BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486323
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58700.1 | Symbols: | Ribosomal L5P family protein | chr3:2... 1138 0.0
AT2G42740.1 | Symbols: RPL16A | ribosomal protein large subunit... 787 0.0
> AT3G58700.1 | Symbols: | Ribosomal L5P family protein | chr3:21711563-21712955
FORWARD LENGTH=786
Length=786
Score = 1138 bits (616), Expect = 0.0
Identities = 675/703 (96%), Gaps = 6/703 (1%)
Strand=Plus/Plus
Query 37 GTTTTCCCGTCGGCCGGAGATTTATCGCAACCCTAATCCGAAATGGCGTCGGAGAAGAAG 96
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 57 GTTTTCCCGTCGGCCGGAGATATATCGCAACCCTAATCCGAAATGGCGTCGGAGAAGAAG 116
Query 97 CTATCGAACCCAATGAGGGACATCAAAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGT 156
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 117 CTATCGAACCCAATGAGGGACATTAAAGTGCAGAAGCTGGTTCTCAACATCTCCGTTGGT 176
Query 157 GAGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTGTTGGAACAATTGAGTGGTCAGACT 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GAGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTGTTGGAACAATTGAGTGGTCAGACT 236
Query 217 CCTGTTTTCTCCAAGGCTCGATACACTGTTCGTTCTTTTGGTATCAGACGTAATGAGAAG 276
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 237 CCTGTTTTCTCCAAGGCTCGATACACTGTTCGTTCTTTTGGTATAAGACGTAATGAGAAG 296
Query 277 ATTGCTTGCTATGTGACTGTCAGGGGAGAGAAGGCAATGCAGCTCCTTGAGAGTGGACTG 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 297 ATTGCTTGCTATGTGACTGTCAGGGGAGAGAAGGCAATGCAGCTCCTTGAGAGTGGATTG 356
Query 337 AAAGTTAAAGAATATGAACTCTTGAGAAGGAACTTTAGCGACACTGGTTGCTTTGGTTTT 396
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 357 AAAGTTAAAGAATACGAACTCTTGAGAAGGAACTTCAGCGACACTGGTTGCTTTGGTTTT 416
Query 397 GGTATTCAAGAGCACATTGATTTGGGTATCAAGTATGATCCATCAACTGGAATCTACGGT 456
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 417 GGTATTCAAGAGCACATTGATTTGGGTATCAAGTATGATCCATCGACTGGAATCTACGGC 476
Query 457 ATGGACTTCTATGTTGTTCTTGAGCGACCTGGTTACCGTGTGGCACGTCGCAGAAGATGC 516
||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct 477 ATGGACTTCTATGTTGTTCTTGAGCGACCAGGTTACCGTGTTGCGCGCCGCAGAAGATGC 536
Query 517 AAGGCTCGTGTTGGAATCCAGCATAGAGTGACGAAAGATGATGCCATGAAATGGTTCCAG 576
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAGACTCGTGTTGGAATCCAGCATAGAGTGACGAAAGATGATGCCATGAAATGGTTCCAG 596
Query 577 GTGAAATATGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACTGGCTAAA-AAAGTGT 635
||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| |||
Sbjct 597 GTGAAATATGAAGGAGTCATTCTCAACAAGTCTCAGAACATCACTGGTTAAACAAA-TGT 655
Query 636 GTCAAACAAATATCTATAAtctgtttt-ttctttt-gggttcaaatcttactttctcagt 693
|||||||||||| |||| ||||||||| || |||| ||||||||||| || |||||||||
Sbjct 656 GTCAAACAAATAGCTATCATCTGTTTTGTTTTTTTTGGGTTCAAATCGTATTTTCTCAGT 715
Query 694 tttgttttgcttctctgttcttcAGACATTT-GAATTTTCCTT 735
||||||||||||||||||||||||||||||| || ||||||||
Sbjct 716 TTTGTTTTGCTTCTCTGTTCTTCAGACATTTTGA-TTTTCCTT 757
> AT2G42740.1 | Symbols: RPL16A | ribosomal protein large subunit
16A | chr2:17791729-17793082 FORWARD LENGTH=750
Length=750
Score = 787 bits (426), Expect = 0.0
Identities = 540/595 (91%), Gaps = 7/595 (1%)
Strand=Plus/Plus
Query 39 TTTCCCGTCGGCCGGAGAT--TTATCGCAACCCTAA-TCCGAAATGGCGTCGGAGAAGAA 95
||||||||||||||| ||| || ||||||||| || ||| |||||||||||||||||||
Sbjct 25 TTTCCCGTCGGCCGGTGATAATT-TCGCAACCCAAATTCC-AAATGGCGTCGGAGAAGAA 82
Query 96 GCTATCGAACCCAATGAGGGACATCAAAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGG 155
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 83 GCTATCGAACCCAATGAGGGACATTAAAGTGCAGAAGCTGGTTCTCAACATCTCCGTTGG 142
Query 156 TGAGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTGTTGGAACAATTGAGTGGTCAGAC 215
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 143 TGAGAGTGGAGATCGTCTCACCAGAGCCTCCAAGGTTTTGGAACAATTGAGTGGTCAGAC 202
Query 216 TCCTGTTTTCTCCAAGGCTCGATACACTGTTCGTTCTTTTGGTATCAGACGTAATGAGAA 275
||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 203 TCCTGTTTTCTCCAAAGCTAGATACACTGTTCGTTCTTTTGGTATCAGACGTAACGAGAA 262
Query 276 GATTGCTTGCTATGTGACTGTCAGGGGAGAGAAGGCAATGCAGCTCCTTGAGAGTGGACT 335
||| || |||||||| || ||||| || |||||||||||||| || ||||| |||||| |
Sbjct 263 GATCGCATGCTATGTAACCGTCAGAGGTGAGAAGGCAATGCAACTACTTGAAAGTGGATT 322
Query 336 GAAAGTTAAAGAATATGAACT-CTTGAGAAGGAACTTTAGCGACACTGGTTGCTTTGGTT 394
|||||| || ||||| ||||| || ||||| ||||| || |||||||||||||| ||||
Sbjct 323 GAAAGTCAAGGAATACGAACTTCTC-AGAAGAAACTTCAGTGACACTGGTTGCTTCGGTT 381
Query 395 TTGGTATTCAAGAGCACATTGATTTGGGTATCAAGTATGATCCATCAACTGGAATCTACG 454
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 382 TTGGTATTCAAGAACACATTGATTTGGGTATCAAGTACGATCCATCAACTGGAATCTATG 441
Query 455 GTATGGACTTCTATGTTGTTCTTGAGCGACCTGGTTACCGTGTGGCACGTCGCAGAAGAT 514
|||||||||||||||| || || || || ||||| |||||||| |||||||||||||| |
Sbjct 442 GTATGGACTTCTATGTGGTCCTAGAACGTCCTGGCTACCGTGTAGCACGTCGCAGAAGGT 501
Query 515 GCAAGGCTCGTGTTGGAATCCAGCATAGAGTGACGAAAGATGATGCCATGAAATGGTTCC 574
|||||||||||||||| ||||| || ||||| || ||||| ||||| |||||||||||||
Sbjct 502 GCAAGGCTCGTGTTGGTATCCAACACAGAGTAACTAAAGACGATGCAATGAAATGGTTCC 561
Query 575 AGGTGAAATATGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACTGGCTAAAA 629
|||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 562 AGGTGAAATACGAAGGAGTCATTCTCAACAAGTCCCAGAACATCACTGGCTAAAA 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5