |||||||
Sbjct 979 GGAAA-GGTAGATGTCAATGGCTTTCAAGTTCTTCCTT-CACAGGTGGAATATGTGAGAT 1036
Query 952 CGTATATTCGAAAGACACCCAGACATTGCTGTGGAGTTTCGTGGAAAGAACCAACATCTG 1011
| ||||| ||||||||||| |||||||| || ||||| || | ||||||||||||||||
Sbjct 1037 C-AATATTTGAAAGACACCCTGACATTGCAGTAGAGTTCCGAGCAAAGAACCAACATCTG 1095
Query 1012 AGGAAC-GCATGTATGAATTTTCTGCTCAGCTTAATCGAGACGA-TGTGCCAATCACTTG 1069
||| || |||| |||| ||||||||| || ||||| ||||| | ||||||| |||||||
Sbjct 1096 AGG-ACATCATGCATGATTTTTCTGCTTAGTTTAATTGAGAC-ACTGTGCCAGTCACTTG 1153
Query 1070 AGGAGCTCTCCAATGAAGATCTTGTGGAAGCAGACATTGCGTTGACATACT-TGAGAGAT 1128
| |||||||| ||||||||||||||||||||||||||||| |||||||| | ||| ||||
Sbjct 1154 AAGAGCTCTCAAATGAAGATCTTGTGGAAGCAGACATTGCATTGACATA-TGTGAAAGAT 1212
Query 1129 GCAGGGTTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAACTAAAGGAAAAGAAGGAG 1188
||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1213 GCAGGATTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAAGTAAAAGAAAAGAAGGAG 1272
Query 1189 GAAGAGA-TGTCTGGTTTGGC-CAGGCTCCATGAGATAGAGGAAAATCTAGTGATATTGG 1246
|||| | |||||| | ||| ||| || || || || ||||| || || ||| | ||
Sbjct 1273 AAAGA-ACTGTCTGATATGGTTCAG-CTACAAGAAATGGAGGACCATTTACTGAAACTGA 1330
Query 1247 AGCAAAAG-TGGTCAGACCTGGATGCTCTTGCGGAGAAGGAGAAGG-CAGAGTTGTCGGC 1304
|||||| | || ||||| || |||| ||| | || |||| |||||| | ||||||||||
Sbjct 1331 AGCAAA-GCTGTTCAGATCTTGATGATCTAGTGGTGAAGAAGAAGGAC-GAGTTGTCGGT 1388
Query 1305 CACCAGAGCTGC-CATGTCTTTCGATGAT 1332
|||||| || | | |||| |||||||||
Sbjct 1389 TACCAGATCTCCGC-TGTCATTCGATGAT 1416
Score = 161 bits (87), Expect = 1e-38
Identities = 167/204 (82%), Gaps = 12/204 (6%)
Strand=Plus/Plus
Query 1141 GTGGATTGGTTGGAGAAGAAGCTGGACCAACT-AAAGGAAAAGAAGGAG-GAAGAG-ATG 1197
|||||||||||||||||||||||||||||| | |||| | ||||||||| || || | |
Sbjct 1417 GTGGATTGGTTGGAGAAGAAGCTGGACCAAGTGAAAG-ACAAGAAGGAGAGA-GAACA-G 1473
Query 1198 TCTGGTTTGGCCAGGCTCCATGAGA-TAGAGGAAAATCTAGTGATATTGGAGCAAAAGTG 1256
|||||||| ||| |||| || || | |||||||| || || | | | || ||||||||||
Sbjct 1474 TCTGGTTTAGCCCGGCTTCACGA-ACTAGAGGAATATTTACTTAAACTGAAGCAAAAGTG 1532
Query 1257 GTCAGACCTGGATGCT-CTTGCGGAGAAGGAGAAGGCAGAGTTGTCGGCCACCAGAGCTG 1315
||| || ||||| || || | |||||||||||| | ||||||||||||||||||| ||
Sbjct 1533 TTCAAACTTGGAT-CTTCTAGTGGAGAAGGAGAATGTAGAGTTGTCGGCCACCAGAACT- 1590
Query 1316 CC-ATGTCTTTCGATGATTTTGTT 1338
|| ||||| ||| ||||| |||||
Sbjct 1591 CCTATGTCATTCAATGATGTTGTT 1614
> AT3G58410.1 | Symbols: | TRAF-like family protein | chr3:21604871-21606229
REVERSE LENGTH=987
Length=987
Score = 340 bits (184), Expect = 2e-92
Identities = 341/416 (82%), Gaps = 14/416 (3%)
Strand=Plus/Plus
Query 893 AGGAAA-CAGTGGATATCAATGGGTTTGAGGTTGTTTCTTCCA-AGGTGGAATCTGTGAG 950
|||||| || |||| |||| || ||| | ||| || ||| || |||| |||||||||||
Sbjct 539 AGGAAAGCA-TGGAGGTCAACGGATTTCAAGTTCTTCCTT-CACAGGTAGAATCTGTGAG 596
Query 951 ACGTATATTCGAAAGACACCCAGACATTGCTGT-GGAGTTTCGTGGAAAGAACCAACATC 1009
|| |||||| ||||||||||| |||||||| | || || |||| |||||||||| |||
Sbjct 597 ACTTATATTTGAAAGACACCCTGACATTGC-ATCAGAATTCCGTGCAAAGAACCAATATC 655
Query 1010 TGAGGAACGCATGTATGAATTTTCTGCTCAG-CTTAATCGAGACGATGTGCCAATCACTT 1068
||||||| ||||| ||| |||| || ||||| ||| | |||||| ||||||| |||| |
Sbjct 656 TGAGGAAAGCATGCATGGATTTCCTTCTCAGCCTT-GTTGAGACGCTGTGCCAGTCAC-T 713
Query 1069 G-AGGAGCTCTCCAATGAAGATCTTGTGGAAGCAGACATTGCGTTGACATACTTGAGAGA 1127
| | ||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 714 GCAAGAGTTCTCCAATGAAGATCTTGTGGAAGCAGACATCGCGCTGACATACTTGAAAGA 773
Query 1128 TGCAGGGTTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAACTAA-AGGAAAAGAAGG 1186
||| ||||| |||||||| ||||||||||| ||| |||||||| ||| || | |||||||
Sbjct 774 TGCGGGGTTCAAGGTGGACTGGTTGGAGAAAAAGTTGGACCAAGTAAGAG-ATAAGAAGG 832
Query 1187 AGGAAGAGATGTCTGGTTTGGCCAGGCTCCATGAGATAGAGGAAAATCTAGTGATATTGG 1246
|| ||||| |||| ||||||||| |||||| || | |||||||| | || ||| ||||
Sbjct 833 AGAAAGAGCGGTCTTGTTTGGCCAAGCTCCAAGAAACAGAGGAAACTTTACTGAAATTGA 892
Query 1247 AGCAAAAGTGGT-CAGACCTGGATGCTCTTGCGGAGAAGGAGAAGGCAGAGTTGTC 1301
|||||||||| | |||| || |||||||| ||| | || ||||||||||||||
Sbjct 893 AGCAAAAGTG-TACAGAGCTAGATGCTCTAATGGATACTGAAAAGGCAGAGTTGTC 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66164318310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5