BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486310
Length=2443
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58590.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3818 0.0
> AT3G58590.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:21666082-21668625 FORWARD LENGTH=2544
Length=2544
Score = 3818 bits (2067), Expect = 0.0
Identities = 2320/2444 (95%), Gaps = 9/2444 (0%)
Strand=Plus/Plus
Query 1 TAGATCAATTCTTTAGTTCCCTGGTTCTGAACTTCAAACTTCGTTCCTGATGTTTATAAA 60
|||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 2 TAGATCAATTATTTAGTTCCCTGGTTCTGAACTTCAAACTTTGTTCTTGATGTTTATAAA 61
Query 61 AAGTTCC-AACTTTTAAAATTTCAGACCTTTATTAGAACTTTCTTCATGATGCACAAAAT 119
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 62 AA--TCCGAACTTTTAAAATTTCAGACCTTTATTAGAACTTTCTTCATGATGCACGAAAC 119
Query 120 TTAGTTCTTGATTAGAACTGAGATCGATCTGGGTAGTGCTCTGTTTTCAGTATCCTTCTG 179
||||||||| |||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 120 TTAGTTCTTAATTATAACTGAGATCGATCTGGGAAGTACTCTGTTTTCAGTATCCTTCTG 179
Query 180 CATGAGCCTCAGCTGTGGAGATCTCGCCAATCACAACGATCGTCTAGTTAGCTTACTCAA 239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 CATGAGCCTCAGCTGTGGAGATCTCGCCAATCACAACGATCGTGTAGTTAGCTTACTCAA 239
Query 240 CGTCTGTAGAAAAGCTCCTTCCTTTGCAAGGACCAAAGCTCTTCACGCTCTCTCCATCAC 299
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTCTGCAGAAAAGCTCCTTCCTTTGCAAGGACCAAAGCTCTTCACGCTCTCTCCATCAC 299
Query 300 TTTATGCTCTGTTATTTTGCAGCCAGTTTATATCTCCAATAACATTAT-ATGTCTTTATG 358
||||||||||||| ||||||||||||||||| ||| |||||||||||| | |||||||||
Sbjct 300 TTTATGCTCTGTTCTTTTGCAGCCAGTTTATGTCTGCAATAACATTATCA-GTCTTTATG 358
Query 359 AGAAGCTTGGCGAGGTATCACTTGCAGGCAAAGTGTTTGATCAAATGCCTGAGAGAAATA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGAAGCTTGGCGAGGTATCACTTGCAGGCAAAGTGTTTGATCAAATGCCTGAGAGAAATA 418
Query 419 AAGTGTCTTTCAACACGATCATTAATGGGTACAGCAAATACGGGGATGCGGAGAAAGCTT 478
||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||
Sbjct 419 AAGTGTCTTTCAACACGATCATTAAAGGGTACAGCAAATACGGGGATGTTGATAAAGCTT 478
Query 479 GGGGTGTATTCTCTGATATGATGTTTTTTGGATATTTGCCGAATCAGTCGACAGTGAGTG 538
||||||| |||||||| |||| || |||||||||||||||||| ||||| ||||||||||
Sbjct 479 GGGGTGTGTTCTCTGAGATGAGGTATTTTGGATATTTGCCGAACCAGTCAACAGTGAGTG 538
Query 539 GTTTATTGTCATGTGCATCGTTGGATGTTCGTGCGGGAACTCAGTTGCACGGTTTGAGCT 598
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 539 GTTTATTGTCCTGTGCATCGTTGGATGTTCGTGCTGGAACTCAGTTGCACGGTTTGAGCT 598
Query 599 TGAAGTATGGCTTGTTTATGGCTGATGCATATGTTGGTACTTGTTTGTTGTGTTTGTATG 658
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 599 TGAAGTATGGCTTGTTTATGGCTGATGCATTTGTTGGTACTTGTTTGTTGTGTTTGTATG 658
Query 659 GGAGGCTTGAGTTGCTGGAAATGACGGAACAGGTTTTTGAAGATATGCCGTTTAAGAGCT 718
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 659 GGAGGCTTGACTTGCTGGAAATGGCGGAACAGGTTTTTGAAGATATGCCGTTTAAGAGCT 718
Query 719 TGGAAACATGGAACCATATGATGTCTTTGTTGGGCCATCGTGGTTTTCTCAAAGAATGCA 778
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 TGGAAACATGGAACCATATGATGTCTTTGTTGGGGCATCGTGGTTTTCTCAAAGAATGCA 778
Query 779 TGTTTCTCTTCCGTGAGCTTGTTGGGATGGGCGCTTGTTTAACTGAATGCTCTTTCTTGG 838
||||| ||||||||||||||||| |||||||||||| |||||||||| |||||||| |||
Sbjct 779 TGTTTTTCTTCCGTGAGCTTGTTAGGATGGGCGCTTCTTTAACTGAAAGCTCTTTCCTGG 838
Query 839 GTGTATTGAAGGGTGTATCTTGTGAAAATGACTTGGAAATCAGCAAACAATTGCACTGCT 898
|||||||||||||||||||||||| ||| |||||||| || |||||||| ||||| ||||
Sbjct 839 GTGTATTGAAGGGTGTATCTTGTGTAAAGGACTTGGATATTAGCAAACAGTTGCATTGCT 898
Query 899 CAGCAACGAAACAAGGGTTGGATTGTGAAATTTCAGTCGTTAACTCTCTCATCAGCGCAT 958
||||||||||| ||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 899 CAGCAACGAAAAAAGGGTTAGATTGTGAAATATCCGTCGTTAACTCTCTCATCAGCGCAT 958
Query 959 ATGGAAAATGTGGCAACACACATATGGCAGAGAGAATGTTTCAGGAGGCAGGTTCCTGGG 1018
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 959 ATGGAAAATGTGGCAATACGCATATGGCAGAGAGAATGTTTCAGGATGCAGGTTCCTGGG 1018
Query 1019 ATATAGTGTCTTGGAACGCCATAATTGGTGCAACAGCCAAAAGTGAGAACCCGTTAAAAA 1078
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 ATATAGTGTCATGGAACGCCATAATTTGTGCAACAGCCAAAAGTGAGAACCCGTTAAAAG 1078
Query 1079 CACTCAAACTCTTCGTAAGTATGCCAGAGCATGGGTTTTCCCCGAACCAAGGTACATACA 1138
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CACTCAAACTCTTTGTGAGTATGCCAGAGCATGGGTTTTCCCCGAACCAAGGTACATACG 1138
Query 1139 TTAGTGTTCTTGGTGCCTCTTCTCTTAG-GCAGTTATTGAGTTTCGGGCGCCAGATTCAC 1197
||||||||||||||| |||||||||| | ||||||| |||||| ||| ||||| |||||
Sbjct 1139 TTAGTGTTCTTGGTGTCTCTTCTCTT-GTGCAGTTACTGAGTTGCGGACGCCAAATTCAT 1197
Query 1198 GGCATGCTAATCAAGAATGGCTGCAAAACTGACGTATTTTTGGGGAACGCGTTGATTGAC 1257
||||||||||| |||||||||||| |||||| | || |||||||||| ||||||||||||
Sbjct 1198 GGCATGCTAATTAAGAATGGCTGCGAAACTGGCATAGTTTTGGGGAATGCGTTGATTGAC 1257
Query 1258 TTTTATGCAAAATGTGGTAGTCTGGAAGATTCCCGCCTATGCTTTGATTATATACGTGAT 1317
|||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1258 TTTTATGCTAAATGTGGTAATCTGGAAGATTCCCGCCTATGCTTCGATTATATACGTGAT 1317
Query 1318 AAGAACATTGATTGTTGGAATGCACTGCTTTCGGGTTATTCCAATAAAGATGGTCCAATT 1377
|||||||||| |||||||||||| ||||||||||||||| ||||||| |||||||| |||
Sbjct 1318 AAGAACATTGTTTGTTGGAATGCGCTGCTTTCGGGTTATGCCAATAAGGATGGTCCGATT 1377
Query 1378 TGTCTCTCTTTGTTTCTGCAAATGCTTCAGATGGGTTTCAGGCCAACTGAATATACTTTT 1437
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1378 TGTCTCTCTTTGTTTCTGCAAATGCTTCAAATGGGTTTCAGGCCAACTGAATATACTTTT 1437
Query 1438 TCGACGACCCTCAAATCTTGTTGTGTCACAGAGTTACAACAGCTGCACTCTGTTATTGTG 1497
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1438 TCGACGGCCCTCAAATCTTGTTGTGTCACAGAGTTACAGCAGCTGCACTCTGTTATTGTG 1497
Query 1498 AGAATGGGATATGAAGATAATGACTATGTCTTAAGCTCTCTTATGAGATCGTATGCCAAA 1557
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1498 AGAATGGGATATGAAGATAATGACTATGTCTTAAGCTCTCTTATGAGATCCTACGCCAAA 1557
Query 1558 AATCAACTGATGAGTGATGCTCTTTTTCTGCTGGACTGGGCTAGCGGACCAACTTCTGTT 1617
||||||||||||| |||||||||| |||||||||| ||||||||||| |||||||| ||
Sbjct 1558 AATCAACTGATGAATGATGCTCTTCTTCTGCTGGATTGGGCTAGCGGGCCAACTTCGGTC 1617
Query 1618 GTCCCATTGAACATTGTTGCCGGAATCTATAGCAGAAGAGGCCAGTACCATGAATCTGTG 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GTCCCATTGAACATTGTTGCCGGAATCTATAGCAGAAGAGGCCAGTACCATGAATCTGTG 1677
Query 1678 AAGCTAATTTCGACACTAGAACGACCCGACACTGTATCTTGGAACATTGCAATTGCAGCC 1737
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1678 AAGCTGATTTCGACACTAGAACAACCCGACACTGTATCTTGGAACATTGCAATTGCGGCC 1737
Query 1738 TGCTCTCGTTCTGATAACCATGGAGAGGTTATCGATCTTTTCAAACACATGCTTCAATCA 1797
||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1738 TGCTCTCGTTCTGATTACCATGAAGAGGTTATCGAACTTTTCAAACACATGCTTCAATCA 1797
Query 1798 AACATCCGCCCTGATAACTACACATTCGTTAGTATCTTAAGTTTGTGCTCTAAGCTCTGT 1857
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1798 AACATCCGCCCTGATAAGTACACATTCGTTAGTATCTTAAGTTTGTGTTCTAAGCTCTGT 1857
Query 1858 GACCTTACGCTTGGGAGTTCTATTCATGGTTTGATCACCAAAACAGATTTCAGCTGCGCT 1917
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GACCTTACTCTTGGGAGTTCTATTCATGGTTTGATCACCAAAACAGATTTCAGCTGCGCT 1917
Query 1918 GACACATTTGTATGCAACGTACTAATTGACATGTATGGGAAATGCGGAAGCATTAGGAGT 1977
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 GACACATTTGTATGTAACGTACTAATTGACATGTATGGGAAATGCGGAAGCATTAGGAGT 1977
Query 1978 GTAATCAAAGTTTTTGAAGAAACAAGAGAGAAAAACCTCATTACATGGACGGCATTGATT 2037
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 GTAATGAAAGTCTTTGAAGAAACAAGAGAGAAAAACCTCATTACATGGACGGCATTGATT 2037
Query 2038 TCGTCTCTTGGCATCTATGGATATGGACATGAGGCACTTGAAAAGTTTAAGGAAACACTG 2097
|||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2038 TCGTGTCTTGGCATCCATGGATATGGACAGGAGGCACTTGAAAAGTTTAAGGAAACACTG 2097
Query 2098 TCTTTGGGTTTTAAGCCAGATCGTGTCTCTTTCATCTCTATTCTAACTGGTTGCAGACAT 2157
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 2098 TCTTTGGGTTTTAAGCCAGATCGTGTCTCGTTCATCTCTATTCTAACTGCTTGCAGACAT 2157
Query 2158 GGTGGTATGGTAAAAGAAGGAATGGATTTGTTTCAGAAAATGAAGGATTACGGTATTGAG 2217
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 2158 GGTGGTATGGTAAAAGAAGGAATGGGTTTGTTTCAGAAAATGAAGGATTACGGTGTTGAA 2217
Query 2218 CCAGAAATGGATCATTATCGTTGCGCCGTTGATCTTCTGGCAAGAAACGGTTACCTAAAG 2277
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 2218 CCAGAAATGGATCATTATCGTTGCGCCGTTGATCTTTTGGCAAGAAATGGTTACCTGAAG 2277
Query 2278 GAAGCTGAGCATCTGATTCACAGAA-TGCCTTTCCCTGCAGATGCGCCTGTATGGCGTAC 2336
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 2278 GAAGCTGAGCATCTGATTCGG-GAAATGCCTTTCCCTGCAGATGCGCCTGTATGGCGTAC 2336
Query 2337 GTTTCTTGATGGTTGCAATAGATTTTCAGAAGAACAGAGAAACACTCTCAATGTCGTCTC 2396
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2337 ATTTCTTGATGGTTGCAATAGATTTGCAGAAGAACAGAGAAACACTCTCAATGTCGTCTC 2396
Query 2397 TTTTCAGTAGTTGAAGAGAGTAGAATTGGAAGAGAAGTGCGAAT 2440
||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2397 TTTTCAGTAGTTGAAGAAAGTAGAATTGGAAGAGATGTGCGAAT 2440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121334717265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5