BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486312
Length=2060
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58610.1 | Symbols: | ketol-acid reductoisomerase | chr3:21... 3188 0.0
> AT3G58610.1 | Symbols: | ketol-acid reductoisomerase | chr3:21671433-21674841
FORWARD LENGTH=2106
Length=2106
Score = 3188 bits (1726), Expect = 0.0
Identities = 1922/2012 (96%), Gaps = 32/2012 (2%)
Strand=Plus/Plus
Query 31 TGAGTCTGTGACCCTAATTTCAGAGCTCTCTTCTCTTTGCGCAGTCAATTTGCTACAACT 90
||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 63 TGACTCTGCGACCCTAATTTGTGAGCTCTCTTCTCTTTGCGCAGTCAATTTGCTACAACT 122
Query 91 GAGAAAATGGCGGCTGCGACTTCATCCATCGCTCCTTCTCTTTCATGCCCATCTCCTTCT 150
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TAGAAAATGGCGGCGGCTACTTCATCCATCGCTCCTTCTCTTTCATGCCCATCTCCTTCT 182
Query 151 TCTTCCTCCAAAACCCTTAGGTCTTCGAAAGCCAGAACCTTGGCTCTTCCCAATATCGGT 210
||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 183 TCTTCATCCAAAACCCTTTGGTCTTCCAAAGCCAGAACCTTGGCTCTACCCAATATCGGT 242
Query 211 TTCCTCTCGTCTTCTTCCAAGTCTCTGAGGTCGCTTACTGCCACCGTCGCTGGAAATGGT 270
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 243 TTCCTCTCGTCTTCTTCCAAGTCTCTGAGGTCGCTTACTGCCACCGTCGCTGG-AA---- 297
Query 271 ATTGGTTCCGCCACTGGATCCTCCCTTGCCGCTCGTATGGTTTCGTCGTCGGCGGTCAAA 330
| ||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 298 A-TGG---CGCCACTGGATCCTCCCTTGCCGCTCGCATGGTTTCTTCGTCTGCGGTCAAA 353
Query 331 GCCCCTGTTTCTCTCGATTTCGAGACATCTGTCTTCAAAAAGGAGAAAGTTTCTCTTGCT 390
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 354 GCCCCTGTTTCTCTCGATTTTGAGACATCTGTCTTCAAAAAGGAGAAAGTTTCTCTTGCT 413
Query 391 GGTTATGAAGAGTACATTGTGAGAGGAGGAAGGGATTTGTTCAAGCATCTCCCAGATGCT 450
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 414 GGTTACGAAGAGTACATTGTGAGAGGAGGAAGAGACTTGTTCAAGCATCTCCCAGATGCT 473
Query 451 TTCAAGGGGATTAAGCAGATAGGTGTTATTGGCTGGGGATCTCAGGGACCTGCCCAAGCT 510
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 474 TTCAAGGGGATTAAGCAGATTGGTGTGATTGGCTGGGGATCTCAGGGACCTGCCCAGGCT 533
Query 511 CAGAATTTAAGAGATTCACTTGTGGAGGCAAAGTCTGACATTGTTGTCAAGATTGGGCTC 570
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 534 CAGAATTTAAGGGATTCACTTGTGGAGGCAAAGTCTGACATTGTTGTCAAGATTGGTCTC 593
Query 571 AGAAAAGGGTCTCGCTCATTTGAGGAGGCACGTGCTGCTGGCTTCACTGAAGAAAGTGGT 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AGAAAAGGGTCTCGCTCATTTGAGGAGGCACGTGCTGCTGGCTTCACTGAAGAAAGTGGT 653
Query 631 ACTTTGGGTGATATATGGGAAACTATCTCTGGCAGCGATCTTGTATTGCTTTTGATCTCT 690
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 654 ACTTTGGGTGATATATGGGAAACTATCGCTGGCAGTGATCTTGTATTGCTTTTGATCTCT 713
Query 691 GATGCTGCTCAAGCTGATAACTATGAGAAAATATTCTCTCACATGAAGCCAAACAGCATT 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GATGCTGCTCAAGCTGATAACTATGAGAAAATATTCTCTCACATGAAGCCAAACAGCATT 773
Query 751 CTCGGTTTATCACACGGGTTTCTACTAGGGCATTTACAGTCCTCAGGACTCGATTTCCCA 810
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 774 CTTGGTTTATCACACGGGTTTCTACTAGGGCATTTACAGTCCTCGGGACTCGATTTCCCA 833
Query 811 AAGAACATCAGTGTGGTCGCTGTATGCCCTAAGGGAATGGGTCCTTCTGTGAGGAGGCTT 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AAGAACATCAGTGTGGTCGCTGTATGCCCTAAGGGAATGGGTCCTTCTGTGAGGAGGCTT 893
Query 871 TACGTCCAAGGAAAAGAAATCAACGGTGCTGGAATCAACGCCAGTTTTGCAGTCCACCAG 930
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 894 TACGTCCAAGGAAAAGAAATTAACGGTGCTGGAATCAACGCCAGTTTTGCAGTCCACCAG 953
Query 931 GATGTTGATGGTAGAGCCGCCGATGTTGCACTGGGATGGTCAGTAGCACTTGGTTCTCCT 990
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 954 GATGTTGACGGTAGAGCCGCCGATGTTGCATTGGGATGGTCAGTAGCACTTGGTTCTCCG 1013
Query 991 TTTACTTTTGCTACTACTCTTGAACAAGAGTACAGGAGTGACATCTTTGGAGAAAGAGGA 1050
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1014 TTTACTTTTGCTACTACTCTTGAACAGGAGTACAGGAGTGACATCTTTGGAGAAAGAGGA 1073
Query 1051 ATTTTGCTTGGTGCGGTTCACGGAATTGTGGAGTCTCTGTTTAGAAGGTATACTGAAAAT 1110
|||||||||||||| ||||||||||| |||||||||||||||||||| || || ||||||
Sbjct 1074 ATTTTGCTTGGTGCTGTTCACGGAATCGTGGAGTCTCTGTTTAGAAGATACACCGAAAAT 1133
Query 1111 GGGATGAGTGAAGACTTGGCTTACAAGAACACAGTAGAATGCATCACAGGAACAATTTCG 1170
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GGGATGAGTGAAGACTTGGCTTACAAGAACACAGTAGAATGCATCACAGGAACAATTTCA 1193
Query 1171 AGAACTATCTCTACCCAGGGAATGTTGGCTGTTTACAACTCCTTGTCTGAAGAAGGTAAA 1230
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1194 AGGACTATCTCTACCCAGGGAATGTTGGCTGTGTACAACTCCTTGTCTGAAGAAGGTAAA 1253
Query 1231 AAAGATTTTGAGACTGCATACAGCGCATCCTTCTATCCTTGTATGGAGATTCTCTATGAA 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AAAGATTTTGAGACTGCATACAGCGCATCCTTCTATCCTTGTATGGAGATTCTCTATGAA 1313
Query 1291 TGTTATGAGGATGTACAAAGTGGCAGTGAAATCAGAAGTGTTGTCTTAGCTGGTCGTCGC 1350
||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct 1314 TGTTACGAGGATGTACAAAGTGGCAGCGAAATCCGAAGTGTTGTCTTAGCCGGTCGTCGC 1373
Query 1351 TTCTATGAGAAA-GAAGGCTTGCCAGCATTCCCAATGGGAAATATTGACCAGACAAGAAT 1409
|||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1374 TTCTATGA-AAAGGAAGGCTTGCCAGCATTCCCTATGGGAAATATTGACCAGACAAGAAT 1432
Query 1410 GTGGAAGGTGGGTGAACGCGTCAGGAAGTCCAGACCTGCTGGTGACTTGGGTCCATTGTA 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GTGGAAGGTGGGTGAACGCGTCAGGAAGTCCAGACCTGCTGGTGACTTGGGTCCATTGTA 1492
Query 1470 TCCCTTCACCGCTGGAGTTTATGTAGCACTTATGATGGCTCAGATTGAGATCTTGAGGAA 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TCCCTTCACCGCTGGAGTTTATGTAGCACTTATGATGGCTCAGATTGAGATCTTGAGGAA 1552
Query 1530 GAAAGGTCACTCTTACTCAGAAATCATCAACGAGAGTGTGATTGAATCCGTGGACTCTCT 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 GAAAGGTCACTCTTACTCAGAAATCATCAACGAGAGTGTGATTGAATCCGTGGACTCTCT 1612
Query 1590 AAACCCATTTATGCACGCCAGGGGAGTGTCCTTCATGGTTGACAACTGCTCGACCACAGC 1649
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1613 AAACCCATTTATGCACGCCAGGGGAGTGTCCTTCATGGTTGACAACTGCTCAACCACAGC 1672
Query 1650 AAGACTGGGTTCGAGGAAATGGGCCCCGCGGTTTGACTACATCCTGACCCAACAAGCTCT 1709
|||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1673 AAGATTGGGTTCGAGGAAATGGGCGCCACGGTTTGACTACATCCTGACCCAACAAGCTCT 1732
Query 1710 TGTGGCTGTGGACAGTGGTGCAGCTATCAACAGAGACCTGATAAGTAACTTCTTCTCGGA 1769
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||
Sbjct 1733 TGTGGCTGTGGACAGTGGTGCAGCAATCAACAGAGACCTAATCAGTAACTTCTTCTCTGA 1792
Query 1770 TCCAGTCCATGGTGCCATTGAGGTCTGCGCACAACTCAGGCCTACCGTTGATATCTCTGT 1829
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1793 TCCAGTCCATGGTGCCATTGAGGTCTGCGCACAGCTCAGGCCTACCGTTGATATCTCTGT 1852
Query 1830 GCCTGCTGATGCAGACTTTGTTCGACCTGAGTTGCGTCAATCTAGCAACTGAGTGAAGGG 1889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 GCCTGCTGATGCAGACTTTGTTCGACCTGAGTTGCGTCAATCTAGCAACTGAGTGAAGGG 1912
Query 1890 TTGAAAGTTTGTGAGAGTCTCTTATTTGTAATCGGAGGTTTAAGTAAGTCGAGAGTTTGT 1949
|||||||||||| || |||||||||||||||||||| | | ||||||||||||||||
Sbjct 1913 TTGAAAGTTTGTCAG--TCTCTTATTTGTAATCGGAG-TAT---TAAGTCGAGAGTTTGT 1966
Query 1950 GATGTTTT-TTAGGGGTGACTGTTT----------A----TTATGTTTCTTTGCTTTGGT 1994
|||||||| ||||| |||||||||| | |||||| |||||||||||||
Sbjct 1967 GATGTTTTCTTAGGCGTGACTGTTTGTTTTGTTTGAAGGATTATGTCTCTTTGCTTTGGT 2026
Query 1995 CTTAAAATCTACTTAAATCAATAAAATAGTTT 2026
||||||||||||||||||||||||||||||||
Sbjct 2027 CTTAAAATCTACTTAAATCAATAAAATAGTTT 2058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102107908530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5