BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486331
Length=2568
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58770.1 | Symbols: | unknown protein; Has 38 Blast hits to... 3345 0.0
> AT3G58770.1 | Symbols: | unknown protein; Has 38 Blast hits
to 36 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 2; Plants - 32; Viruses - 0; Other Eukaryotes
- 4 (source: NCBI BLink). | chr3:21732258-21735327 FORWARD
LENGTH=2722
Length=2722
Score = 3345 bits (1811), Expect = 0.0
Identities = 2355/2603 (90%), Gaps = 96/2603 (4%)
Strand=Plus/Plus
Query 24 AAACTCTTGAAACCtttttttCTCATCTCTGTCTATCTTA-ACTTTCTCTTTCATCTCCT 82
||||||||||||||| ||||||||||||| |||||| || ||||| |||||||||||||
Sbjct 158 AAACTCTTGAAACCTCTTTTTCTCATCTC--TCTATC-TACACTTTATCTTTCATCTCCT 214
Query 83 TCATCGTTCTCTTGTCAAGAAATCGATTATTCCTCTTAGACTTTGTATGAACCATGGAGG 142
||||||||||||| |||||| |||| |||||| | | ||||||| ||| |||||||||
Sbjct 215 TCATCGTTCTCTTCTCAAGATATCG---ATTCCT-TCA-ACTTTGTCTGATCCATGGAGG 269
Query 143 TTGATTACGGTGGATTTTCTATCAGAGAGTACACGAAGAAGGTAAGGAGTGA-AAGCGTG 201
||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 270 TTGATTACGGTGGATTTTCTATCAGAGAGTACACGGAGAAGGTAAGGAGTGATAA-TGAA 328
Query 202 CGGAAATGCTGGCCGTTCGCCGGAGATCTTATTCAGTCGTTTCTTCCTCCGATTACTGTC 261
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 329 CGAAAATGCTGGCCGTTCGCCGGAGATCTTATTCAGTCTTTTCTTCCTCCCATTACTGTC 388
Query 262 TCCAAGTTCCGGTGGTGGTCGCATGAGCTAGCTTCTCTGCTTACGAAATCTCCGGTCTCT 321
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 389 TCCAAGTTCCGGTGGTGGTCGCATGAGCTTGCTTCTCTGCTTACGAAATCTCCGGTCTCT 448
Query 322 G-T--TGA---TGAT---T-C--TCATC---AGGCCAAAGCAAAGTCTAAACCGTGTAAA 366
| | ||| |||| | | || || |||||||||||||| ||| || |||||||
Sbjct 449 GTTGATGATTCTGATCCGTCCTTTCGTCGGAAGGCCAAAGCAAAGACTAGACAGTGTAAA 508
Query 367 AAGCGTTCCATCATCGAAATTTGTGCGACGGCACCGAAAATCCAGTTTGCAGAAGATCAT 426
||||| |||||| ||||||||||||||||||| ||||| |||||||| ||||||||| ||
Sbjct 509 AAGCGCTCCATCGTCGAAATTTGTGCGACGGCGCCGAAGATCCAGTTAGCAGAAGATTAT 568
Query 427 GTGGTGCAC---AAGAAGATCAAAACCACGAAATCCAAAGATTCCGGTCG-TCGGGAATT 482
||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 569 GTGGTGCACAAGAAGAAGATCAAAACCACGAAATCCAAAGATTCCGGT-GATCGGGAATT 627
Query 483 TGCTAACAAGGTTAATCAATTCAAAGAACAAGCTCAACAAAAAGTGGATCATGTTGGAAT 542
||||||||||||| | ||| | | ||| |||||||||||||| || ||||||
Sbjct 628 CACTAACAAGGTTAA-C----CAATGCA-AAG---AACAAAAAGTGGATGATATTGGAAA 678
Query 543 ATGCAGTCTTGGGATTAAAGAAAGCTCTGGTGTTATGTCTCTTAGTAGCAACAAGGCTGG 602
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 679 ATGCAGTCTTGGAATTAAAGAAAGCTCTGGTGTTATGTCTCTTAGTAGCAAGAAGGCTGG 738
Query 603 ATTATTCAGTAAAGAGCATGATTCTGAGTTTCAGATTCCTGCAATTTTTAAAGCAAAACG 662
|||| |||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 739 ATTAGTCAGTAAAGATCATGATTCTGAGTTTCAGATTCCTGCAATTTTCAAGGCAAAACG 798
Query 663 AAAAGTTTGCTTTGTTAGGAGTCCTGATAAGTCAAAAACTCATGTGAGTTTCTCTGATCA 722
||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 799 GAAAGTATGCTTTGCGAGGAGTCCTGATAAGTCAAAAACTCATGTGAGGTTCTCTGATCA 858
Query 723 CACTGGAAATCTTTCTCAGCTGGAGAAAAGTACTGTCTCTTTAGAACTCTGCTGTTTGGA 782
| ||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 859 AAGTGGGAATCTTTCTCAGCTGGAGAAAAGTACCGTCTCTTTACAACTCTGCTGTTTGGA 918
Query 783 AATGAATAGGTTGAGTCTCTCTGGAAATCTTTCTCGGAGGAAGGATCCGTCATCTGTAAA 842
||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||
Sbjct 919 AATGAATAGGTTGAGTCTCTCTGAAAATCTTTCTCAGAGGAAGAATCAGTCATCTGTAAA 978
Query 843 TGACAAGCAAGTGAAGGTTATGTCGACTGATCAGACTAGTACAGTTATGCATTTCGAAAC 902
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 979 TGACAAGCAACTGAAGGTTATGTCGACTGATCAGACTAGTACAGTTATGCATTTGGAAAC 1038
Query 903 AAGGCAACAATACAAATTTCAGCCTGCGGTTTCAAAATCTGACTTGTCTTGTTTCCTTGG 962
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1039 AAGGCAACAATACAAGTTTCAGCCTGCGGTTTCAAAATCTCACTTGTCTTGTTTCCTTGG 1098
Query 963 ACCACATCTTAGTTCACAGGAAAGAGTAAATGATGCATTGGATTTGGAGAGAAAGGAACA 1022
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1099 ACCACATCTTAGTTCACAGGAAAGAGTAACGGATGCATTGGATTTGGAGAGAAAGGAATA 1158
Query 1023 TGTGGCTCAACCTATTCAATCGTTTATCTCTACTTCGAGTGAGAGTCCGTACAGAGCTTG 1082
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1159 TGTGGCTCAAGCTATTCAATCGTTTATCTCTACTTCGAGTGAGACTCCGTACAGAGCTTG 1218
Query 1083 TCCTTCTTTTTCTCAACCTGTGTCAGCTGATATGCACCGAGGGGCATTGCTGTACCAATC 1142
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1219 TCCTTCTTTTTCTCAACCTGTGTCAGCTGATATGCACCGCGGGACATTGCTGTACCAATC 1278
Query 1143 ACCTTTTGATCCACTTCTTGTCGAATGGATGCAAAAATCAGCTTTATATAGACAAAGGCA 1202
||||||||||||||||| | |||||||||||||||||||| |||| |||||||||||||
Sbjct 1279 ACCTTTTGATCCACTTCCTACCGAATGGATGCAAAAATCAGTTTTAAATAGACAAAGGCA 1338
Query 1203 CGTGGGAGAAGCGATCCTAGGGTTCCCTCTAAATTTAGAGGGTGACCTTGTTGATGCAAA 1262
|||||||| |||||| |||||||||||||| || || |||||||||| |||||||| ||
Sbjct 1339 TGTGGGAGAGGCGATCTTAGGGTTCCCTCTAGATCTACAGGGTGACCTAGTTGATGCGAA 1398
Query 1263 TGGAGAGGCTAATAGAAGTTTTGATCGGTCAGGTTTATGTACTAGTTCCTCTAAATCTGC 1322
||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1399 TGGAGAGACTTGTAGAAGTTTTGATCGGTCAGGTTTATGTACTAGTTTCTCTAAATCTGC 1458
Query 1323 ATCTGCAGGGAATGATCTTTTACTTGGAAATTTAGTGGACTTTTCCAGTGAAAAGAAGCA 1382
|||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1459 ATCTACAGGTAATGATCTTTTACTTGGAAATTTAGTGGAATTTTCCAGTGAAAAGAAGCA 1518
Query 1383 TTCAACTGAGCCAGCACTTGCCAAAGACAGTGCACCGCGTAATGAGAAACGCCACAAGTA 1442
|| || |||| |||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1519 TTTAATTGAGGCAGCACTTGCCAAAGACAATGCACCGCTTAATGAGAAACGCCACAAGTA 1578
Query 1443 CTTTCCTGCTAGGTTAGGCCTTGATGAGACCTTTACAGAGAAAGCATATTTCACAAACAC 1502
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1579 CTTTCCTGCTAGGTTAGGCCTTGATGAGACCTTCACAGAGAAAGCATATTTAACAAACAC 1638
Query 1503 TAATGATGGAGAGTGCGGCTACACTTTACATTCATCGGTTTCTGAAGTCAATCCAAGGAG 1562
|||||||||||||||||||||||| || | |||||||||||||||||| |||||
Sbjct 1639 TAATGATGGAGAGTGCGGCTACAC---AC---C---GGTTTCTGAAGTCAATCCGAGGAG 1689
Query 1563 CCACACAATCAATATGTCAAAACAG-AGTTGTGTCAAACAGAACCTAAATAGTGGAAAGG 1621
|||| |||||||||||||||| | | | | |||||||||||||||||||||| |||||||
Sbjct 1690 CCACGCAATCAATATGTCAAAGC-GTAATGGTGTCAAACAGAACCTAAATAGCGGAAAGG 1748
Query 1622 TGATTTCAAAGCGTGATGATTTGTGTTTACAAAACACTCAAGCAACAATGCGGCTGATGG 1681
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 TGATTTTAAAGCGTGATGATTTGTGTTTACAAAACACTCAAGCAACAATGCGGCTGATGG 1808
Query 1682 GTCAGGATGTTTCTGTCAGCACAAGA-ACG--GGC--GAT-AG---G--T-------TCT 1723
|| |||||||||||||||||||||| || || ||| || | | ||
Sbjct 1809 GTAAGGATGTTTCTGTCAGCACAAGTTACTCAGGTATGATTAGAACGGGTGAGAGGATCA 1868
Query 1724 TAGCACCGGATGCTTCTATAGATTATTCCTCTCTGGGGAGCC-ATACTCACCAGAGCTGG 1782
||| ||||||||||||||||||||||||||||||||||| || ||||||| || ||||||
Sbjct 1869 TAGGACCGGATGCTTCTATAGATTATTCCTCTCTGGGGA-CCTATACTCATCAAAGCTGG 1927
Query 1783 CTATGTCAAAGGACAACACTTGAAGTTTCA-ATGAGTCCTTCAACCACAACATTGGATAA 1841
|||||||||||||||| |||||||||||| | || || ||||||||||| |||||||||
Sbjct 1928 GTATGTCAAAGGACAACTCTTGAAGTTTCAGA-GAATCATTCAACCACAATATTGGATAA 1986
Query 1842 GAATTGGAACAGAGCTTTGCTACGTGATACTTCAAAGGATCCCTTTTCTTTGTTTTGTGA 1901
||||||||||| |||| ||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1987 GAATTGGAACAAAGCTCTGCTACGTGATACTTCAAAAGATCCCTTTCCTTTGTTTTGTGA 2046
Query 1902 ACCACATGTCAGCTTGGCTTCTCAATCCAGAGCATATG-TAATTCCTGATTCA-A-T--C 1956
||||| |||||||||||||||||||||||||||||||| | ||||||||||| | | |
Sbjct 2047 ACCACTTGTCAGCTTGGCTTCTCAATCCAGAGCATATGCTG-TTCCTGATTCAGAATTTC 2105
Query 1957 CT-----------GAATCCATGTTGCTCGCTCGTGTCTCTTCCATTGTCTGATAAGGATC 2005
|| |||||||||||||||||||| |||| |||| |||||||| ||| |||
Sbjct 2106 CTTCCACAATCCTGAATCCATGTTGCTCGCTCGCGTCTTTTCCTTTGTCTGAGAAGAATC 2165
Query 2006 TCAACTTCCATGGATCTGGTTTAGGGCTACCAAACAGTTTCACATTCAGCCAGCAACAAC 2065
||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 2166 TCAACTTCCATGGGTCTGGTTTAGGGCCACCAAACAGTTTCACACTCAGCCAGCAACAAC 2225
Query 2066 TACCTTTTCCATCTAATTACAACAATGTTGATATTGGTCTCCTACCTGATGCTAGAAAAC 2125
|||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2226 TACCTTTTCCATATGATTATAACAATGTTGATATTGGTCTCCTACCTGATGCTAGAAAAC 2285
Query 2126 CATCTTTCGGATTGCCTTTCTCGTGCGTAGATTCTACTAGACGGTCACAGGCTCCTTGGC 2185
|||||||||||||||||| ||| | | ||||| |||||||||||||| ||||||||
Sbjct 2286 GATCTTTCGGATTGCCTTTATCGAGTACAAATTCTGCTAGACGGTCACAGACTCCTTGGG 2345
Query 2186 CTCAAAGTTCATTTGAGAACTCTTGTTCTGAATTGTCTTTCATCAACCCCAGCGAGCAAC 2245
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2346 CTCAAAGTTCATCTGAGAACTCTTGTTCTGAATTGTCTTTCGTCAACCCCAGCGAGCAAC 2405
Query 2246 TAACGTCCTTCTATGGGTCAAGTTTATCTTCGTCCATAATAAACGTTGGAACTACAAATA 2305
|||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 2406 TAACGTCCTTCTATGGGTCAAGGTTATCTTCGTCCATAA-A--CGTTGGAACTACAAATA 2462
Query 2306 AGCGGGTAGCACCCGTAGAGGAGTATCCAATGAAGAACCATAAAATCCCCAAGTTGCTGC 2365
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2463 AGCGGGTAGCACCCGTAGAGGAGTATCCAATGAAGAACCATAAAGTCCCCAAGTTGCTGC 2522
Query 2366 CAATGCAAGGTGGCATGAATTATGTTAAAGAGTTTCTTTGCAGGCCAGCAAATTAAGGAA 2425
|||||||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2523 CAATGCAAGGTGGCTTAAATTATGTTAAAGAATTTCTTTGCAGGCCAGCAAATTA-GGAA 2581
Query 2426 ATCAATAAATCTAGGAGTCTAAGGGTATATAACCTTGTAATTGTTTGAACCATCCCTTGT 2485
|||| ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 2582 ATCACTAA-TCTAGGAGTCTAAGGGTATATAGCCTTGTA-TTGTTTGAACCATCCCTTGT 2639
Query 2486 GTGTTTTATGAATTATTTGGTGATAATGCCTTACTTGGAATGAATTGTTGTGCATGATTG 2545
|||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||||||
Sbjct 2640 GTGTTTTATGAATTATTTGGTGTTAGTGCCTTACTCGGAATGAATTGTTGTACATGATTG 2699
Query 2546 CCTTGTTTAGGTAGTACAACACC 2568
||||||||| || ||||||||||
Sbjct 2700 CCTTGTTTAAGTCGTACAACACC 2722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127474202163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5