BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486339
Length=1719
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58810.1 | Symbols: MTPA2, ATMTPA2, MTP3, ATMTP3 | metal tol... 1964 0.0
> AT3G58810.1 | Symbols: MTPA2, ATMTPA2, MTP3, ATMTP3 | metal tolerance
protein A2 | chr3:21749966-21752006 FORWARD LENGTH=2041
Length=2041
Score = 1964 bits (1063), Expect = 0.0
Identities = 1190/1251 (95%), Gaps = 10/1251 (1%)
Strand=Plus/Plus
Query 473 ATGGAAGACCATATTCATGAGCATGAACACATGGTTCAGATTTGTGGAGAAGTTTCATCA 532
||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 748 ATGAAAGACCATATTCATGAGCATGACCACATGGTTCAGATTTGTGGGGAAGTTTCATCA 807
Query 533 GGAGAAACAAGCTTGGTGGGCATCAAGAAGACATGTGGAGAAGCGCCTTGCGGATTCTCA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GGAGAAACAAGCTTGGTGGGCATCAAGAAGACATGTGGAGAAGCGCCTTGCGGATTCTCA 867
Query 593 GATGCCAAGACCAGTTCAATAGAAGCTCAAGAACGTGCAGCATCAATGAGAAAGCTATTA 652
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 868 GATGCCAAGACCAGTTCAATAGAAGCTCAAGAGCGTGCAGCATCAATGAGAAAGCTATTA 927
Query 653 ATAGCTGTTGTTCTCTGTGCCATTTTCATAGTTGTAGAAGTCGTTGGAGGAATCAAGGCC 712
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 ATAGCTGTTCTTCTCTGTGCCATTTTCATAGTTGTAGAAGTCGTTGGAGGAATCAAGGCC 987
Query 713 AATAGTCTCGCCATTCTCACTGATGCAGCTCATCTGTTATCTGATGTTGCAGCCTTTGCC 772
|| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 988 AACAGTCTTGCGATTCTCACAGATGCAGCTCATCTGTTATCTGATGTTGCAGCCTTTGCA 1047
Query 773 ATATCTTTGTTCTCGCTCTGGGCTTCGGGATGGAAGGCAAATCCGCAGCAATCATATGGG 832
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 1048 ATATCTTTGTTCTCGCTCTGGGCTTCGGGATGGAAGGCAAACCCTCAGCAATCTTATGGG 1107
Query 833 TTTTTCAGAATAGAGATTCTTGGTGCTCTTGTCTCCATTCAAATGATTTGGCTTCTTGCT 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 TTTTTCAGAATAGAGATTCTTGGTGCTCTTGTCTCCATTCAAATGATTTGGCTTCTTGCT 1167
Query 893 GGTATCTTGGTTTATGAAGCCATTGTTAGACTTAACAACGGTAGTGGCGAAGTTGAGGGA 952
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1168 GGTATCTTGGTTTATGAAGCCATTGTTAGACTTAACAACGGTAGTGGTGAAGTGGAGGGA 1227
Query 953 TCTCTTATGTTTGCTGTCTCTGCAGTTGGCTTACTTGTCAACATTGCAATGGCTATTCTG 1012
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1228 TCTCTTATGTTTGCTGTCTCTGCAGTTGGCTTACTTGTGAACATTGCAATGGCTATTCTG 1287
Query 1013 TTAggtcatgaccatggtcatggtggtcatagtcatagtcatgaccatggtcacggtcat 1072
|||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 1288 TTAGGTCATGACCATGGTCATGGT---CATGGTCATAGTCATGACAATGGTCACGGTCAT 1344
Query 1073 agtcatgatcatgaccatggAATTGCCGCAACCGAGCATCATCATGGC-CAGAGGCATGA 1131
||||||||||||| ||||||||| |||||||||||||||||||||| | | | | |||||
Sbjct 1345 AGTCATGATCATGGCCATGGAATAGCCGCAACCGAGCATCATCATGACTCTG-GTCATGA 1403
Query 1132 TGAATCACATCTATCCGAGGTCTTAATCGAGCAAAAGAAGCAGCGGAATGTAAATATTCA 1191
||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1404 TGAATCACAACTATCTGATGTCTTAATCGAGCAAAAGAAGCAGCGTAATGTAAATATTCA 1463
Query 1192 AGGGGCTTATCTTCACGTGCTGGGAGATTCGATACAGAGCGTAGGAGTGATGATAGGAGG 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 AGGGGCTTATCTTCACGTGCTGGGAGATTCGATACAGAGCGTAGGAGTGATGATAGGAGG 1523
Query 1252 AGCAATCATATGGTATAAACCGGAGTGGAAGATCCTTGATTTGATATGCACATTGGTTTT 1311
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 AGCAATCATATGGTATAAGCCGGAGTGGAAGATCCTTGATTTGATATGCACATTGGTTTT 1583
Query 1312 CTCTGTGATTGTGTTGGGGACGACAATTGAGATGCTCAGGAACATTCTACAGGTTTTAAT 1371
||||||||||||||| ||||| ||||||| |||||| |||||||||||| ||||||||||
Sbjct 1584 CTCTGTGATTGTGTTAGGGACAACAATTGGGATGCTTAGGAACATTCTAGAGGTTTTAAT 1643
Query 1372 GGAGTCAACACCACGAGAGATCGACGCGACAATGCTTGAAAAGGGAGTGTGTGAGATAGA 1431
||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||
Sbjct 1644 GGAGTCAACACCACGAGAGATTGACCCGACAATGCTTGAAAAGGGAGTGTGTGAAATTGA 1703
Query 1432 AGAAGTGGTGGCTGTTCATGAGCTTCACATTTGGGCAATTACCGTTGGCAAACTTTTGTT 1491
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 1704 AGAAGTGGTGGCTGTTCATGAGCTTCACATTTGGGCGATTACTGTCGGCAAACTTTTGTT 1763
Query 1492 GGCATGTCATGTTAAAATCAGACCTGAGGCAGAGGCAGATATGGTTTTGGACAAGATTAT 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 GGCATGTCATGTTAAAATCAGACCTGAGGCAGAGGCAGATATGGTTTTGGACAAGATTAT 1823
Query 1552 TGATTACATCAAGAGGGAACACAACATAAGTCATGTGACTATTCAGATCGAACGCCAATG 1611
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1824 CGATTACATTAAGAGGGAACACAACATTAGTCACGTGACTATTCAGATCGAACGTCAATG 1883
Query 1612 AAGCGACGTGACAAAGTGTTTTTTGCATTATCAT--CTACTTTGTTTGACCATTTTGTTA 1669
|||| ||||||||| | |||||| |||||||||| ||||||||| |||||||||||| |
Sbjct 1884 AAGCAACGTGACAAGGCGTTTTT-GCATTATCATATCTACTTTGTCTGACCATTTTGTAA 1942
Query 1670 TGTTTGTCTTGTGTACAAAAGTGTTTTTTC--CCCAACGTATGTATCATAT 1718
||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1943 TGTTTGTCTTGTGTACAAAAGTGTTTTTTTTTCCCAACGTATGTATCATAT 1993
Score = 287 bits (155), Expect = 3e-76
Identities = 191/207 (92%), Gaps = 7/207 (3%)
Strand=Plus/Plus
Query 269 ATAT-ATAATATATAGTTTTGAGAAAGAGTGACTAGATGGGAGGCATGGATCATGACTTT 327
|||| ||| ||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 437 ATATGATACTATATAGTTTTGAGAAAGA--GACTAGATGGGAGGCATGTATCATGACTTT 494
Query 328 CTCTATTTCTTTTTGTTCCCTCTCAATTTTCCAATATTGCGTATGACTTTTGGTTTTG-G 386
|||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| |
Sbjct 495 CTCTATTTCTTTTTGTTCTCTCTCAGTTTTCCAATATTGCGTATAACTTTTGGTTTTGAG 554
Query 387 GATTTTATATATAAA-AGGTTGCCTAGAATGGTATGATTACACCCAAATTACATCTCGAT 445
| ||||||||||||| || ||||| ||||||||||| | |||||||||||||||||||||
Sbjct 555 G-TTTTATATATAAAGAGTTTGCC-AGAATGGTATGGTGACACCCAAATTACATCTCGAT 612
Query 446 CTCTCTCTTACAACAAAGGTATCTTAC 472
||||||||||||| |||||||||||||
Sbjct 613 CTCTCTCTTACAAAAAAGGTATCTTAC 639
Score = 80.5 bits (43), Expect = 5e-14
Identities = 54/59 (92%), Gaps = 2/59 (3%)
Strand=Plus/Plus
Query 1 ATCTTTGTTTCTACTTTCTTCATTCATTCTGTAGGTAGC-AAACGGATTTCGTACTTAA 58
||||||||||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||
Sbjct 77 ATCTTTGTTTCTACTTTCTTCATTCATTCTGCAGGTAGCGAAA-GGATTTGGTAGTTAA 134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84989522685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5