BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486333
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box transcr... 976 0.0
AT2G42830.2 | Symbols: SHP2, AGL5 | K-box region and MADS-box t... 682 0.0
> AT3G58780.3 | Symbols: SHP1 | K-box region and MADS-box transcription
factor family protein | chr3:21738460-21742517 FORWARD
LENGTH=1894
Length=1894
Score = 976 bits (528), Expect = 0.0
Identities = 605/640 (95%), Gaps = 14/640 (2%)
Strand=Plus/Plus
Query 554 TGTGAGGGGAACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAACCCTCCTTC 613
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TGTGAGGGGTACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAACCCTCCTTC 683
Query 614 CGTCACCGAAGCTAATACTCAGTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGAT 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 CGTCACCGAAGCTAATACTCAGTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGAT 743
Query 674 TCGAGATATTCAGAATTCAAACAGGCATATTGTTGGGGAATCACTTGGTTCCTTGAACTT 733
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 744 TCGAGATATTCAGAATTCAAATAGGCATATTGTTGGGGAATCACTTGGTTCCTTGAACTT 803
Query 734 AAAGGAGCTCAAAAACCTCGAAGGACGGCTTGAAAAAGGAATCAGCCGTGTCCGATCCAA 793
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 804 CAAGGAACTCAAAAACCTAGAAGGACGTCTTGAAAAAGGAATCAGCCGTGTCCGCTCCAA 863
Query 794 AAAGAACGAGCTGTTAGTGGCAGAGATAGAGTATATGCAGAAGAGGGAAATGGAGTTGCA 853
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 AAAGAATGAGCTGTTAGTGGCAGAGATAGAGTATATGCAGAAGAGGGAAATGGAGTTGCA 923
Query 854 ACACAATAACATGTACCTGCGAGCTAAGATAGCCGAAGGTGCCAGATTGAATCCGGAACA 913
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 924 ACACAATAACATGTACCTGCGAGCAAAGATAGCCGAAGGCGCCAGATTGAATCCGGACCA 983
Query 914 GCAGGAATCGAGTGTGATACAAGGGACGACTGTTTACGAATCCGGTGTATCTTCTCATGA 973
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 984 GCAGGAATCGAGTGTGATACAAGGGACGACAGTTTACGAATCCGGTGTATCTTCTCATGA 1043
Query 974 CCAGTCGCAGCATCATAATCGGAACTATATTCCGGTGAACCTTCTTGAACCGAATCAGCA 1033
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CCAGTCGCAGCATTATAATCGGAACTATATTCCGGTGAACCTTCTTGAACCGAATCAGCA 1103
Query 1034 ATTCTCCGGCCAAGACCAACCTCCTCTTCAGCTTGTGTAACTCAAAACATGAAAACTTGT 1093
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1104 ATTCTCCGGCCAAGACCAACCTCCTCTTCAACTTGTGTAACTCAAAACATGATAACTTGT 1163
Query 1094 TTCTTCCCCTCAAAACTATTAAGAGAGA----------TTCATTTTATATTTATAATGCG 1143
|||||| ||||| ||| ||||||||||| |||||||||||||||||| |||
Sbjct 1164 TTCTTCTCCTCATAACGATTAAGAGAGAGACGAGAGAGTTCATTTTATATTTATAACGCG 1223
Query 1144 ACT-TCTTAAATTCATAGTTTAGGTTCAAATAATGATAAT 1182
||| | | | |||||||||||||||| ||||||||||||
Sbjct 1224 ACTGTGT-A--TTCATAGTTTAGGTTCTAATAATGATAAT 1260
Score = 811 bits (439), Expect = 0.0
Identities = 524/561 (93%), Gaps = 21/561 (4%)
Strand=Plus/Plus
Query 1 GTTAGATGATCTGTCCA-ttttttc-tttttattttATGTATAAATATATTTGAGCACAA 58
||||||||||||||||| ||||||| ||||| || | |||||||||||||||||||||||
Sbjct 1 GTTAGATGATCTGTCCATTTTTTTCTTTTTTCTTCTGTGTATAAATATATTTGAGCACAA 60
Query 59 AGAAAAAACTAATAACCTTCTGTTTTCAGCAAGTAGGGTCTTATTACCTTCAAAGAAATA 118
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 AG-AAAAACTAATAACCTTCTGTTTTCAGCAAGTAGGGTCTTATAACCTTCAAAGAAATA 119
Query 119 TTCCTTCAAATATATG-AAACTCATAAACCAAAACAGAAATTACAAAAAGAAAGAGAGAT 177
||||||| | || || |||| |||||||||||| ||| ||||||||| |||||||||||
Sbjct 120 TTCCTTC--A-AT-TGAAAACCCATAAACCAAAATAGATATTACAAAAGGAAAGAGAGAT 175
Query 178 ATTTTTCAAGAACAACATAATTAGAAGAGCAGAAGCAGCAGTTAAGTGGTACTGAGATAA 237
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 176 A-TTTTCAAGAACAACATAATTAGAAAAGCAGAAGCAGCAGTTAAGTGGTACTGAGAT-- 232
Query 238 ATAATAATATATAGTTTCTCTTC---AA-AGTTTCTCATCACCCACCTTCTCCTTTTTTG 293
| ||| ||||||||||||||| || |||||||||| ||||||||||||| ||||||
Sbjct 233 A-AAT--GATATAGTTTCTCTTCAAGAACAGTTTCTCATTACCCACCTTCTCC-TTTTTG 288
Query 294 CTGATCTATCATAATCTTGAGAACTCAGGATCAATGGAGGAAGGTGGGAGTAGTCACGAC 353
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CTGATCTATCGTAATCTTGAGAACTCAGGATCAATGGAGGAAGGTGGGAGTAGTCACGAC 348
Query 354 ggagagagtagcaagaaga-tagggagagggaaaatagagataaagaggatagagaACAC 412
| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GCAGAGAGTAGCAAGAA-ACTAGGGAGAGGGAAAATAGAGATAAAGAGGATAGAGAACAC 407
Query 413 AACAAATCGTCAAGTAACTTTCTGCAAACGACGCAATGGTCTTCTCAAGAAAGCTTATGA 472
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 AACAAATCGTCAAGTTACTTTCTGCAAACGACGCAATGGTCTTCTCAAGAAAGCTTATGA 467
Query 473 ACTCTCAGTCTTGTGTGATGCGGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCT 532
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 468 ACTCTCTGTCTTGTGTGATGCCGAAGTTGCCCTCGTCATCTTCTCCACTCGTGGCCGTCT 527
Query 533 CTATGAGTACGCCAACAACAG 553
|||||||||||||||||||||
Sbjct 528 CTATGAGTACGCCAACAACAG 548
> AT2G42830.2 | Symbols: SHP2, AGL5 | K-box region and MADS-box
transcription factor family protein | chr2:17820255-17824013
FORWARD LENGTH=1141
Length=1141
Score = 682 bits (369), Expect = 0.0
Identities = 637/762 (84%), Gaps = 36/762 (5%)
Strand=Plus/Plus
Query 326 AATGGAGGAAGGTGGGAGTAGTCACG-ACggagagagtagcaagaagatagggagaggga 384
|||||||| |||| ||||| | | | | | |||||| ||||||||||||||||||||||
Sbjct 187 AATGGAGGGTGGTGCGAGTAATGAAGTA-GCAGAGAGCAGCAAGAAGATAGGGAGAGGGA 245
Query 385 aaatagagataaagaggatagagaACACAACAAATCGTCAAGTAACTTTCTGCAAACGAC 444
| |||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 246 AGATAGAGATAAAGAGGATAGAGAACACTACGAATCGTCAAGTCACTTTCTGCAAACGAC 305
Query 445 GCAATGGTCTT-CTCAAGAAAGCTTATGAACTCTCAGTCTTGTGTGATGCGGAAGTTGCC 503
|||||||| || ||||||||||||||||| ||||| ||||||||||| || || |||||
Sbjct 306 GCAATGGT-TTACTCAAGAAAGCTTATGAGCTCTCTGTCTTGTGTGACGCTGAGGTTGCT 364
Query 504 CTCGTCATCTTCTCCACTCGTGGCCGTCTCTATGAGTACGCCAACAACAGTGTGAGGGGA 563
|| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 365 CTTGTCATCTTCTCCACTCGAGGCCGTCTCTACGAGTACGCCAACAACAGTGTGAGAGGA 424
Query 564 ACAATTGAAAGGTACAAGAAAGCTTGTTCCGATGCCGTCAACCCTCCTTCCGTCACCGAA 623
||||| |||||||||||||||||||| ||||| ||||| |||||||| || ||||||||
Sbjct 425 ACAATAGAAAGGTACAAGAAAGCTTGCTCCGACGCCGTTAACCCTCCGACCATCACCGAA 484
Query 624 GCTAATACTCAGTACTATCAGCAAGAAGCCTCTAAGCTTCGGAGGCAGATTCGAGATATT 683
|||||||||||||||||||||||||| || ||||| || ||||| |||||||| || |||
Sbjct 485 GCTAATACTCAGTACTATCAGCAAGAGGCGTCTAAACTCCGGAGACAGATTCGGGACATT 544
Query 684 CAGAATTCAAACAGGCATATTGTTGGGGAATCACTTGGTTCCTTGAACTTAAAGGAGCTC 743
||||||| ||||| || ||| |||| ||||| ||||||||||||||||| ||||| |||
Sbjct 545 CAGAATTTGAACAGACACATTCTTGGTGAATCTCTTGGTTCCTTGAACTTTAAGGAACTC 604
Query 744 AAAAACCTCGAAGG-ACGGCTTGAAAAAGGAATCAGCCGTGTCCGATCCAAAAAGAACGA 802
|| ||||| ||| | | ||||||| ||||||||||| |||||||||||||| ||| ||||
Sbjct 605 AAGAACCTTGAAAGTA-GGCTTGAGAAAGGAATCAGTCGTGTCCGATCCAAGAAGCACGA 663
Query 803 GCTGTTAGTGGCAGAGATAGAGTATATGCAGAAGAGGG-AAATG-----GAGTTGCAACA 856
| ||||||| |||||||| || || ||||| || |||| ||| | ||| ||||| |
Sbjct 664 GATGTTAGTTGCAGAGATTGAATACATGCAAAAAAGGGTAAAAGAAATCGAGCTGCAAAA 723
Query 857 CAATAACATGTACCTGCGAGCTAAGAT-AGCCGAAGGTGCCAGAT-TGAATCCGGAACAG 914
| |||||||||| || || | ||||| | | ||| | | || | | | | | ||||
Sbjct 724 CGATAACATGTATCTCCGCTCCAAGATTA-CTGAAAGAAC-AGGTCT-A--CAGCAACA- 777
Query 915 CAGGAATCGAGTGTGATACA--A-GGGACGACTGTTTACGAATCCGGTGT-ATCTTCT-C 969
|| |||||||||||||||| | ||||| | |||||||| || ||||| | ||||| |
Sbjct 778 -AG-AATCGAGTGTGATACATCAAGGGAC-A--GTTTACGAGTCGGGTGTTA-CTTCTTC 831
Query 970 ATGACCAGTCGCAGCA-TCATAATCGGAACTATATTCCGGTGAACCTTCTTGAACCGAAT 1028
| |||||||| ||| | |||| ||||| |||||| |||| ||||||||||||||||||
Sbjct 832 -TCACCAGTCGGGGCAGT-ATAACCGGAATTATATTGCGGTTAACCTTCTTGAACCGAAT 889
Query 1029 CAGCAATTC-TCCGGCCAAGACCAACCTCCTCTTCAGCTTGT 1069
||| ||||| ||| |||||||||||| ||||| || |||||
Sbjct 890 CAG-AATTCCTCCAACCAAGACCAACCACCTCTGCAACTTGT 930
Score = 60.2 bits (32), Expect = 4e-08
Identities = 39/42 (93%), Gaps = 2/42 (5%)
Strand=Plus/Plus
Query 209 GAAGCAGCAGTTAAGTGGTACTGAGATAAATAATAATA-TAT 249
||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 39 GAAGCAGCAGTTAAGTGGTACTGAGATAA-TAAGAATAGTAT 79
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5