BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486305
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58530.1 | Symbols: | RNI-like superfamily protein | chr3:2... 1799 0.0
> AT3G58530.1 | Symbols: | RNI-like superfamily protein | chr3:21645547-21648368
FORWARD LENGTH=1423
Length=1423
Score = 1799 bits (974), Expect = 0.0
Identities = 1109/1174 (94%), Gaps = 10/1174 (1%)
Strand=Plus/Plus
Query 101 TAGTCCTGAGGCTGATTGGTAGAAAAAAGTCGCAAAGCTTGGATTGAGAATC-ATGGAAG 159
||||||||||||||||||||||| ||| | | |||||||||||||| || | |||||||
Sbjct 161 TAGTCCTGAGGCTGATTGGTAGAGGAAATTGGAAAAGCTTGGATTGA-AAACTATGGAAG 219
Query 160 CGAAGAAAGTGACAGAAGAGGAAGAAGAGTCATGGAGGAGAGAGATAGTAACAAGCGTTA 219
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 220 CGAAGAAAGTGACAGAAGAGGAAGAAGAGACGTGGAGGAGAGAGATAGTAACAAGCGTTA 279
Query 220 TGAGATTAGTGAGCACGAGATTGCCTCAGACAGATCTAATTTCTCTACTTCTCGTTAGCC 279
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 280 TGAGATTAGTGAGTACGAGATTGCCTCAGACAGATCTAATTTCTCTACTTCTGGTTAGCC 339
Query 280 CTTGGCTTTATCGCACCCTCATCTCCTACCCTTCAATCTGGCTGAACATCGATTTGCGCG 339
| |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||
Sbjct 340 CATGGCTTTATCGCACCCTCATCTCCTATCCTTCAATCTGGCTGACCATCAATTTGCGCG 399
Query 340 AGATGACCAATGCAGGGGATCGGCTTTTAGCTGCTCTGTCCTTGCCAAGATATAGACAAT 399
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 400 AGATGACCAATGCAGGGGATCGGCTTTTAGCTGCTCTGTCCTTGCCAAGATATCGACAAG 459
Query 400 TGAAGCATATCAATCTTGAATTTGCCCAGGGTGTTGTGGACAGTCATCTCAAACTTGTGA 459
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 460 TGAAGCATATCAATCTTGAATTTGCCCAGGGTGTTGTGGACAGTCATCTTAAACTTGTGA 519
Query 460 AAGCCGAGTGCCCGGATGCTCTTTTAAGTTTAGAATGCTTGAATCTGAATGGGTGCCAAA 519
|| |||||||||||||||||||||| ||| ||||||| ||||||||||| | ||||||||
Sbjct 520 AAACCGAGTGCCCGGATGCTCTTTTGAGTCTAGAATGGTTGAATCTGAACGTGTGCCAAA 579
Query 520 AGATATCAGACAATGGAATTGAAGCGATAACTAGCATATGTCCAAAGTTAAAAGTTTTCT 579
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 580 AGATATCAGACAATGGAATCGAAGCTATAACTAGCATATGTCCAAAGTTAAAAGTTTTCT 639
Query 580 CTATCTACTGGAACGTAAGGGTCACTGATGCTGGCATTAGACATTTAGTGAAAAATTGCA 639
|||||||||||||||||||||| || ||||||||||||||| || ||||||| |||||||
Sbjct 640 CTATCTACTGGAACGTAAGGGTGACCGATGCTGGCATTAGAAATCTAGTGAAGAATTGCA 699
Query 640 GACATATCATTGATTTGAACTTAAGTGGCTGCAAGAGTCTAACGGACAAAAGTATGCAGC 699
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 700 GACATATCACTGATTTGAACTTAAGTGGCTGCAAGAGCCTAACGGACAAAAGTATGCAAC 759
Query 700 TAGTAGCTGAAAGTTATCAAGACTTAGAGTCACTGAATATCACTAGGTGTGTTAAGATTA 759
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 760 TAGTAGCTGAAAGTTATCCAGACTTAGAGTCACTGAATATCACTAGGTGTGTTAAGATTA 819
Query 760 CAGATGATGGATTACTTCAAGTGCTACAAAAATGTTCCTCTCTCCAGACCTTAAATCTCT 819
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 820 CAGATGATGGATTACTTCAAGTGCTACAAAAATGTTTCTCTCTCCAGACCTTAAATCTCT 879
Query 820 ATGCTCTTTCAGGCTTCACAGACAAAGCCTACAAGAAGATATCACTTTTACCTGACCTAA 879
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 880 ATGCTCTTTCAGGCTTCACAGACAAAGCCTACATGAAGATATCACTTTTAGCTGACCTAA 939
Query 880 GGTTCTTAGATCTATGTGGCGCTCAGAATTTATCTGACGAGGGGCTTGGTCATATAGCTA 939
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 940 GGTTCTTAGATATATGTGGCGCTCAGAATATATCTGACGAGGGGATTGGTCATATAGCTA 999
Query 940 AATGCAACAAACTAGAGTCTCTCAACTTGACATGGTGTGTGCGTATCACAGATGCAGGTG 999
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 AATGCAACAAGTTAGAGTCTCTCAACTTGACATGGTGTGTGCGTATCACAGATGCAGGTG 1059
Query 1000 TGA-TAACCATTGCTAATAGTTGTACCTCCCTCGAATTTCTCAGCTTGTTTGGAATAGTT 1058
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1060 TGAATA-CCATTGCTAATAGTTGTACCTCCCTCGAATTTCTCAGCTTGTTTGGGATAGTT 1118
Query 1059 GGGGTGAGTGATAGATGTCTGGAGACCCTCTCGCAGACATGCTCTACTACGCTCACCACT 1118
||||||| ||| ||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 1119 GGGGTGACTGACAGATGTCTGGAGACCCTTTCGCAGACATGCTCGACTACACTCACCACT 1178
Query 1119 CTTGACGTCAATGGCTGCATCGGCATCAAGAGACGAAGCCATGAAGAGTTGCTTCAGATG 1178
||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1179 CTTGATGTCAATGGCTGCACCGGCATCAAGAGACGAAGCCGTGAAGAGTTGCTTCAGATG 1238
Query 1179 TTCCCTCGTCTGACATGCTTCAAAGTACACAGCTAAAATTTGCTCATA-A--TTAGAGGA 1235
||||||||| |||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 1239 TTCCCTCGTTTGACATGCTTCAAAGTACACAGCTGAAATTTGCTCATATAAATTAGAGGA 1298
Query 1236 GGACTCTCAACAAATGTCTATTCTTCGGTTATAA 1269
|||||||||||||||||| |||| |||||||
Sbjct 1299 ---CTCTCAACAAATGTCTATCCTTCAGTTATAA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64156296510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5