BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486318
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58660.1 | Symbols: | Ribosomal protein L1p/L10e family | c... 1618 0.0
> AT3G58660.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr3:21701534-21703114 FORWARD LENGTH=1581
Length=1581
Score = 1618 bits (876), Expect = 0.0
Identities = 1074/1165 (92%), Gaps = 32/1165 (3%)
Strand=Plus/Plus
Query 1 ATGACCACCGCAGTTTCGCCGCCGCCGCAGGAGCAGACGGAGCAGCAACTTGTTCCCGCT 60
|||||||||||||||||||||||||||| || | ||||||||||||||||| ||||
Sbjct 41 ATGACCACCGCAGTTTCGCCGCCGCCGC---CGC--A-GGAGCAGCAACTTGTTCACGCT 94
Query 61 TCGCAGACTTCAAGAGTGAGTCCCTATACGGTGG-GTAGCGCCCTCAATGGTCTTACCAA 119
|||||||||||||||||||||||| | || |||| | ||||||||||||||||||| |||
Sbjct 95 TCGCAGACTTCAAGAGTGAGTCCCAAGACAGTGGAG-AGCGCCCTCAATGGTCTTATCAA 153
Query 120 TTGGAGAAGCGACAAATCAAAGACAGAGAAGCCTCAACTTCTCG-AGCAAGACGAGCTCG 178
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 154 TTGGAGAAGCGACAAATCAAAGACAGAGAAGCCTCAACTTCTCGAAG-AAGACGAGCTCG 212
Query 179 TCTACCTAATCGCTT-CTCTGAAGAAGATTCCACAGACGAGCCGTACGAATGCTTACCGT 237
||||||| ||| || || |||||||||||||||||| || |||||||||||||||||||
Sbjct 213 TCTACCTTTTCG-TTACTTTGAAGAAGATTCCACAGAAGACCCGTACGAATGCTTACCGT 271
Query 238 ATCCCTTTACCTCATCCTCTCATCAACCCAACGGAAGATTCGCCGGAGCTTTGTCTCATT 297
|||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||||
Sbjct 272 ATCCCTTTACCTCATCCTCTTATCAACCCGACGGTCGATTCGCCGGAGATTTGTCTCATC 331
Query 298 ATCGACGACAGACCTAAAAGTGGTCTCACCAAAGCTGATGTGATGAAGAAGATCAAATCT 357
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 332 ATCGACGACAGACCTAAAAGTGGTCTCACCAAAGATGATGCGATGAAGAAGATCAAATCT 391
Query 358 GAGAATATTCCGATCACTAAGGTTATTAAGCTTTCGAAGCTGAAGACTGATTACAAGGCG 417
||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||
Sbjct 392 GAGAATATTCCAATCACCAAGGTTATTAAGCTTTCGAAACTGAAGAGTGATTACAAGGCG 451
Query 418 TTCGAAGCGAAGAGGAAACTCTGCGACTCTTACGACATGTTTTTCGCTGATCGGAGGATC 477
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 452 TTCGAAGCGAAGAGGAAACTCTGCGACTCTTACGACATGTTTTTCACTGATCGGAGGATC 511
Query 478 ATTCCTCTGCTTCCGAGGGTGATTGGGAAGAAGTTCTTTGCGAGCAAGAAGATTCCGGTG 537
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 512 ATTCCTCTGCTGCCGAGGGTGATTGGGAAGAAGTTCTTTACGAGCAAGAAGATTCCGGTG 571
Query 538 GCGATTGATTTGAAGCACAAGAACTGGAAACAGCAGATAGAGAAAGCTTGTGGATCTGCT 597
||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 572 GCGCTTGATTTGAAGCACAGGAACTGGAAACATCAGATAGAGAAAGCTTGTGGATCTGCT 631
Query 598 ATGTTCTTCATAAGGACTGGGACGTGTAGTGTCATTAAGGTTGGGAAATTGTCTATGGA- 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 ATGTTCTTCATAAGGACTGGGACGTGTAGTGTCATTAAGGTTGGGAAATTGTCTATGGAT 691
Query 657 ACTTAACGAAATTACTGAGAATGTGATGGCGACATTGAATGGAGTAGTTGAGTTATTGCC 716
| || |||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 692 ATTTGT-GAAATTACTGAGAATGTGATGGCGACATTGAATGGACTAGTTGAGTTCTTGCC 750
Query 717 TAATAAGTGGAAATACGTTAGGTCTTTGCATTTGAAGTTGTCTGAGAGTTTAGCATTGCC 776
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 751 TAATAAGTGGACGTACGTTAGGTCTTTGCATTTGAAGTTGTCTGAGAGTTTAGCTTTGCC 810
Query 777 TATATATCAGTCTGTACCTGATTTGAAGCTCAAAATCGATGCTTTTGCAACCGGAAAGAG 836
||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||
Sbjct 811 TATATATCAGTCTGTTCCTGATTTGAAGCTTAAAATCGATGCTTTTGGGTCTGGAAAGAG 870
Query 837 TGTTGTTAAGGAGGAGAAGGAAGGTGAAGTTGAAGC--T-G---CTG---ATGGTGGAGA 887
||||||| ||||||||||||||||||||||||||| | | ||| ||||||||||
Sbjct 871 TGTTGTTCAGGAGGAGAAGGAAGGTGAAGTTGAAGAAGTTGTTGCTGTTGATGGTGGAGA 930
Query 888 GAAGAGTGTTACAGGGAAGGGAAAGAAGAAGAAAGGTAGGATCCATGAGGTTAGGTATAT 947
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 931 GAAGAGTGTTACAGGGAAGGGAAAGAAGAAGAAAGGTAGGATTCACGAGGTTAGGTATAT 990
Query 948 GGATAGTAATGTAGCTGAGGTGCTTGATGAGGATGAGATTGGTGGTGATGAGGATAACAA 1007
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 991 GGATAGTAATGTAGCTGAGGTGCTTGATGAGGATGAGATTGGTGGTGACGAGGATAATAA 1050
Query 1008 TGAGATTGTTGAGTCTGGGGATaaggaggagaagaagatgaagaagagaaagaaggaggt 1067
||||||||||||||||| | |||| | | ||||||||||||||| |||||||||||
Sbjct 1051 TGAGATTGTTGAGTCTG---A---GGAG-A-A-GAAGATGAAGAAGAGGAAGAAGGAGGT 1101
Query 1068 aagtgaggttgcagagactgagaagccgatgaagaaAGCAGCCAAAGGGAAGTTGAAACC 1127
|||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1102 AAGTGAAGTTGCAGAGAGTGAGAAGCCGATGAAGAAAGCTGCCAAAGGGAAGTTGAAACC 1161
Query 1128 CAATGTTGAGAAGGGGATGATGAAA 1152
|||||||||| ||||| ||||
Sbjct 1162 TGATGTTGAGAAACCGATGAAGAAA 1186
Score = 331 bits (179), Expect = 1e-89
Identities = 256/291 (88%), Gaps = 13/291 (4%)
Strand=Plus/Plus
Query 1164 GAAGAGTAAGGATGGGTTAAAGGCGAAAAAGACGACGCA-GATTGCAAAAGACGAGTCTG 1222
|||||| ||||| || ||||||||||||||||| || | | |||| |||||||| ||||
Sbjct 1279 GAAGAGCAAGGACGGCTTAAAGGCGAAAAAGACAAC-AATGGTTGCGAAAGACGAATCTG 1337
Query 1223 GAGGTGGATTGAAGCCGAAGAGGAAGAAGAGTGTGCTTAGAAAATGAGGCAAAGGAAGAT 1282
| ||||||||||||||||||| | | |||||||||||||| |||||||||| |||||| |
Sbjct 1338 GTGGTGGATTGAAGCCGAAGA-G-A-AAGAGTGTGCTTAGGAAATGAGGCAGAGGAAGGT 1394
Query 1283 CTTGAGTGTTTGCTTTTTTAAATTGAGTATGATTTATGTTTTATTTTCTATCGTAGTTCT 1342
||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1395 CTTGAGTGTTTGC----TT---TTGAGTATGATTTATGTTTTATTTTCTATCGTAGTTCT 1447
Query 1343 TATTACATTTTTGAGCCCTTTCATATCGTGTACTACTTCTATGAAACATCCACCTGGTGA 1402
||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||
Sbjct 1448 TATTACATTTTTGAGCCATTTCATATCTTGTACTACTTCTATGAAACATTGAACTGGTGA 1507
Query 1403 ATGTGG-TTTGATGCTTTTGTGGAAGAAACATACTGCTATGCACCTTTTAA 1452
|||||| ||||||| ||||||||| |||||||||| || | ||||||||||
Sbjct 1508 ATGTGGGTTTGATGGTTTTGTGGAGGAAACATACTACTGTTCACCTTTTAA 1558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71585977170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5