BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486304
Length=1591
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58520.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 2351 0.0
> AT3G58520.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr3:21643770-21645486 REVERSE LENGTH=1617
Length=1617
Score = 2351 bits (1273), Expect = 0.0
Identities = 1426/1498 (95%), Gaps = 17/1498 (1%)
Strand=Plus/Plus
Query 98 AACACTAAACCCTAAACACATTTTGCACTTC-CAATTAGAGATCATCCAGCAGGTTTTCG 156
||||||||||||||||| |||||||||| || |||||| |||||||||| || |||||
Sbjct 133 AACACTAAACCCTAAACCCATTTTGCAC-TCTCAATTACAGATCATCCA-CA---TTTCG 187
Query 157 CATTTTCGTCAAATCTCTTTAGATGTTCGTCAAATCCCAAAGCTTTCTCTTTTCGGTGAG 216
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 188 CGCTTTCGTCAAATCTCTTTAGATGTTCGTCAAATCACAAAGCTTTCTCTTTTCGGTGAG 247
Query 217 TAAGCTGTTTCACTACCATCATCAACAATGGCGAGGAATGGGTGCAATGACAAAGGTGAG 276
|||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TAAGCTGTTT--C-ACCAGCATCAACAATGGCGAGGAATGGGTGCAATGACAAAGGTGAG 304
Query 277 ACTGAAGTGGGTGAAGAACAAGAACTTGGATCACGTCATTGATTAC-GAGACCGATCTCA 335
||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||
Sbjct 305 ACTGAAGTGGGTGAAGAACAAGAACCTGGATCACGTCATTGA-TACTGAGACCGATCTCA 363
Query 336 AAGCAGCTTGCATTCTCAAAGACGCCATAAAGCGATCGCCCACCGGTTTCCTCACCGCAA 395
|||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 364 AAGCAGCTTGTATCCTCAAAGACGCCATAAAGCGATCTCCCACTGGTTTCCTCACCGCAA 423
Query 396 AATCCGTCGCCGATTGGCAAAAACTCCTTGGACTCACCGTCCCTGTTCTCCGCTTCTTGC 455
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 424 AATCCGTCGCCGATTGGCAAAAACTCCTTGGTCTCACCGTCCCTGTTCTCCGCTTCTTGC 483
Query 456 GCAGGTATCCGACTCTGTTTCACGAATTTCCTCATGCTCGTTACGCAAGCTTACCATGTT 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GCAGGTATCCGACTCTGTTTCACGAATTTCCTCATGCTCGTTACGCAAGCTTACCATGTT 543
Query 516 TCAAGCTAACGGACACAGCACTAATGCTTGACTCACAGGAAGAGATTATTCATCAAAGCC 575
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 544 TCAAGCTAACGGACACAGCACTAATGCTTGACTCACAAGAAGAGATTATTCATCAAAGCC 603
Query 576 ACGAGGCTGATACAGTGGAGAGACTCTGTAGAGTTCTTATGATGATGAGAACAAAAACTG 635
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 604 ACGAGGCTGATACAGTGGAGAGACTCTGTAGAGTTCTGATGATGATGAGATCAAAAACTG 663
Query 636 TCTCTCTCAGATCACTGCATTCTCTCAAATTCGATCTCGGTTTACCTGATAACTACGAAA 695
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 664 TCTCTCTTAGATCACTACATTCTCTCAAATTCGATCTCGGTTTACCCGATAACTACGAAA 723
Query 696 AGACACTAGTCATGAAATACCCTGATCATTTCTGCTTCGTCAAGGCTTCTAATGGTAACC 755
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 AGACGCTAGTCATGAAATACCCTGATCATTTCTGCTTCGTCAAGGCTTCTAATGGTAACC 783
Query 756 CGTGTTTAAAGCTTGTAAAATGGCGTGACGAATTCGCATTCTCGGCGCTGCAGAAGCGAA 815
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 784 CGTGTTTAAAGCTTGTAAAATGGCGTGATGAGTTCGCATTCTCGGCGCTGCAGAAGCGAA 843
Query 816 ACGAGGACAATGGTGTTACCGGGGAGGATTCTAGTTACCGCGAGTTCAAAAGAGGTCAGT 875
|||||||||||| |||| |||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 844 ACGAGGACAATGATGTTTCCGGGGAGGAGTCTAGATACCGCGAGTTCAAGAGAGGTCAGT 903
Query 876 CTACGTTGACTTTCCCTATGAGTTTCCCTAGAGGATATGGAGCACAGAAGAAGGTCAAAG 935
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 CTACGTTGACTTTTCCTATGAGTTTCCCTAGAGGATATGGAGCACAGAAGAAGGTCAAAG 963
Query 936 CATGGATGGATGAGTTTCAAAAACTTCCCTACATATCTCCTTACGATGACTCGAGTAACA 995
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 964 CATGGATGGATGAGTTTCAAAAACTTCCCTACATATCTCCTTACGATGACCCGAGTAACA 1023
Query 996 TTGACCCGGAAAGCGATCTTATGGAGAAACGAGCTGTGGGTGTTTTGCACGAGCTCTTGA 1055
|||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1024 TTGATCCGGAAAGCGATCTCATGGAGAAACGAGCTGTGGCTGTTTTGCACGAGCTCTTGA 1083
Query 1056 GCTTGACTATCCACAAGAAAACCAAGAGGAACTACTTGAGAAGCATGAGAGCGGAGCTCG 1115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GCTTGACTATCCACAAGAAAACCAAGAGGAACTACTTGAGAAGCATGAGAGCGGAGCTCA 1143
Query 1116 ACATTCCGCATAAGTTCACTCGTCTATTCACGCGATACCCCGGCATTTTTTACCTCTCAT 1175
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1144 ACATTCCGCACAAGTTCACTCGTCTATTCACGCGATACCCCGGCATTTTCTACCTCTCAT 1203
Query 1176 TGAAGTGTAAGACAACAACTGTGATCCTCAAAGAAGGGTATCGTCGAGGAAAACTAGTGA 1235
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1204 TGAAGTGTAAGACAACAACTGTGATCCTCAAAGAAGGGTATCGCCGAGGAAAACTAGTGG 1263
Query 1236 ATCCGCATCCTCTCACTCGTCTTCGAGATAAGTTCTATCATGTGATGAGAACAGGGTTTC 1295
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1264 ATCCGCATCCTCTCACTCGTCTTCGAGATAAGTTTTATCATGTGATGAGAACAGGGTTTC 1323
Query 1296 TTTACCGGGCTAGAGGGCTAGGCATGGTCTCTAAAGAGGAACTTTTGCTTGATAGGCCAG 1355
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 TTTATCGGGCGAGAGGGCTAGGCATGGTCTCTAAAGAGGAACTTTTGCTTGATAGGCCAG 1383
Query 1356 AGGATGACCTtgaggaagaaggctctgaagaagaagagattgtggaaggaagtgagcttg 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 AGGATGACCTTGAGGAAGAAGGCTCTGAAGAAGAAGAGATTGTGGAAGGAAGTGAGCTTG 1443
Query 1416 aagaagattctgaagatgaaTAGCAAATAGTTGTTGAATCTAAATGTCAAAAAGTTTTAT 1475
||||||||||||||| |||||||||| |||||||||||||||| ||| | ||| ||
Sbjct 1444 AAGAAGATTCTGAAGCTGAATAGCAA-TAGTTGTTGAATCTAATTGTTGTAT-GTTA-AT 1500
Query 1476 TCATAAAGAGCAACAATTTATA-AC-TGCATTTTATCCTTTTGAAGTAGTGGAAAGGAGT 1533
||| | ||||||||||||||| || ||||||||||| |||||||||| |||| |||||
Sbjct 1501 TCACACAGAGCAACAATTTATGTACCTGCATTTTATCTTTTTGAAGTAACGGAACGGAGT 1560
Query 1534 TTAAACTATGTAAGCACAAAGTCCTTAAAAAGGATATAAAGAGAGATTGTATTTCACC 1591
|||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1561 TTAAACAATGTAAGCACAAAGTCCTTAAAATG-ATATAAAGAGAGATTGTATTTCACC 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78563852925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5