BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486299
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58500.1 | Symbols: PP2A-4 | protein phosphatase 2A-4 | chr3... 2283 0.0
AT2G42500.1 | Symbols: PP2A-3 | protein phosphatase 2A-3 | chr2... 1371 0.0
> AT3G58500.1 | Symbols: PP2A-4 | protein phosphatase 2A-4 | chr3:21635226-21639105
REVERSE LENGTH=1413
Length=1413
Score = 2283 bits (1236), Expect = 0.0
Identities = 1321/1361 (97%), Gaps = 9/1361 (1%)
Strand=Plus/Plus
Query 1 AAAAAGCGAAGAATACGCAGAATCCATCCAATTTAGGGTTAGGGCTGCCCCTAATCTGGT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAAAAGCGAAGAATACGCAGAATCCATCCAATTTAGGGTTAGGGCTGCCCCTAATCTGGA 119
Query 61 AACCTGTT-CCTCGTCTCTGATCTGTTTCCCGGATCCGACTAGAAGGAAAGAAGACGACG 119
||||| || |||||| |||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 120 AACCT-TTGCCTCGTTTCTGATCTGTTTTCCGGATCCGACTTGAAGGAAAGAAGACGACG 178
Query 120 TCGCACTACCAAAAAGATGGGCGCGAATTCGCTTCCGACGGATGCAACCCTCGATCTAGA 179
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 ACGCACTACCAAAAACATGGGCGCGAATTCGCTTCCAACGGATGCAACCCTCGATCTAGA 238
Query 180 TGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAGCAACAGGTCAGAGCATT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAGCAACAGGTCAGAGCATT 298
Query 240 ATGTGAGAAAGCTAAGGAGATCTTGATGGATGAAAGCAACGTTCAGCCGGTTAAAAGCCC 299
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 299 ATGTGAGAAAGCTAAGGAGATCTTAATGGATGAAAGCAACGTTCAGCCTGTTAAAAGCCC 358
Query 300 TGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGTAT 418
Query 360 AGGGGGAAAGTGCCCTGATACCAACTATCTGTTTATGGGAGACTATGTCGACCGTGGATA 419
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGGGGGAAAGTGTCCTGATACCAACTATCTGTTTATGGGAGACTATGTCGACCGTGGATA 478
Query 420 TTATTCTGTCGAAACTGTTACGCTGTTGGTTGGCTTGAAAGTACGGTATCCACAGCGAAT 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTATTCTGTGGAAACTGTTACGCTGTTGGTTGGCTTGAAAGTACGGTATCCACAGCGAAT 538
Query 480 CACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTATGA 598
Query 540 TGAATGTCTGCGAAAGTATGGCAATGCAAATGTTTGGAAGATATTTACAGACCTCTTTGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGAATGTCTGCGAAAGTATGGCAATGCAAATGTTTGGAAGATATTTACAGACCTCTTTGA 658
Query 600 CTATTTTCCACTGACAGCCTTGGTGGAGTCAGAAATATTCTGCCTTCACGGTGGATTATC 659
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 659 CTATTTCCCACTGACAGCCTTGGTGGAGTCGGAAATATTCTGCCTTCACGGTGGATTATC 718
Query 660 ACCATCAATCGAGACCCTTGACAACATTAGGAACTTTGATCGAGTTCAAGAAGTTCCGCA 719
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 719 ACCATCCATCGAGACCCTTGACAACATTAGGAACTTTGATCGGGTTCAAGAAGTTCCACA 778
Query 720 TGAAGGGCCTATGTGTGACTTATTATGGTCTGATCCTGATGACAGATGTGGTTGGGGAAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 779 TGAAGGGCCTATGTGTGACTTATTATGGTCTGATCCTGATGACAGATGTGGCTGGGGAAT 838
Query 780 CTCTCCTCGTGGTGCCGGATATACATTTGGTCAGGACATTTCCGAACAATTCAATCACAC 839
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 839 CTCTCCTCGTGGTGCTGGATATACATTTGGTCAGGATATTTCGGAACAATTCAATCACAC 898
Query 840 TAACAACTTAAAGCTGATCGCCCGAGCGCATCAGCTTGTTATGGATGGATTCAACTGGGC 899
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 899 TAACAACTTAAAGCTGATCGCCCGAGCGCATCAGCTCGTTATGGATGGATTCAATTGGGC 958
Query 900 CCACGAGCAAAAGGTGGTTACTATATTCAGTGCACCAAACTATTGCTATCGCTGTGGAAA 959
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ACACGAGCAAAAAGTGGTTACTATATTCAGTGCACCAAACTATTGCTATCGCTGTGGAAA 1018
Query 960 CATGGCCTCAATTCTTGAGGTCGATGACTGCAGGAACCACACGTTCATTCAGTTTGAACC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CATGGCCTCAATTCTTGAGGTCGATGACTGCAGGAACCACACGTTCATTCAGTTTGAACC 1078
Query 1020 AGCACCGAGGAGAGGAGAGCCAGATGTAACCCGAAGGACACCTGACTATTTCCTATGAAG 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1079 AGCACCGAGGAGAGGAGAGCCAGATGTAACCCGAAGGACACCTGACTATTTCCTTTGAAG 1138
Query 1080 ACACTCAGCTCATCCTGCAGCTGTAAAGTCCGGTTGTTTGTTTTTGAAGATCTCTGCTTA 1139
| ||||||||| |||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 1139 ATACTCAGCTCCTCCTGCAGCT-T-----CCGGTTGTTGGTTTTTGAAGATCTCTGCTTA 1192
Query 1140 TTCCATTTGGTTCAACGCATTTGTGTTCCAGGTTGCTTCTCTTTAAAATCAATTTAGCCC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TTCCATTTGGTTCAACGCATTTGTGTTCCAGGTTGCTTCTCTTTAAAATCAATTTAGCCC 1252
Query 1200 TCTCCCGTGGAATAGTGTAATATAGGCAAAGAGGTCAATGAACTTTAAA-CCTCTCATGA 1258
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1253 TCTCCCTTGGAATAGTGTAATATAGGCAAAGAGGTCAATGAACTTTAAAACCTCTCATGA 1312
Query 1259 ACATGTGTTTGGCTGAACTTATTAGCTCCCTTCTGCATCAGAATCTGTTTATTGTGAGAT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 ACATGTGTTTGGCTGAACTTATTAGCTCCCTTCTGCATCAGAATCTGTTTATTGTGAGAT 1372
Query 1319 ATTATTTCGATTTATTTCACGTAATTTTTCCCTTTTGTTCC 1359
||| |||||||||||||||||||||||||||||||||||||
Sbjct 1373 ATTTTTTCGATTTATTTCACGTAATTTTTCCCTTTTGTTCC 1413
> AT2G42500.1 | Symbols: PP2A-3 | protein phosphatase 2A-3 | chr2:17697667-17701417
REVERSE LENGTH=1565
Length=1565
Score = 1371 bits (742), Expect = 0.0
Identities = 973/1082 (90%), Gaps = 26/1082 (2%)
Strand=Plus/Plus
Query 1 AAAAA-GCGAAGAATACGCAGAATCCATCCAATTTAGGGTTAGGGCTGCCCCTAATCTGG 59
||||| |||||||||||||||| ||||||||||||||||||||| || |||||||| |||
Sbjct 73 AAAAAGGCGAAGAATACGCAGATTCCATCCAATTTAGGGTTAGGACTTCCCCTAATTTGG 132
Query 60 TAACCT-GTTCCTCGTCT-CTGATCTGTTTCCCGGATCCGACTAGAAGGAAAGAAGACGA 117
||||| | |||| || | ||||||||||| |||||| || | | | || ||||||
Sbjct 133 AAACCTAG-TCCT-GTTTCCTGATCTGTTTTCCGGAT-CG----G-ACG--AG-AGACGA 181
Query 118 CGTCGCACTACCAAAAAGATGGGCGCGAATTCGCTTCCGACGGATGCAACCCTCGATCTA 177
| || | ||| |||||||||||||| |||||||||| |||||| | |||||
Sbjct 182 ------ATTAAC-GAAA-ATGGGCGCGAATTCTATTCCGACGGACGCAACCATTGATCTT 233
Query 178 GATGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCCGAGCAACAGGTCAGAGCA 237
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 234 GATGAGCAGATCTCGCAGCTCATGCAGTGCAAGCCTCTCTCGGAGCAACAGGTTAGAGCA 293
Query 238 TTATGTGAGAAAGCTAAGGAGATCTTGATGGATGAAAGCAACGTTCAGCCGGTTAAAAGC 297
||||| |||||||| ||||||||||| |||||||||||||| |||||||| || ||||||
Sbjct 294 TTATGCGAGAAAGCCAAGGAGATCTTAATGGATGAAAGCAATGTTCAGCCTGTGAAAAGC 353
Query 298 CCTGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CCTGTGACAATCTGCGGTGATATTCATGGACAGTTCCATGATCTTGCAGAGCTTTTCCGT 413
Query 358 ATAGGGGGAAAGTGCCCTGATACCAACTATCTGTTTATGGGAGACTATGTCGACCGTGGA 417
|||||||||| ||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 414 ATAGGGGGAATGTGCCCTGATACCAATTACCTGTTTATGGGAGACTATGTGGACCGTGGT 473
Query 418 TATTATTCTGTCGAAACTGTTACGCTGTTGGTTGGCTTGAAAG-TACGGTATCCACAGCG 476
||||||||||| ||||||||||||||||| || | ||| |||| | || ||||| |||||
Sbjct 474 TATTATTCTGTTGAAACTGTTACGCTGTTAGTCGCCTT-AAAGATGCGATATCCTCAGCG 532
Query 477 AATCACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 AATCACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAGGTTTATGGATTTTA 592
Query 537 TGATGAATGTCTGCGAAAGTATGGCAATGCAAATGTTTGGAAGATATTTACAGACCTCTT 596
|||||||||||| |||||||| ||||| |||||||||||||| || ||||||||||||||
Sbjct 593 TGATGAATGTCTACGAAAGTACGGCAACGCAAATGTTTGGAAAATCTTTACAGACCTCTT 652
Query 597 TGACTATTTTCCACTGACAGCCTTGGTGGAGTCAGAAATATTCTGCCTTCACGGTGGATT 656
||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 653 CGACTATTTTCCTCTGACAGCCTTGGTTGAGTCAGAAATATTTTGCCTTCATGGTGGATT 712
Query 657 ATCACCATCAATCGAGACCCTTGACAACATTAGGAACTTTGATCGAGTTCAAGAAGTTCC 716
||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 713 ATCTCCATCTATCGAGACCCTTGACAACATAAGGAATTTTGATCGAGTTCAAGAAGTGCC 772
Query 717 GCATGAAGGGCCTATGTGTGACTTATTATGGTCTGATCCTGATGACAGATGTGGTTGGGG 776
||||||||||| ||||||||||||||||||||||| || |||||| |||||||||||||
Sbjct 773 CCATGAAGGGCCGATGTGTGACTTATTATGGTCTGACCCCGATGACCGATGTGGTTGGGG 832
Query 777 AATCTCTCCTCGTGGTGCCGGATATACATTTGGTCAGGACATTTCCGAACAATTCAATCA 836
||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 833 CATCTCTCCTCGGGGTGCCGGATATACATTTGGTCAGGATATATCTGAACAATTCAATCA 892
Query 837 CACTAACAACTTAAAGCTGATCGCCCGAGCGCATCAGCTTG-TTATGGATGGATTCAACT 895
||| |||||||||||||||||||||||||| || ||| ||| |||||||||||| |||||
Sbjct 893 CACAAACAACTTAAAGCTGATCGCCCGAGCTCACCAG-TTGGTTATGGATGGATACAACT 951
Query 896 GGGCCCACGAGCAAAAGGTGGTTACTATATTCAGTGCACCAAACTATTGCTATCGCTGTG 955
|||| ||||||||||| ||||||||||| |||||||||||||||||||| || || ||||
Sbjct 952 GGGCTCACGAGCAAAAAGTGGTTACTATTTTCAGTGCACCAAACTATTGTTACCGTTGTG 1011
Query 956 GAAACATGGCCTCAATTCTTGAGGTCGATGACTGCAGGAACCACACGTTCATTCAGTTTG 1015
| ||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 1012 GGAACATGGCCTCGATTCTTGAGGTCGACGACTGCAGGAACCACACCTTCATCCAGTTTG 1071
Query 1016 AACCAGCACCGAGGAGAGGAGAGCCAGATGTAACCCGAAGGACACCTGACTATTTCCTAT 1075
|||||||||||||||||||||| ||||| || ||||||||||| || ||||||||||| |
Sbjct 1072 AACCAGCACCGAGGAGAGGAGAACCAGACGTCACCCGAAGGACTCCAGACTATTTCCTGT 1131
Query 1076 GA 1077
||
Sbjct 1132 GA 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66917326485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5