BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486294
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58450.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 933 0.0
> AT3G58450.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr3:21622002-21623166 FORWARD LENGTH=754
Length=754
Score = 933 bits (505), Expect = 0.0
Identities = 646/708 (91%), Gaps = 33/708 (5%)
Strand=Plus/Plus
Query 1 GGAGaaaaaaaTGGAGACGTACGTTGATGCGATTGGAGAGGACACGGCAGCCACAACAAC 60
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 21 GGAGTAAAAAATGGAGACTTACGTTGATGCGATTGGAGAGGACACGGCAGCCACAACAAC 80
Query 61 GA---CGGAGACGGATACAAATAAGAACAAGAAGAAGTTGAAAGTGATGGTTGCGATTGA 117
|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GACGGCGGAGACGGCTGCAAATAAGAACAAGAAGAAGTTGAAAGTGATGGTTGCGATTGA 140
Query 118 TGAAAGCAAAAACAGCTTCGATGCTTTGGAATGGGCTGTGGATCATCTCAGAGTTGTTAT 177
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 141 TGAGAGCAAGAACAGCTTCGATGCGTTGGAATGGGCTGTGGATCATCTCAGAGTTGTTAT 200
Query 178 TAGCGCTGAACCGGAAACTGGTCAAGAAGGCGGTTTACTTACGCTGGTTCATGTTCACCC 237
||| || ||||||||||| |||||||||||||||||||||||| || |||||||||||||
Sbjct 201 TAGTGCCGAACCGGAAACCGGTCAAGAAGGCGGTTTACTTACGTTGCTTCATGTTCACCC 260
Query 238 AACGTACCTTCAATATATCTACCCTTCTGGTGGAACTGCTTCGGCGGTGTATGCGACAGA 297
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 261 AACGTACCTTCAATATATCTATCCTTCTGGTGGAACTGCTTCGGCGGTGTATGCGACAGA 320
Query 298 TTCTGTGCCCGAACCAATGAGGAAAGCACGGGAAGAGAGTACGACCAACTTATTCACACG 357
||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 321 TTCAGTGCCCGAACCAATGAGGAAAGCACGAGAAGAGAGTACGACAAACTTATTCACACG 380
Query 358 GGCATTGGAGATATGCCGAGGCAAAATGGTGAAGACAGAGACTATGATATTGGAAGGAGA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GGCATTGGAGATATGCCGAGGCAAAATGGTGAAGACAGAGACTATGATATTGGAAGGAGA 440
Query 418 TCCTAAGGAGATGATATGCCAAGCGGTCGAGCAAACTCACGTTGATCTTCTTGTTGTTGG 477
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 441 TCCTAAGGAGATGATATGCCAAGCCGTCGAGCAAACACATGTTGATCTTCTTGTTGTTGG 500
Query 478 TAGCCGTGGACTCGGCATGATCAAAAGGGCGTTTTTAGGGAGTGTAAGTGACTACTGTGC 537
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 501 TAGCCGTGGACTCGGCATGATCAAAAGGGCATTTTTAGGGAGTGTAAGTGACTACTGTGC 560
Query 538 CCAACATGCAAAATGTCCAATTCTCATTGTGCGGCCG--T-------C-TC---TAGGCA 584
||||||||||||||||||||||||||||||||| ||| | | || ||| |
Sbjct 561 CCAACATGCAAAATGTCCAATTCTCATTGTGCGACCGCCTAGAGAAACCTCAACTAGTAA 620
Query 585 -A-GA-G---CA-A-GTG-A-G-GA--A-GGAAACCATGTTATGATCGCTTCTATTTCAT 630
| || | || | | | | | || | |||||||||||||| || |||||| ||||||
Sbjct 621 CACGAAGGAACACAAGAGCAAGTGAGGAAGGAAACCATGTTATAATAGCTTCTGTTTCAT 680
Query 631 TCTGTTTGTACTCCGTAGAGG-Gaaaaaaa--TGTGCCGCCAATAAAC 675
|| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 681 TCCGTTTGTACTCCGTAGAGAAGAAAAAAAAGTGTGCCGCCAATAAAC 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5