BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486320
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58670.1 | Symbols: | Protein of unknown function (DUF1637)... 1879 0.0
> AT3G58670.1 | Symbols: | Protein of unknown function (DUF1637)
| chr3:21703390-21706079 REVERSE LENGTH=1271
Length=1271
Score = 1879 bits (1017), Expect = 0.0
Identities = 1201/1282 (94%), Gaps = 43/1282 (3%)
Strand=Plus/Plus
Query 1 AGATCAACTTCTGA-T--TCC-TCCGACT-AACAACCATTTCCATCATCGTTTTCCTCCG 55
||||||| |||||| | ||| ||||||| || ||||||||||||||||| |||||||||
Sbjct 1 AGATCAAATTCTGATTCCTCCTTCCGACTAAAAAACCATTTCCATCATCGGTTTCCTCCG 60
Query 56 ATACCTTTCGTCGTCGCCGTTCTTCGGATTTTCACTCTTCTGCTCGAAAGGGCAGTGCTT 115
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATACATCTCCTCGTCGCCGTTCTTCGGATTTTCACTCTTCTGCTCGAAAGGGCAGTGCTT 120
Query 116 GAGAATCATTGAAGAAGGTGATCGCTGGTCCTTAAAGTGTTGATAACTCAAAGCCGTTTT 175
||||||||||||||||||||||||||||| | | || |||||||||||||||||||||
Sbjct 121 GAGAATCATTGAAGAAGGTGATCGCTGGTGC-T---GTTTTGATAACTCAAAGCCGTTTT 176
Query 176 GC-----------T--CAAAGTTAGGAGCTCAAGAACTTGGAGC--TGTCTTCTTTTTGT 220
|| | ||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 177 GCTGAAAGAGGGTTACCAAAGTTAGAAGCTCAAGAACTTGGAGCTGTGTCTTCTTTTTGT 236
Query 221 ATCATGCCATATTTTATTCAGAGGCTTTTCAATACTTGCAAGTCATCTCTCTCACCTAAT 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ATCATGCCATATTTTATTCAGAGGCTTTTCAATACTTGCAAGTCATCTCTCTCACCTAAT 296
Query 281 GGTCCTGTGTCTGAGGAGGCCTTAGACAAGGTTCGCAATGTGTTGGAGAAAATCAAGCCG 340
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 297 GGTCCTGTGTCTGAGGAGGCCTTAGACAAGGTTCGCAATGTCTTGGAGAAAATCAAGCCG 356
Query 341 TCTGATGTTGGTCTCGAACAGGAAGCTCAGTTGGTGCGTAACTGGGCTGGTCCCGGGAAT 400
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||
Sbjct 357 TCTGATGTTGGTCTCGAACAGGAAGCTCAATTGGTGCGTAATTGGCCTGGTCCTGGGAAC 416
Query 401 GAGCGTAATGGAAACCATAATTCTCTGCCAGCAATAAAATACCTTCAGTTACATGAGTGT 460
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GAGCGTAATGGAAACCATCATTCTCTGCCAGCAATAAAATACCTTCAGTTACATGAGTGT 476
Query 461 GACAGCTTCTCGATTGGAATTTTCTGCATGCCACCTGGGTCTATCATACCACTTCATAAT 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GACAGCTTCTCGATTGGAATTTTCTGCATGCCACCTGGGTCTATCATACCACTTCATAAT 536
Query 521 CATCCAGGCATGACAGTGCTAAGCAAGCTTGTTTATGGTTCGATGCACGTGAAGTCGTAT 580
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 537 CATCCAGGCATGACAGTGCTAAGCAAGCTTGTTTATGGTTCAATGCACGTTAAGTCATAT 596
Query 581 GATTGGGCTGAGCCTGACCAATCAGAGCTAGACGATCCATTACAAGCAAGACCTGCGAAG 640
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 597 GATTGGGCTGAGCCTGACCAATCAGAGCTAGACGATCCATTACAAGCAAGACCCGCGAAG 656
Query 641 CTAGTCAAGGATACTGATATGACTGCCCCTTGCCCAGCAACCACTCTATATCCAACAACC 700
|| |||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 657 CTGGTCAAGGATATTGATATGACTTCCCCTAGCCCAGCAACCACTCTATATCCAACAACC 716
Query 701 GGTGGCAATATTCATTGTTTCAAAGCCATTACTCATTGTGCAATCTTCGACATCTTATCT 760
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGTGGCAACATTCATTGTTTCAAAGCCATTACTCATTGTGCAATCTTCGACATCTTATCT 776
Query 761 CCTCCATACTCTTCTACTCATGGCAGACACTGCAACTACTTCCGAAAATCCCCAATGCTA 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CCTCCATACTCTTCTACTCATGGCAGACACTGCAACTACTTCCGAAAATCCCCAATGCTA 836
Query 821 GACTTACCTGGTGAGATTGAAGTGATGAATGGAGAAGTGATCTCAAATGTGACATGGCTC 880
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GACTTACCTGGTGAGATTGAAGTGATGAATGGAGAAGTGATCTCAAATGTGACATGGCTT 896
Query 881 GAAGAGTATCAACCTCCAGATAACTTTGTGATATGGAGAGTTCCGTACAGAGGTCCAGTG 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GAAGAGTATCAACCTCCAGATAACTTTGTGATATGGAGAGTTCCGTACAGAGGTCCAGTG 956
Query 941 ATTAGAAAATGAGAATTACAAAAGAGGTTTAAGCATAT-AAGAAAAGAGCAGAAAGAGAA 999
||||||||||||||| ||||||| ||| |||| ||||| || ||||||||||||||||||
Sbjct 957 ATTAGAAAATGAGAAATACAAAA-AGGATTAAACATATTAA-AAAAGAGCAGAAAGAGAA 1014
Query 1000 AGGAGCTTATTATCAGGAGAATAATTGG-A---------GAGGCTGGCTGCATAATGGTC 1049
||| |||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 1015 AGGTGCTTATGATCAGGAGAATAATTGGTAAACCATTCAGAGGCTGGCTGCATAATGGTC 1074
Query 1050 GAGGTTCTTACATAATTGTGACCACATTAAGTTTCAGCCTATGTCGTTGTATGATAATGT 1109
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1075 GAGGTTCTTACATAATTGTGACCACATTAAGTTCCAGCCTATGTCGTTGTATGATAATGT 1134
Query 1110 TTACTACATACAACTTTATGATTACTTCACTAGTTTAATATTATAATAttttttttCCTA 1169
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1135 TTACTACATACAACTTTATGATTACTTCACTAGTTTAATATTATAAT-TTTTTCCCCCTA 1193
Query 1170 TTTTTATATGCAGCTAGCTGCATAAACAATTGCTCATAAACAGTGTTA-ATTTAGTTATC 1228
|||||||||||||||| | || ||| |||||||||||||||||||| |||||||||||
Sbjct 1194 TTTTTATATGCAGCTA-CA-CA-AAA-AATTGCTCATAAACAGTGTTCTATTTAGTTATC 1249
Query 1229 ATAAATTTTGTTTCCATTAATC 1250
|||||||||||||||||| |||
Sbjct 1250 ATAAATTTTGTTTCCATTGATC 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61445467080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5