BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486325
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58710.1 | Symbols: WRKY69, ATWRKY69 | WRKY DNA-binding prot... 1386 0.0
AT3G58720.2 | Symbols: | RING/U-box superfamily protein | chr3... 78.7 1e-13
> AT3G58710.1 | Symbols: WRKY69, ATWRKY69 | WRKY DNA-binding protein
69 | chr3:21715007-21716916 FORWARD LENGTH=1154
Length=1154
Score = 1386 bits (750), Expect = 0.0
Identities = 905/974 (93%), Gaps = 34/974 (3%)
Strand=Plus/Plus
Query 1 ATGCACCGT--AG-AGCAATTCAAGAATCAGACGACGAAGAAGATGAGACTTACAACGAC 57
||||| ||| || ||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 186 ATGCATCGTAGAGCAGCAATTCAAGAATCGGATGACGAAGAAGATGAGACTTACAACGAC 245
Query 58 GTCGTTCCTGAATCTCCTTCTTCTTGCGAAGACTCAAAGATCTCAAAACCAACTCCAAAG 117
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 246 GTCGTTCCTGAATCTCCTTCTTCTTGTGAAGACTCAAAGATCTCAAAACCAACTCCAAAG 305
Query 118 AAAAGTAGGAGGAACGTAGAGAAGAGAGTTGTCTCAGTTCCGATTGCTGACGTGGAAGGA 177
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 306 AAAAGTAGGAGGAACGTAGAGAAGAGAGTTGTCTCAGTTCCGATAGCTGACGTGGAAGGA 365
Query 178 TCTAAGAGTAGAGGCGAAGTATATCCACCGTCCGATTCATGGGCCTGGAGAAAGTACGGA 237
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TCTAAGAGCAGAGGCGAAGTATATCCACCGTCCGATTCATGGGCCTGGAGAAAGTACGGA 425
Query 238 CAAAAGCCGATCAAAGGCTCGCCTTATCCAAGGGGATATTACAGATGCAGTAGCTCAAAA 297
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 426 CAAAAACCGATCAAAGGCTCGCCTTATCCCAGGGGATATTACAGATGTAGTAGCTCAAAA 485
Query 298 GGATGTCCGGCGAGGAAGCAGGTGGAGAGAAGCCGTGTGGACCCTTCAAAGCTCATGATT 357
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 486 GGATGTCCGGCGAGGAAGCAGGTGGAGAGAAGCCGTGTGGACCCTTCTAAGCTTATGATT 545
Query 358 ACTTACGCCTGCGACCACAACCACCCTTTCCCCTCCTCCTCCGCCAACAACAAATCCCAC 417
|||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||
Sbjct 546 ACTTACGCCTGCGACCACAATCACCCTTTCCCTTCCTCCTCCGCTAACACCAAATCCCAC 605
Query 418 CACCGCTCCTCCGTCGTCCTCAAAACCGCCAAA-AAAGAAGAAGAATACGAAGAAGAGGA 476
|||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |||||
Sbjct 606 CACCGCTCCTCCGTCGTCCTCAAAACCG-CAAAGAAAGAGGAAGAATACGAAGAGGAGGA 664
Query 477 GGAAGAACTGACCGTCACCGCCGCAGAGGAACCGCCGGCAGGACTAGATCTGAGCCACGT 536
|||||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 665 AGAAGAACTAACCGTCACCGCCGCAGAGGAACCACCGGCGGGACTTGATCTAAGCCACGT 724
Query 537 TGATTCTCCGTTGCTCTTAGGTGGCTGCTACAGCGAAATCGGCGAGTTCGGGTGGTTCTA 596
|| || |||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 725 AGACTCACCGTTGCTATTAGGCGGCTGCTACAGCGAAATCGGAGAGTTCGGGTGGTTCTA 784
Query 597 CGACGCGTCGATCTCATCATCATCTGGTTCTTCGAATTTCCTCGACGTAACTCTAGAGAG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CGACGCGTCGATCTCATCATCATCTGGTTCTTCGAATTTCCTCGACGTAACTCTAGAGAG 844
Query 657 AGGTTTTTCAGTAGGCCAAGAGGAAGATGAGTCTTTGTTCGGTGATCTCGGCGATTTACC 716
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 845 AGGTTTTTCAGTAGGCCAAGAGGAAGATGAGTCTTTGTTCGGTGATCTCGGTGATTTACC 904
Query 717 TGATTGCGCCTCCGTGTTCCGCCGTGGGACCGTTGCGACGGAGGAGCAACATCGGAGATG 776
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 905 TGATTGCGCCTCCGTGTTCCGCCGTGGGACTGTTGCGACGGAGGAGCAACATCGAAGATG 964
Query 777 TGATTTTGGCGCCATTCCTTTCTGTGATAGTTCTAGATGAGT--GTGTGT--AGCCAAAA 832
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 965 TGATTTTGGCGCCATTCCTTTCTGTGATAGTTCTAGATGAGTTTGTGTGTGTAGCCAAAA 1024
Query 833 CCAAAA--------C----ttttttt-tt--CCACTGTAAAGGTGTATCAATGGTGGATT 877
|||||| | ||||||| || |||||||||||||||||||||||||||||
Sbjct 1025 CCAAAAGAAAAAAACACAATTTTTTTATTTTCCACTGTAAAGGTGTATCAATGGTGGATT 1084
Query 878 CATATGATTCATTTTATATaaaaaaaaaaaCCCAGATAATAAATTTAATATCATTTGAGA 937
||| | || ||| | | |||| ||| |||| |||||||||||||||||||||||||
Sbjct 1085 CAT-T--TT--TTT-A-A-AAAAGGAAA--CCCAAATAATAAATTTAATATCATTTGAGA 1134
Query 938 GAATTCAAGTACAA 951
||||||||||||||
Sbjct 1135 GAATTCAAGTACAA 1148
> AT3G58720.2 | Symbols: | RING/U-box superfamily protein | chr3:21716866-21717948
REVERSE LENGTH=895
Length=895
Score = 78.7 bits (42), Expect = 1e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 907 ACCCAGATAATAAATTTAATATCATTTGAGAGAATTCAAGTACAA 951
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 895 ACCCAAATAATAAATTTAATATCATTTGAGAGAATTCAAGTACAA 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5