BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486315
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58630.1 | Symbols: | sequence-specific DNA binding transcr... 2076 0.0
> AT3G58630.1 | Symbols: | sequence-specific DNA binding transcription
factors | chr3:21683568-21685941 REVERSE LENGTH=1392
Length=1392
Score = 2076 bits (1124), Expect = 0.0
Identities = 1324/1415 (94%), Gaps = 35/1415 (2%)
Strand=Plus/Plus
Query 1 GCTCACGGTTTAGTACATGCACACAAAGCAAAAACGCTGGTTTGt-ttttt----tAAAA 55
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1 GCTCACGGTTTAGTACATGCACACAAAGCAAAAACGCTGGTTTGTCTTTTTAAAAAAAAA 60
Query 56 GAACTTCG-TTCGTCGTCAATTCCGTTACCGTCACCGTCACCGTGACTGTCCACCTCCGT 114
|||||||| ||| || ||||||||||||||||||| |||||| | | | |||||||||
Sbjct 61 GAACTTCGTTTC-TCTTCAATTCCGTTACCGTCACTGTCACC--G--T-T-CACCTCCGT 113
Query 115 TTATCTCATCCTCACCGTTCATCTTCTCCGATCTAACTCGCCGTCGTTCACCGTATGATG 174
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||
Sbjct 114 TTATCTCATCCTCACCGTTCATCTTCTTCGATCTAACTCGCCGTCGTTCACCTTATAATG 173
Query 175 GACGCCGTCAACGATTCCTTTTCGCCGGGATCTTCTCGTCCTTCGCCGTCGACGCTTTCT 234
||| ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 174 GACACCGTCAACGATTCCTTTTCGCCGGGATCTTCCCGACCTTCGCCGGCGACGCTTTCT 233
Query 235 CGTGAAGATTGCTGGAGCGAGGAAGCGACCTTCACGCTAATCCAAGCCTGGGGTAATCGC 294
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 234 CGTGAAGATTGCTGGAGCGAGGAAGCGACCTTCACGCTCATCCAAGCCTGGGGTAATCGC 293
Query 295 TACGTCGAGCTTAGCCGTGGTAATCTCCGTCAGAAACACTGGCAAGAGGTGGCTAACGCC 354
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TACGTCGACCTCAGCCGAGGTAATCTCCGTCAGAAACACTGGCAAGAGGTGGCTAACGCC 353
Query 355 GTTAACGACCGTCACTACAACACCGGCCGAAACGTTTCCGCCGCCAAATCGCAGCCGTAT 414
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 354 GTTAACGACCGTCACTACAACACCGGTCGAAACGTTTCCGCCGCCAAATCGCAGCCGTAT 413
Query 415 CGCACCGACGTTCAGTGTAAAAACCGGATCGATACTTTGAAGAAGAAGTTCAAAGTCGAG 474
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 414 CGCACCGACGTTCAGTGTAAAAACCGGATCGATACTCTGAAGAAGAAGTACAAAGTCGAG 473
Query 475 AAGGCTAGGGTTTCCGAATCCAATCCCGGTGCATACATCAGCCCTTGGCCTTTCTTCTCC 534
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 474 AAGGCTAGGGTTTCGGAATCCAATCCCGGTGCCTACATCAGCCCTTGGCCTTTCTTCTCC 533
Query 535 GCTCTCGATGACCTTCTCCGGGAAAGCTTTCCGACGTCTAGTAATCCTGATTCAACTGAT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GCTCTCGATGACCTTCTCCGGGAAAGCTTTCCGACGTCTAGTAATCCTGATTCAACTGAT 593
Query 595 AACATCCCG-AGCCAGAGGCTATCGCTTCCGATGGCGATTATTCCAGTTCCGGTCGCTCC 653
||||||||| | |||||||||||| ||||||||| | |||| ||||||||||||||||||
Sbjct 594 AACATCCCGCA-CCAGAGGCTATCACTTCCGATGTCCATTAATCCAGTTCCGGTCGCTCC 652
Query 654 ACGATCGGCGATCCCCAGACGTCCGGCGACGTCGCCGGCGATTATACCTCACGTCGGTGA 713
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 653 ACGATCGGCGATCCCCAGACGTCCGGCGACATCGCCGGCGATTATACCTCACGCCGGTGA 712
Query 714 CGATTTACTCGGATTCCGCGGAAATCTAAACGCATTCGCGGCAGCCGCAGCGGCGGCGGC 773
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 713 CGATTTACTCGGATTTCGCGGGAATCTCAACGCATTCGCGGCAGCCGCAGCGGCGGCGGC 772
Query 774 GTGTCCGGCGTCTGAGGATGATTCGGAAGGTTCAAGGTCTAGATCGAGCGGGCGAAGCGG 833
||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 773 GTGTCCGGCGTCTGAAGATGACTCGGAAGGTTCAAGGTCTAGATCGAGCGGTCGTAGCGG 832
Query 834 AAGTAACAAGAAGCGGGAGAGGGAAATTGAGAAGAAGCAAGGTTACAAGGAAGTTGCCGA 893
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 833 GAGTAACAAGAAGCGGGAGAGGAAAATTGAGAAGAAGCAAGGCTACAAGGAAGTTGCCGA 892
Query 894 CGCAATTGAGAGGCTTGGACAGATATACGAGAGAGTCGAGGAGAGGAAGAGGAAGGAAAT 953
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 893 CGCAATTGAGAGGCTTGGACAGATATACGAGAGAGTCGAGGAGAAGAAGAGGAAGGAAAT 952
Query 954 GGTTGAATTGGAGAAGCAAAGAATGCGATTTGCTAAGGAATTGGAATGTCATAGGATGCA 1013
|||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||||||
Sbjct 953 GGTTGAATTGGAGAAGCAGAGAATGAGATTCGCTAAGGAATTGGAATGCCATAGGATGCA 1012
Query 1014 ACTGTTCACTGAGATGCAGGTACGTCTTCATAAGCTCCGGCGTACCTCTGGCTCCAAAGG 1073
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 ACTGTTCACGGAGATGCAGGTACGTCTTCATAAGCTCCGGCGTACCTCTGGCTCCAAAGG 1072
Query 1074 ACCGACTTCCTCCGCCTCCGCCGCTCTTGATTATGGGATGATAGACTTTCC-TAGTTACT 1132
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1073 ACCGACTTCCTCCGCCTCCGCCGCTCTTGATTATGGGATGATGGA-TTTCCCTAGTTACT 1131
Query 1133 TCTA-ATGGCATCATGAGTTTGTGATTGTAGCCATT--GATGAAGATGGGAGAAGTCAAC 1189
|||| | | ||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 1132 TCTAGA-G-CATCATGAGTTTGTGATTGTAGCCATTTTGATGAAGATGAGAGAA---AG- 1185
Query 1190 ATCTAAGCGTTCTTCCACCAACCAATAGAAGATATGGTAACAAAGAAAAATGAGTTTGTC 1249
|| | |||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1186 -TC-A-GCGTTCTTCCACCAACCAATAGAAGATATGGTAACAAAGAAACATGAGTTTCTC 1242
Query 1250 TTTATTTTGTAAATTTTTTACTCTTTTAGAAGATTCCGATTCCAACCCATGATTGAAGAG 1309
||| ||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
Sbjct 1243 TTTGTTTTGTAAATTTTA-ACCCTTTTAGAAGATTCCGATTCCAACCCAGGATTGAA-A- 1299
Query 1310 AAAGAAAATTGGTGACTTTATATTGGTATATCTAAACAATGAAACAGTAGAAGAAATAGT 1369
||| ||| |||||||| ||||||||||||||||| |||||||||||||| |||||| |||
Sbjct 1300 AAA-AAA-TTGGTGACGTTATATTGGTATATCTACACAATGAAACAGTACAAGAAACAGT 1357
Query 1370 TTTCAGCAAAATT-TCTTGGTTATTATTGTTTGGT 1403
||||||||||||| | ||||||| |||||||||||
Sbjct 1358 TTTCAGCAAAATTATATTGGTTAGTATTGTTTGGT 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69126150465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5