BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486292 Length=1344 Score E Sequences producing significant alignments: (Bits) Value AT3G58440.1 | Symbols: | TRAF-like superfamily protein | chr3:... 1629 0.0 AT3G58430.1 | Symbols: | TRAF-like family protein | chr3:21613... 366 3e-100 AT3G58410.1 | Symbols: | TRAF-like family protein | chr3:21604... 340 2e-92 > AT3G58440.1 | Symbols: | TRAF-like superfamily protein | chr3:21618446-21621249 REVERSE LENGTH=1806 Length=1806 Score = 1629 bits (882), Expect = 0.0 Identities = 1181/1315 (90%), Gaps = 61/1315 (5%) Strand=Plus/Plus Query 1 ATGTCATTAGATTTGAAGATGCAAGAGAATTTTACTTGGGTTTTGGAAAACTTCTCATCT 60 |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct 1 ATGTCATTAGATTTGAAGATGCAAGATAAATTTACTTGGGTTTTGGAAAAGTTCTCATCT 60 Query 61 TTGCAAGAAGAGTGCTACTCTCCCGTCTTCACGGTCGCCGGCTGCAATTGGCGTCTTCTT 120 ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTGAAAGATCAGTGCTACTCTCCCGTCTTCACGGTCGCCGGCTGCAATTGGCGTCTTCTT 120 Query 121 GCTTGTCCCAGAGGAGTTAGGAGGAATGATCGTTACTTTTCCGTGTATCTTGATCTTGCG 180 ||| || || ||||| || | ||||||||||||||||||||||||||||||||||| | Sbjct 121 TCTTTTCTCAAAGGAGCTA--A-GAATGATCGTTACTTTTCCGTGTATCTTGATCTTGAG 177 Query 181 CCTGAATCTTTGCCACCAGGATGGAGAAGAGAAGTGAAATTTAGCATTACTCTTGTCAAT 240 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 178 CCTGGATCTTTGCCACCAGGATGGAGAAGAGAAGTGAAATTTAGCATTACTCTTGACAAT 237 Query 241 GTTTGGCCT-ATTGCGAACAGAGTATTAGGAGAGCCATGCTTTTTCGATGCAAAAACTAG 299 ||||| ||| || || ||||||||||||||| ||||||||||||||||||||| | || Sbjct 238 GTTTGCCCTAATACCG-ACAGAGTATTAGGAGGGCCATGCTTTTTCGATGCAAAGAGTAA 296 Query 300 CAATTGGGGTTTTGAAGATTTCTTGCTCCTTGAAAAACTTCG-TAATAAAGGGGAAGGAT 358 || |||||||||| |||||||||||||||||||||||||| | ||||| || ||||||| Sbjct 297 CATTTGGGGTTTTCAAGATTTCTTGCTCCTTGAAAAACTT-GTTAATATAGCTGAAGGAT 355 Query 359 TTTTGGTGAATGACAGACTCACTATCGTCGCTGAAGTACATGTTTTACCACCTATTGTTG 418 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 356 TTTTGGTGAATGACAGACTCACTATCGTCGCTGAAGTAGATGTTTTACCTTCTATTGTTG 415 Query 419 TGCCATTGGAACCTGTGAAGATTATTGCATCTCtga-agaagttagatgat-at--tgat 474 |||||||||||||||||||||||||| |||||| | |||||||||||||| || |||| Sbjct 416 TGCCATTGGAACCTGTGAAGATTATTTCATCTC-AAGAGAAGTTAGATGATGATGATGAT 474 Query 475 ga---tga-ga---a--tgatgagagttcggatgatgaagatgCATCCCAGGAGGATACA 525 || ||| || | ||| |||||||||||||||| |||||||||||||||| |||| Sbjct 475 GATTGTGACGACGCATCTGAAGAGAGTTCGGATGATGGAGATGCATCCCAGGAGTATACT 534 Query 526 GATGATAATGATGATGGAGTTTGTGACATAAGTCTTTTGAGCCAATTGATGAATGCCTTA 585 |||||||||||||||| ||||||||||||||||| ||||| || | | |||||||| || Sbjct 535 GATGATAATGATGATGAAGTTTGTGACATAAGTCGTTTGAACC--TAG-TGAATGCCATA 591 Query 586 GAGGATGCTTCTCGTACGGAAGAAAATCATGGTATAAGTTGTAATACTGTGTTGGCTGAG 645 ||| |||||| | ||| | || | || || ||||||||||| | || |||||||| Sbjct 592 GAGAATGCTTTTTATAC-G-AG----T-AT--TAGAAGTTGTAATAGTTTGGTGGCTGAG 642 Query 646 ACTGAGGTTTCCAATGGTGAAAATGATGATGCACCTAAAAAAGATGTTGATGATGATGAG 705 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | | Sbjct 643 ACTGAGGTTTCCAATGATGAAAATGATGATGCACCTAAAAAAGATGTTGATGATGA-G-G 700 Query 706 TCTTCAGCTCTTGTTTTGAATGATAGTGATAGAAACGGAAGTACTATAGAACAAGTGAAA 765 ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 701 -CTTCATCTCTTGTTTTGAATGATAGTGCTAGAAACGGAAGTAGTATAGAACAAGTGAAA 759 Query 766 GTGACGAGGCTTCATCTCGTGTTGGAGGATGCCTCTCAGACATTTAAAAATGGTGGTACG 825 |||||||||||||||||||||||||||||||||| | |||||| | Sbjct 760 AAGACGAGGCTTCATCTCGTGTTGGAGGATGCCTCT----C-----------GTGGTA-G 803 Query 826 GG-GCTTAACACCGTGGCATCTGTTACGGGA-ACTTGTGATAATGTGCTTATGGAGATTC 883 || | |||||||||||||| |||||| ||| ||||||||| |||||||||||||||||| Sbjct 804 GGATCCTAACACCGTGGCATGTGTTAC-GGAGACTTGTGATTATGTGCTTATGGAGATTC 862 Query 884 AA-CAAG-TACAGGAAACAGTGGATATCAATGGGTTTGAGGTTGTTTCTTCCAAGGTGGA 941 || | || || ||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 863 AATC-AGATA-AGGAAACAGTGGATATCAATGGGTTTGTGGTTGTTTCTTCCAAGGCGGA 920 Query 942 ATCTGTGAGACGTATATTCGAAAGACACCCAGACAT-TGCTGTGGAGTTTCGTGGAAAGA 1000 |||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||| Sbjct 921 ATCTGTGAGACGTATACTCGAAAGACACCCAGACATAT-CAGTGGAGTTTCGTGGAAAGA 979 Query 1001 ACCAACATCTGAGGAACGCATGTATGAATTTTCTGCTCAGCTTAATCGAGACGATGTGCC 1060 ||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 980 ACCAACAACTGAGGAACGCATGTATGAATTTCCTGCTCAGCTTAATCGAAACGATGTGCC 1039 Query 1061 AATCACTTGAGGAGCTCTCCAATGAAGATCTTGTGGAAGCAGACATTGCGTTGACATACT 1120 | ||||| ||||||||||| |||||||||||||||||||||||| | ||||||||||||| Sbjct 1040 AGTCACTGGAGGAGCTCTCGAATGAAGATCTTGTGGAAGCAGACGTAGCGTTGACATACT 1099 Query 1121 TGAGAGATGCAGGGTTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAACTAAAGGAAA 1180 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1100 TGAGAGATGCAGGGTTTAAGGTTGATTGGTTGGAGAAGAAGCTGGACCAACTAAAGGAAA 1159 Query 1181 AGAAGGAGGAAGAGATGTCTGGTTTGGCCAGGCTCCATGAGATAGAGGAAAATCTAGTGA 1240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1160 AGAAGGAGGAAGAGATGTCTGGTTTGGCCAGGCTCCATGAGATAGAGGAAAATCTAGTGA 1219 Query 1241 TATTGGAGCAAAAGTGGTCAGACCTGGATGCTCTTGCGGAGAAGGAGAAGGCAGA 1295 ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1220 TATTGAAGCAAAAGTGGTCAGACCTGGGTGCTCTTGCGGAGAAGGAGAAGGCAGA 1274 > AT3G58430.1 | Symbols: | TRAF-like family protein | chr3:21613163-21616183 REVERSE LENGTH=1617 Length=1617 Score = 366 bits (198), Expect = 3e-100 Identities = 369/449 (82%), Gaps = 21/449 (5%) Strand=Plus/Plus Query 894 GGAAACAGTGGATATCAATGGGTTTGAGGTTGTTTCTTCCA-AGGTGGAATCTGTGAGA- 951 ||||| || ||| ||||||| ||| | ||| || ||| || ||||||||| ||||||| Sbjct 979 GGAAA-GGTAGATGTCAATGGCTTTCAAGTTCTTCCTT-CACAGGTGGAATATGTGAGAT 1036 Query 952 CGTATATTCGAAAGACACCCAGACATTGCTGTGGAGTTTCGTGGAAAGAACCAACATCTG 1011 | ||||| ||||||||||| |||||||| || ||||| || | |||||||||||||||| Sbjct 1037 C-AATATTTGAAAGACACCCTGACATTGCAGTAGAGTTCCGAGCAAAGAACCAACATCTG 1095 Query 1012 AGGAAC-GCATGTATGAATTTTCTGCTCAGCTTAATCGAGACGA-TGTGCCAATCACTTG 1069 ||| || |||| |||| ||||||||| || ||||| ||||| | ||||||| ||||||| Sbjct 1096 AGG-ACATCATGCATGATTTTTCTGCTTAGTTTAATTGAGAC-ACTGTGCCAGTCACTTG 1153 Query 1070 AGGAGCTCTCCAATGAAGATCTTGTGGAAGCAGACATTGCGTTGACATACT-TGAGAGAT 1128 | |||||||| ||||||||||||||||||||||||||||| |||||||| | ||| |||| Sbjct 1154 AAGAGCTCTCAAATGAAGATCTTGTGGAAGCAGACATTGCATTGACATA-TGTGAAAGAT 1212 Query 1129 GCAGGGTTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAACTAAAGGAAAAGAAGGAG 1188 ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 1213 GCAGGATTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAAGTAAAAGAAAAGAAGGAG 1272 Query 1189 GAAGAGA-TGTCTGGTTTGGC-CAGGCTCCATGAGATAGAGGAAAATCTAGTGATATTGG 1246 |||| | |||||| | ||| ||| || || || || ||||| || || ||| | || Sbjct 1273 AAAGA-ACTGTCTGATATGGTTCAG-CTACAAGAAATGGAGGACCATTTACTGAAACTGA 1330 Query 1247 AGCAAAAG-TGGTCAGACCTGGATGCTCTTGCGGAGAAGGAGAAGG-CAGAGTTGTCGGC 1304 |||||| | || ||||| || |||| ||| | || |||| |||||| | |||||||||| Sbjct 1331 AGCAAA-GCTGTTCAGATCTTGATGATCTAGTGGTGAAGAAGAAGGAC-GAGTTGTCGGT 1388 Query 1305 CACCAGAGCTGC-CATGTCTTTCGATGAT 1332 |||||| || | | |||| ||||||||| Sbjct 1389 TACCAGATCTCCGC-TGTCATTCGATGAT 1416 Score = 161 bits (87), Expect = 1e-38 Identities = 167/204 (82%), Gaps = 12/204 (6%) Strand=Plus/Plus Query 1141 GTGGATTGGTTGGAGAAGAAGCTGGACCAACT-AAAGGAAAAGAAGGAG-GAAGAG-ATG 1197 |||||||||||||||||||||||||||||| | |||| | ||||||||| || || | | Sbjct 1417 GTGGATTGGTTGGAGAAGAAGCTGGACCAAGTGAAAG-ACAAGAAGGAGAGA-GAACA-G 1473 Query 1198 TCTGGTTTGGCCAGGCTCCATGAGA-TAGAGGAAAATCTAGTGATATTGGAGCAAAAGTG 1256 |||||||| ||| |||| || || | |||||||| || || | | | || |||||||||| Sbjct 1474 TCTGGTTTAGCCCGGCTTCACGA-ACTAGAGGAATATTTACTTAAACTGAAGCAAAAGTG 1532 Query 1257 GTCAGACCTGGATGCT-CTTGCGGAGAAGGAGAAGGCAGAGTTGTCGGCCACCAGAGCTG 1315 ||| || ||||| || || | |||||||||||| | ||||||||||||||||||| || Sbjct 1533 TTCAAACTTGGAT-CTTCTAGTGGAGAAGGAGAATGTAGAGTTGTCGGCCACCAGAACT- 1590 Query 1316 CC-ATGTCTTTCGATGATTTTGTT 1338 || ||||| ||| ||||| ||||| Sbjct 1591 CCTATGTCATTCAATGATGTTGTT 1614 > AT3G58410.1 | Symbols: | TRAF-like family protein | chr3:21604871-21606229 REVERSE LENGTH=987 Length=987 Score = 340 bits (184), Expect = 2e-92 Identities = 341/416 (82%), Gaps = 14/416 (3%) Strand=Plus/Plus Query 893 AGGAAA-CAGTGGATATCAATGGGTTTGAGGTTGTTTCTTCCA-AGGTGGAATCTGTGAG 950 |||||| || |||| |||| || ||| | ||| || ||| || |||| ||||||||||| Sbjct 539 AGGAAAGCA-TGGAGGTCAACGGATTTCAAGTTCTTCCTT-CACAGGTAGAATCTGTGAG 596 Query 951 ACGTATATTCGAAAGACACCCAGACATTGCTGT-GGAGTTTCGTGGAAAGAACCAACATC 1009 || |||||| ||||||||||| |||||||| | || || |||| |||||||||| ||| Sbjct 597 ACTTATATTTGAAAGACACCCTGACATTGC-ATCAGAATTCCGTGCAAAGAACCAATATC 655 Query 1010 TGAGGAACGCATGTATGAATTTTCTGCTCAG-CTTAATCGAGACGATGTGCCAATCACTT 1068 ||||||| ||||| ||| |||| || ||||| ||| | |||||| ||||||| |||| | Sbjct 656 TGAGGAAAGCATGCATGGATTTCCTTCTCAGCCTT-GTTGAGACGCTGTGCCAGTCAC-T 713 Query 1069 G-AGGAGCTCTCCAATGAAGATCTTGTGGAAGCAGACATTGCGTTGACATACTTGAGAGA 1127 | | ||| ||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 714 GCAAGAGTTCTCCAATGAAGATCTTGTGGAAGCAGACATCGCGCTGACATACTTGAAAGA 773 Query 1128 TGCAGGGTTTAAGGTGGATTGGTTGGAGAAGAAGCTGGACCAACTAA-AGGAAAAGAAGG 1186 ||| ||||| |||||||| ||||||||||| ||| |||||||| ||| || | ||||||| Sbjct 774 TGCGGGGTTCAAGGTGGACTGGTTGGAGAAAAAGTTGGACCAAGTAAGAG-ATAAGAAGG 832 Query 1187 AGGAAGAGATGTCTGGTTTGGCCAGGCTCCATGAGATAGAGGAAAATCTAGTGATATTGG 1246 || ||||| |||| ||||||||| |||||| || | |||||||| | || ||| |||| Sbjct 833 AGAAAGAGCGGTCTTGTTTGGCCAAGCTCCAAGAAACAGAGGAAACTTTACTGAAATTGA 892 Query 1247 AGCAAAAGTGGT-CAGACCTGGATGCTCTTGCGGAGAAGGAGAAGGCAGAGTTGTC 1301 |||||||||| | |||| || |||||||| ||| | || |||||||||||||| Sbjct 893 AGCAAAAGTG-TACAGAGCTAGATGCTCTAATGGATACTGAAAAGGCAGAGTTGTC 947 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66164318310 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5