BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486315 Length=1403 Score E Sequences producing significant alignments: (Bits) Value AT3G58630.1 | Symbols: | sequence-specific DNA binding transcr... 2076 0.0 > AT3G58630.1 | Symbols: | sequence-specific DNA binding transcription factors | chr3:21683568-21685941 REVERSE LENGTH=1392 Length=1392 Score = 2076 bits (1124), Expect = 0.0 Identities = 1324/1415 (94%), Gaps = 35/1415 (2%) Strand=Plus/Plus Query 1 GCTCACGGTTTAGTACATGCACACAAAGCAAAAACGCTGGTTTGt-ttttt----tAAAA 55 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1 GCTCACGGTTTAGTACATGCACACAAAGCAAAAACGCTGGTTTGTCTTTTTAAAAAAAAA 60 Query 56 GAACTTCG-TTCGTCGTCAATTCCGTTACCGTCACCGTCACCGTGACTGTCCACCTCCGT 114 |||||||| ||| || ||||||||||||||||||| |||||| | | | ||||||||| Sbjct 61 GAACTTCGTTTC-TCTTCAATTCCGTTACCGTCACTGTCACC--G--T-T-CACCTCCGT 113 Query 115 TTATCTCATCCTCACCGTTCATCTTCTCCGATCTAACTCGCCGTCGTTCACCGTATGATG 174 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| Sbjct 114 TTATCTCATCCTCACCGTTCATCTTCTTCGATCTAACTCGCCGTCGTTCACCTTATAATG 173 Query 175 GACGCCGTCAACGATTCCTTTTCGCCGGGATCTTCTCGTCCTTCGCCGTCGACGCTTTCT 234 ||| ||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| Sbjct 174 GACACCGTCAACGATTCCTTTTCGCCGGGATCTTCCCGACCTTCGCCGGCGACGCTTTCT 233 Query 235 CGTGAAGATTGCTGGAGCGAGGAAGCGACCTTCACGCTAATCCAAGCCTGGGGTAATCGC 294 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 234 CGTGAAGATTGCTGGAGCGAGGAAGCGACCTTCACGCTCATCCAAGCCTGGGGTAATCGC 293 Query 295 TACGTCGAGCTTAGCCGTGGTAATCTCCGTCAGAAACACTGGCAAGAGGTGGCTAACGCC 354 |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 294 TACGTCGACCTCAGCCGAGGTAATCTCCGTCAGAAACACTGGCAAGAGGTGGCTAACGCC 353 Query 355 GTTAACGACCGTCACTACAACACCGGCCGAAACGTTTCCGCCGCCAAATCGCAGCCGTAT 414 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 354 GTTAACGACCGTCACTACAACACCGGTCGAAACGTTTCCGCCGCCAAATCGCAGCCGTAT 413 Query 415 CGCACCGACGTTCAGTGTAAAAACCGGATCGATACTTTGAAGAAGAAGTTCAAAGTCGAG 474 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 414 CGCACCGACGTTCAGTGTAAAAACCGGATCGATACTCTGAAGAAGAAGTACAAAGTCGAG 473 Query 475 AAGGCTAGGGTTTCCGAATCCAATCCCGGTGCATACATCAGCCCTTGGCCTTTCTTCTCC 534 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 474 AAGGCTAGGGTTTCGGAATCCAATCCCGGTGCCTACATCAGCCCTTGGCCTTTCTTCTCC 533 Query 535 GCTCTCGATGACCTTCTCCGGGAAAGCTTTCCGACGTCTAGTAATCCTGATTCAACTGAT 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 GCTCTCGATGACCTTCTCCGGGAAAGCTTTCCGACGTCTAGTAATCCTGATTCAACTGAT 593 Query 595 AACATCCCG-AGCCAGAGGCTATCGCTTCCGATGGCGATTATTCCAGTTCCGGTCGCTCC 653 ||||||||| | |||||||||||| ||||||||| | |||| |||||||||||||||||| Sbjct 594 AACATCCCGCA-CCAGAGGCTATCACTTCCGATGTCCATTAATCCAGTTCCGGTCGCTCC 652 Query 654 ACGATCGGCGATCCCCAGACGTCCGGCGACGTCGCCGGCGATTATACCTCACGTCGGTGA 713 |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 653 ACGATCGGCGATCCCCAGACGTCCGGCGACATCGCCGGCGATTATACCTCACGCCGGTGA 712 Query 714 CGATTTACTCGGATTCCGCGGAAATCTAAACGCATTCGCGGCAGCCGCAGCGGCGGCGGC 773 ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 713 CGATTTACTCGGATTTCGCGGGAATCTCAACGCATTCGCGGCAGCCGCAGCGGCGGCGGC 772 Query 774 GTGTCCGGCGTCTGAGGATGATTCGGAAGGTTCAAGGTCTAGATCGAGCGGGCGAAGCGG 833 ||||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| Sbjct 773 GTGTCCGGCGTCTGAAGATGACTCGGAAGGTTCAAGGTCTAGATCGAGCGGTCGTAGCGG 832 Query 834 AAGTAACAAGAAGCGGGAGAGGGAAATTGAGAAGAAGCAAGGTTACAAGGAAGTTGCCGA 893 ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 833 GAGTAACAAGAAGCGGGAGAGGAAAATTGAGAAGAAGCAAGGCTACAAGGAAGTTGCCGA 892 Query 894 CGCAATTGAGAGGCTTGGACAGATATACGAGAGAGTCGAGGAGAGGAAGAGGAAGGAAAT 953 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 893 CGCAATTGAGAGGCTTGGACAGATATACGAGAGAGTCGAGGAGAAGAAGAGGAAGGAAAT 952 Query 954 GGTTGAATTGGAGAAGCAAAGAATGCGATTTGCTAAGGAATTGGAATGTCATAGGATGCA 1013 |||||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||||| Sbjct 953 GGTTGAATTGGAGAAGCAGAGAATGAGATTCGCTAAGGAATTGGAATGCCATAGGATGCA 1012 Query 1014 ACTGTTCACTGAGATGCAGGTACGTCTTCATAAGCTCCGGCGTACCTCTGGCTCCAAAGG 1073 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1013 ACTGTTCACGGAGATGCAGGTACGTCTTCATAAGCTCCGGCGTACCTCTGGCTCCAAAGG 1072 Query 1074 ACCGACTTCCTCCGCCTCCGCCGCTCTTGATTATGGGATGATAGACTTTCC-TAGTTACT 1132 |||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| Sbjct 1073 ACCGACTTCCTCCGCCTCCGCCGCTCTTGATTATGGGATGATGGA-TTTCCCTAGTTACT 1131 Query 1133 TCTA-ATGGCATCATGAGTTTGTGATTGTAGCCATT--GATGAAGATGGGAGAAGTCAAC 1189 |||| | | ||||||||||||||||||||||||||| |||||||||| ||||| | Sbjct 1132 TCTAGA-G-CATCATGAGTTTGTGATTGTAGCCATTTTGATGAAGATGAGAGAA---AG- 1185 Query 1190 ATCTAAGCGTTCTTCCACCAACCAATAGAAGATATGGTAACAAAGAAAAATGAGTTTGTC 1249 || | |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 1186 -TC-A-GCGTTCTTCCACCAACCAATAGAAGATATGGTAACAAAGAAACATGAGTTTCTC 1242 Query 1250 TTTATTTTGTAAATTTTTTACTCTTTTAGAAGATTCCGATTCCAACCCATGATTGAAGAG 1309 ||| ||||||||||||| || ||||||||||||||||||||||||||| ||||||| | Sbjct 1243 TTTGTTTTGTAAATTTTA-ACCCTTTTAGAAGATTCCGATTCCAACCCAGGATTGAA-A- 1299 Query 1310 AAAGAAAATTGGTGACTTTATATTGGTATATCTAAACAATGAAACAGTAGAAGAAATAGT 1369 ||| ||| |||||||| ||||||||||||||||| |||||||||||||| |||||| ||| Sbjct 1300 AAA-AAA-TTGGTGACGTTATATTGGTATATCTACACAATGAAACAGTACAAGAAACAGT 1357 Query 1370 TTTCAGCAAAATT-TCTTGGTTATTATTGTTTGGT 1403 ||||||||||||| | ||||||| ||||||||||| Sbjct 1358 TTTCAGCAAAATTATATTGGTTAGTATTGTTTGGT 1392 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69126150465 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5