BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486343
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
AT3G58840.1 | Symbols: | Tropomyosin-related | chr3:21757312-2... 1495 0.0
> AT3G58840.1 | Symbols: | Tropomyosin-related | chr3:21757312-21758772
REVERSE LENGTH=1246
Length=1246
Score = 1495 bits (809), Expect = 0.0
Identities = 940/1003 (94%), Gaps = 9/1003 (1%)
Strand=Plus/Plus
Query 1 GATTAGCCGATCCCTCCACCGGAAAATC---AGAAGCAGCGTAAATGGCGGATGTTGAAG 57
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 59 GATTAGCCGATCCCTCCACCGGAAAATCGGAAGTAGAAGCGTAAATGGCGGATGTTGAAG 118
Query 58 ATCGTGCCGCAAAGGGGATCTCTGACTACGATCAATCCAGTGGAAAGACGACGGAACTGG 117
||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 119 ATCGTGCGGCGAAGGGGATCTCTGACTACGATCAAGGTGGTGTAAAGACGACGGAACTGG 178
Query 118 AAAGGAAGATTGATGAAATGGAGAACAAGAATCAGGAGCTTACTAAAGAGAATCGAGAGT 177
||||||||||||| || ||||||||||||||||||||||| || | ||||||||| || |
Sbjct 179 AAAGGAAGATTGAGGATATGGAGAACAAGAATCAGGAGCTCACGAGAGAGAATCGTGAAT 238
Query 178 TGAAGGAGAGGTTAGAGAGGCTTACGGGAGAAATTGAAGAGATGAAAGGTGTAGAAGCGG 237
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 TGAAGGAGAGGTTAGAGAGGCTTACGGGAGAAATTGAAGAGATGAAAGACGTAGAAGCGG 298
Query 238 AGATGAATCAGAGATTCGGAGAAATGGAGGAAGAGATCGAGGATTACGAGGAAGAGAAGA 297
|||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 299 AGATGAATCAGAGATTCGGAGAGATGGAGAAAGAGATCGAGGAGTACGAGGAAGAGAAGA 358
Query 298 AGGCTTTGGAATCTATTTCTACGAGAGCTGTGGAGCTTGAAACTGAGGTGTCGAATCTTC 357
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 AGGCTTTGGAAGCTATTTCTACTAGAGCTGTGGAGCTTGAAACTGAGGTGTCGAATCTTC 418
Query 358 AGGACGATCTGATCACTTCTTTGAACGGCGTGGATAAGACGGCGGAAGAAGTCGCGGAGC 417
| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 419 ATGACGATCTGATCACTTCCTTGAACGGAGTGGATAAGACGGCGGAAGAAGTGGCGGAGC 478
Query 418 TTAAGAAAGCCTTGGCGGAGAAAGGGGAGAAGCTGGAGGGGTATGAGAAGGAAGCTGAGG 477
| |||||||| |||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 479 TGAAGAAAGCGTTGGCGGAGATAGTGGAGAAGCTGGAGGGGTGTGAGAAGGAAGCTGAGG 538
Query 478 GTTTAAGGAAAGATAGAGCTGAGGTTGAGAAGAGGGTTAGGGATTTGGAAAGGAAGATTG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTTTAAGGAAAGATAGAGCTGAGGTTGAGAAGAGGGTTAGGGATTTGGAAAGGAAGATTG 598
Query 538 GGGTTTTGGAAGTGAGGGAAATGGAGGAGAAGAGTAAGAAACTTAGATCAGAAGAGGAGA 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 GGGTTTTGGAAGTGAGGGAAATGGAGGAGAAGAGTAAGAAACTTAGATCAGAAGAGGAAA 658
Query 598 TGAGGGA-ACTAGCGGATGAGAAAAAGAGAGAGATTGACGAATTGCAGAAGACAGTCGGT 656
||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 659 TGAGGGAGA-TAGATGATGAGAAAAAGAGAGAGATTGAGGAATTGCAGAAGACAGTCATT 717
Query 657 GCTTTGAATCTGGAATTGGTGAAGAATGTAGAGGAATTGGCGAAATGGAAGTCTGAGAAG 716
| |||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 718 GTTTTGAATCTGGAATTGGTGAAGAATGTAGAAGAATTGAAGAAATGGAAGTCTAAGAAG 777
Query 717 AAGCTGACGGAGGAAGCTTTGAGTGAAACTCAAAAGA-GAGAGAAGGAGATGGAGTTAGA 775
||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||| ||
Sbjct 778 AAGCTCACGGAGGAAGCTTTGAGTGAAACTCAAAA-ACGAGAGAAGGAGCTGGAGTT-GA 835
Query 776 -GAAGGACGAGTTGCTGAAGAAGGTTGAGGAAGGTAACAAGACGGTTTTTGGGTTGAATG 834
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 836 AGAAGGACGAGTTACTGAAGAAGGTTGAGGAAGGTAACAAGACGGTTTTTGCTTTGAATG 895
Query 835 AGAGAACTATGAAGCCTAGTAATGGAGTCAGAGACACAAATGGTGGTGACCAAAAGGGTT 894
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AGAGAACCATGAAGCCTAGTAATGGAGTCAGAGACACAAATGGTGGTGACCAAAAGGGTT 955
Query 895 CCTTGGAAGCAGAGTTTCAGTGGCCCTTGGTTGCTGCTGGATCAGTTGGAGCTGCTGGTT 954
|||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 956 CCTTGGAAGCTGAGTATCAGTGGCCAGTGGTTGCTGCTGGATCAGTTGGAGCTGCTGGTT 1015
Query 955 TGGTTGCAGCGACCTTGTTCGTCTGCTATTCTAAGCTAAGGTG 997
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1016 TGGTTGCAGCGACCTTTTTCGTCTGCTATTCTAAGCTAAGGTG 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48827590884
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5