BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486322
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58690.1 | Symbols: | Protein kinase superfamily protein | ... 2143 0.0
> AT3G58690.1 | Symbols: | Protein kinase superfamily protein
| chr3:21709170-21711381 FORWARD LENGTH=1537
Length=1537
Score = 2143 bits (1160), Expect = 0.0
Identities = 1330/1410 (94%), Gaps = 20/1410 (1%)
Strand=Plus/Plus
Query 1 cacacacacacactcacac-aAAATCAAAAACAAATTTTCACGAAACCCGATGCTTTAAA 59
||||||||||||||||||| |||| ||||||| ||||||||||||| |||| |||| |||
Sbjct 4 CACACACACACACTCACACAAAAACCAAAAACTAATTTTCACGAAATCCGAAGCTTAAAA 63
Query 60 ATTATTCCTCTACTGTTTCAATTCCATCTCCTCTTCCTCTTGTG-TGGCAATTTCTAGGG 118
||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||
Sbjct 64 ATTATTCCTCTACTGTTTCAATTTCATCTCTTCTTCCTCTTGAGTTGGCAATTTCTAGGG 123
Query 119 TTTTCACATTTTCCttttttttCCCATTTCTGGAAACTGGTAAAA--------------- 163
||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct 124 TTTTCTCATTTTCC-TTTTTTT-CCATTTCTGGAAACTGGTAAAAGGCTTTTTCTTTGTC 181
Query 164 -GTGGGGGAGAAACAAAAATGGAGACAGACGAAGCATACCAAAAGAAAGAACGTGCTGCA 222
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 182 TGTGGGGGAGAAACAAAAATGGAGACAGACGAAGCATACCAAAAGAAAGAGCGAGCTGCA 241
Query 223 CTAGTAGCCATTGTTGTTCTTGCTTGTCTTGCTTTATCTTCTCTGTTCGTCGCCTTTAGC 282
|||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 242 TTAGTAGCCATCGTTGTCCTTGCTTGTCTTGCTTTATCTTCTTTGTTCGTCGCCTTTAGC 301
Query 283 TACTACTGCTATATTCGTAACAAAGTTTCTAAGCGTCACAGAATTAGCAAGAGGTTTGAT 342
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 302 TACTACTGCTATATTCGTAACAAGGTTTCTAAGCGTCACAGAATTAGCAAGAGGTTTGAT 361
Query 343 TGCGAGGAGAAAGGCGATTGTCAAAAAGTACAAGATGTTACTGACAATGGGTTGCAAATT 402
|| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 362 TGTGAGGAAAAAGGCGATTGTCAGAAAGTACAAGATGTTACTGAAAATGGGTTGCAAATT 421
Query 403 TTCACCTTTAAGCAATTGCATTCAGCAACTGGTGGATTTAGCAAGTCTAATGTTGTTGGG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 422 TTCACCTTTAAGCAATTGCATTCAGCAACTGGTGGATTTAGCAAGTCTAATGTGGTTGGG 481
Query 463 CATGGTGGGTTTGGGTTAGTTTATCGCGGTGTGCTTAACGATGGAAGAAAAGTTGCTATT 522
||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 482 AATGGTGGGTTTGGCTTGGTTTATCGTGGTGTGCTTAACGATGGCAGAAAAGTTGCTATC 541
Query 523 AAGTTCATGGATCATGCAGGAAAGCAAGGGGAAGAAGAATTCAAGATGGAGGTTGAGTTA 582
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 AAGCTCATGGATCATGCAGGAAAGCAAGGGGAAGAAGAATTCAAGATGGAGGTTGAGTTA 601
Query 583 CTGAGTCGTCTGCGTTCACCTTACTTGTTGGCACTTCTTGGTTATTGCTCAGACAATAGT 642
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 602 CTGAGCCGTCTGCGTTCACCATACTTGTTGGCACTTCTTGGTTATTGCTCAGACAATAGT 661
Query 643 CATAAGCTGCTTGTGTATGAGTTCATGGCAAATGGCGGTCTGCAAGAACACCTGTATCTT 702
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 662 CATAAGCTGCTTGTGTATGAGTTCATGGCAAATGGTGGTCTGCAGGAACACCTGTATCTT 721
Query 703 ACCAACAGGTCTGGTTCTGTCCCACTGAGATTAGATTGGGAAACTCGGATGAGGATAGCT 762
|||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 722 CCCAACAGGTCTGGTTCTGTCCCACCAAGATTAGATTGGGAAACTAGGATGAGAATAGCT 781
Query 763 GTGGAAGCTGCAAAAGGTTTGGAATATCTCCATGAACAAGTATCACCCCCAGTGATTCAT 822
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 782 GTGGAAGCTGCAAAAGGCTTGGAATATCTCCATGAACAAGTATCACCCCCGGTGATTCAT 841
Query 823 AGAGACTTTAAGAGCAGCAATATTCTGCTGGACAGAAACTTCAATGCCAAAGTATCAGAT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 842 AGAGACTTTAAGAGCAGCAATATTCTGCTGGACAGAAACTTCAATGCCAAAGTTTCAGAT 901
Query 883 TTCGGATTGGCTAAAGTTGGATCAGATAAAGCTGGAGGACACGTTTCTACCCGTGTATTA 942
|| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 902 TTTGGATTGGCTAAAGTCGGATCAGATAAAGCTGGTGGACACGTTTCTACCCGTGTATTA 961
Query 943 GGCACACAAGGATATGTAGCTCCTGAGTACGCTTTAACCGGTCACTTGACTACAAAATCG 1002
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 962 GGCACACAAGGATATGTAGCTCCTGAGTACGCTTTAACTGGTCACTTGACAACAAAGTCG 1021
Query 1003 GATGTCTATAGCTACGGTGTTGTCCTGTTAGAGTTACTAACCGGTAGAGTTCCAGTAGAT 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GATGTCTATAGCTACGGTGTTGTCCTGTTAGAGTTACTAACCGGTAGAGTTCCAGTAGAT 1081
Query 1063 ATGAAGAGAGCTGCAGGAGAAGGTGTTCTTGTCTCTTGGGCTTTGCCTCAATTGGCTGAT 1122
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 ATGAAGAGAGCTACAGGAGAAGGTGTTCTTGTCTCTTGGGCTTTGCCTCAATTGGCTGAT 1141
Query 1123 AGAGAGAAAGTAGTAGACATAATGGATCCAACACTCGAAGGACAATACTCGACAAAAGAA 1182
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1142 AGAGACAAAGTAGTAGACATAATGGATCCAACACTCGAAGGACAATACTCTACGAAAGAA 1201
Query 1183 GTTGTTCAAGTTGCAGCAATAGCAGCAATGTGTGTTCAAGCAGAAGCTGATTACAGACCA 1242
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1202 GTTGTTCAAGTTGCAGCAATAGCAGCAATGTGTGTTCAAGCAGAAGCTGACTACAGACCC 1261
Query 1243 TTAATGGCAGATGTGGTGCAGTCACTGGTTCCATTGGTGAGAAACCGTAGGTCAGCTTCA 1302
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1262 TTAATGGCAGATGTGGTGCAGTCACTGGTTCCATTAGTGAGAAACCGTAGGTCAGCTTCA 1321
Query 1303 AAGCTTAGTGGCTGTTCTAGTAGCTTTAGCTTGGCTCGGTCGCCTAACTCGCCGGGTAAA 1362
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1322 AAGCTTAGTGGCTGCTCTAGTAGCTTTAGCTTGGCTCGGTCTCCTAACTCTCCGGGTAAA 1381
Query 1363 GCAAGCATAGGCTCTCAGTAAATCAATCAA 1392
||||||||||| ||||| | ||| ||||||
Sbjct 1382 GCAAGCATAGGTTCTCAATGAATAAATCAA 1411
Score = 93.5 bits (50), Expect = 5e-18
Identities = 80/93 (86%), Gaps = 8/93 (9%)
Strand=Plus/Plus
Query 1391 AACGGGATTTACTAAAACAGACTATAATGTAACACCTTTGAGTTTTGAGTGATCAAACAT 1450
||||| |||||||||||||||| || |||||| | | | ||||||||||||||||
Sbjct 1446 AACGGTATTTACTAAAACAGACAATGATGTAA-A-C----A--CTTGAGTGATCAAACAT 1497
Query 1451 GGAGTCATAGAGATTATCATCAAATAAACTTTT 1483
|||||||||||||| ||||||||||||||||||
Sbjct 1498 GGAGTCATAGAGATAATCATCAAATAAACTTTT 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73142194065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5