BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486311
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58600.1 | Symbols: | Adaptin ear-binding coat-associated p... 1877 0.0
> AT3G58600.1 | Symbols: | Adaptin ear-binding coat-associated
protein 1 NECAP-1 | chr3:21668515-21671167 REVERSE LENGTH=1308
Length=1308
Score = 1877 bits (1016), Expect = 0.0
Identities = 1153/1215 (95%), Gaps = 25/1215 (2%)
Strand=Plus/Plus
Query 1 ACACCTAACGCGAAACCTCTGCGTTTCGAATCGTCTTCGCGACTCGTGTGAGATTGTTGT 60
|||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||
Sbjct 12 ACACCTAACGCGAAACCTCTACGTTTC--TTCGTCTTCGCGACTC--GTGAGATTGTTGT 67
Query 61 AATCACAGTTGGGGAAAGACTTAACATTTAAGATTTACGGGTGTGTTTGATCGATTAGTC 120
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 68 AATCACAGTTCGGGAAAGACTTAACATTTAAGATTTACGGGTTTGTTTGATCGATTAGTC 127
Query 121 CCATCTGGGTTTTTTCTTCAAGTTAAATTCTTTGTTTCTGAGATGGATCAAGCTTCGTCT 180
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TCATCTGGG-TTTTTCTCCAAGTTAAATTCTTTGTTTCTGAGATGGATCAAGCTTCGTCT 186
Query 181 TCTT---C------GGAAGGCAAGAAATCTTTCACTGATCCTGTGACTGTCGATGATAAC 231
|||| | ||||| |||||| |||| |||||||||||||| |||||||||||||
Sbjct 187 TCTTCGACTATGGAGGAAGACAAGAAGTCTTCCACTGATCCTGTGAATGTCGATGATAAC 246
Query 232 GAGGAGAGGGAAGCTATAGAGATTGCTCTATTCCAAGTACCTGAATGCTATGTTTATTTG 291
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 247 GAGGAGAGAGAAGCTATAGAGATTGCTCTGTTCCAAGTGCCTGAATGCTATGTTTATTTG 306
Query 292 ATACCTCCAAGGAAAACCGCAGCTTCATACAGAGCAGATGAGTGGGACGTGAACAAATGG 351
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 307 ATACCTCCAAGGAAAACCGCAGCTTCGTACAGAGCAGATGAGTGGGACGTGAACAAATGG 366
Query 352 GCATGGGAAGGAGCTTTGAAAGTGGTGAGCAAAGGAGAAGAATGCATTATTAAACTTGTA 411
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 367 GCATGGGAAGGAGCTTTGAAAGTGGTGAGCAAAGGAGAAGAATGCATTATAAAACTAGTA 426
Query 412 GATAAAACCACAGGGGAACTTTACGCTCAGGCTTTTCTGCGAGAGGGTGAACTTCATCCA 471
|||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 427 GATAAAACCACAGGGGAACTTTACGCTCAGGCATTTCTAAGAGAGGGGGAACTTCATCCT 486
Query 472 GTAGAAGCCGTAATCGACAGTAGCAGATATTTTGTTCTCCGTGTTGAAGAAAAGATAGAT 531
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GTAGAAGCAGTAATCGACAGTAGCAGATATTTTGTTCTCCGTGTTGAAGAAAAGATAGAT 546
Query 532 GGTCGTGTTCGACATGCTTTTATCGGACTCGGATTCCGGGAAAGAACAGAAGCATATGAT 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GGTCGTGTTCGACATGCTTTTATCGGACTCGGATTCCGGGAAAGAACAGAAGCATATGAT 606
Query 592 TTCCAAGCAGCACTACATGACCATATGAAGTATTTGAACAAGAAGAAAACAGCAGAAGAA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TTCCAAGCAGCACTACATGACCATATGAAGTATTTGAACAAGAAGAAAACAGCAGAAGAA 666
Query 652 ATGGAACAACACTTTCAAAACACTTCATCTGTTGATTACAGCTTAAAGGAAGGAGAAACC 711
||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 667 ATGGAACAACACTATCAGAACACTTCATCCGTTGATTACAGCTTAAAGGAAGGAGAAACC 726
Query 712 ATTGTTCTCCAGCTCAAAAATAGAAGCGATAAAGACACCAAGTCAAAAACGGTAGAGAAG 771
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 727 ATTGTTCTCCAACTCAAAAATAGAAGCGATAAAGACAGCAAGTCAAAAACGGTAGAGAAG 786
Query 772 AGTCTGGGCAATCTCTCGTTGGAGGATAAGGGCAAGTCAATAGAAACCACCATTCCTTCA 831
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 787 AGTCTGGGCAATCTCTCGTTGGAGGATAAAGGCAAGTCAATAGAAACCACCATTCCTTCA 846
Query 832 ATCATCCCACCACCGCCACCTCCTGGACCGCTTTCCCCTGTCACAACCGCTCAGAAGTCC 891
||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 847 ATCATCCTGCCACCTCCACCTCCGGGACCGCTTTCCCCTGTCACAACTGCTCAGAAGTCC 906
Query 892 CCGTCAAATCTGCCACCAAGCCTCAGCCTCCAAAGATCGTCTGAACAACAAGATTTAGAT 951
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CCGTCAAGTCTGCCGCCAAGCCTCAGCCTCCAAAGATCGTCTGAACAACAAGATTTAGAT 966
Query 952 ACAAAGCGagaagaagaaga-gaaga-aagaa-ga---CCTAAAAGCCAAAGATGGAGGG 1005
|||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||
Sbjct 967 ACAAAGCGAGAAGAAGAAGAAGAAGAGAAGAAAGAAGACCTAAAAGCCAAAGATGGAGGG 1026
Query 1006 GTTGAAGATGCACCAGATGATGACTTTGGAGATTTCCAAGCTGCGGGTTGATTTAAACTT 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GTTGAAGATGCACCAGATGATGACTTTGGAGATTTCCAAGCTGCGGGTTGATTTAAACTT 1086
Query 1066 ATAATCTTTTT-ACCATACACAAAGATCGTTTTATAAGTAATG--ACTGATCAAAGTTTG 1122
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1087 ATAATCTTTTTTACCATACACAAAGATCGTTTTATAAGTAATGTGACTGATCAAAGTTTG 1146
Query 1123 GATTGTTTGCTACTGAGAGCTTATCTTCTGTGTACAATTCCAAAATACAAGCCTACTTCT 1182
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1147 GATTGTTTGCTACTGAGAGCTTATCTTCTGT--ACAATTCCAAAATACAAGCCTATTTCT 1204
Query 1183 CTGAACTTTTGATTA 1197
|||||||| ||||||
Sbjct 1205 CTGAACTTGTGATTA 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5